Rorug02G0352100

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0000447
Physical Location & Seq
Reverse (-)
44283673 .. 44284950
1278 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0352100.1

Sequence Viewer

Length: 1278 bp
ATGGAGTTACCGGGTGATGAGGTCCGTCATTTGTCTTTAATGTTTGCACCTAAGGGTCCATTTCCTGTTTCTTCTCTCAACTGTAAGAGTCTGCGCACTCTCACAGCTTTTGAATCGAAACTTACTAGCATTGGCGTTGAGTTGATTTCGCAATCAAAAAGCCTTAGGACTTTGAATTTGAGTGAAAACTCGATTGTAGAAGTTCCAAAGGAGATTGGTGGATTGATACATCTGAGATATCTTGACTTGTCTCATAACCGTGAACTGGAGGAATTGCCTGACAGTTTATGTGATTTATACAATCTGCAAACCTTGCGGCTTGTCGGCTGCTTCAAACTTGTCAAATTTCCCGATGAAGAGGCAATGAGAAAGCTAACCAAGTTAAAGCATCTTTATGTCAAGGGGTCCTGTATTCTAAAATCAAAAGGGATAGGGAGGTTAACCGGTCTGCAAAAGCTAGATGTGTTTCATCTAAATGATTATAGGGGTGAGGACAAAGAAGGGACGTTGAAGTTGGAAGATTTGAAAAACTTGAACCAACTTGAAGGGAGTCTTTGCATTGCACACTTGGAGTCTGTGGAAGATGCGAGTGAGGGTGTAAAGGCATGTTTGAGTGACAAACATCTCCTTCATCATCTGGAACTAGATTTCTTATGTAGCGAAGGATGTCGTAAGCGGGAGAGAGAAGAAGGGAGGGGCCAAAATGATAGAGAAATACTGAATGGGCTGCAACCACATGGAGGTTTGGAATCATTGACCATCCTGAACTGCCAGCTGGCTACTTCTCCGTGTCCTGATTGGATCTTGTCTTTACATAATCTGACAAGTCTTGTGCTGTGGCAGTTCCGTAATTGTGAGCTGCTTTCGGGTCCATTTGGGAGATTGCCGTCGCTTGAATCACTTGAAATTATGTGGATGGAGAAAGTGAAAAAGGTGGGAGTGGAGTTTTTGGGAATTGAAGAAAGAGAATTACAATCATCCTCCTCGTCTTCTCTTATTTTATTCCCCAAATTGGAAAGCCTCGAGTTCATTGTGATGGATGAGTGGGAAGAGTGGGAAGGAGTCCCTCCCCAGAATAATATTACCATAATGCCCTCCCTATCTCGCTTGGTATTTCACAGCTGCTACAAACTTGGTACGCTGCCCGACTTCCTGCGCAAGACACCACTACTAAAGACAGTGATCGTCCGCAATTCTCGAATTCTGGGTGATAAAGTCGGGGACAAAACAAGTGAGGAGTGGGCCAAGATTTCTCACGTCCCAGACATTCAATTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

425

Amino Acids

48.08

Weight (kDa)

5.79

Isoelectric Point (pI)

44.11

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_14 PF23598 31 - 346 8.8e-25 Leucine-rich repeat region
LRR_8 PF13855 31 - 87 7.2e-09 Leucine rich repeat
LRR_4 PF12799 53 - 93 1.5e-06 Leucine Rich repeats (2 copies)
LRR_8 PF13855 54 - 110 1.2e-08 Leucine rich repeat
LRR_R13L1-DRL21 PF25019 172 - 306 1.9e-26 R13L1/DRL21 LRRs
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 95, 1157
AciI CCGC 3 cut(s) 316, 676, 1189
AclWI GGATC 1 cut(s) 809
AcsI RAATTY 3 cut(s) 175, 344, 1200
AfaI GTAC 1 cut(s) 1138
AfiI CCNNNNNNNGG 3 cut(s) 265, 740, 1012
AgeI ACCGGT 1 cut(s) 443
AjiI CACGTC 1 cut(s) 1258
AluBI AGCT 6 cut(s) 107, 373, 457, 775, 859, 1122
AluI AGCT 6 cut(s) 107, 373, 457, 775, 859, 1122
Alw26I GTCTC 1 cut(s) 255
AlwI GGATC 1 cut(s) 809
Ama87I CYCGRG 1 cut(s) 1022
AoxI GGCC 2 cut(s) 697, 1242
ApeKI GCWGC 5 cut(s) 327, 727, 859, 1122, 1141
ApoI RAATTY 3 cut(s) 175, 344, 1200
ArsI GACNNNNNNTTYG 2 cut(s) 160, 192
AsiGI ACCGGT 1 cut(s) 443
AspLEI GCGC 2 cut(s) 96, 1158
AspS9I GGNCC 6 cut(s) 22, 56, 405, 697, 869, 1242
AsuC2I CCSGG 1 cut(s) 12
AsuHPI GGTGA 3 cut(s) 26, 500, 1220
AvaI CYCGRG 1 cut(s) 1022
AvaII GGWCC 4 cut(s) 22, 56, 405, 869
AxyI CCTNAGG 2 cut(s) 51, 164
BbsI GAAGAC 1 cut(s) 981
BbvI GCAGC 5 cut(s) 314, 714, 846, 1109, 1128
BccI CCATC 3 cut(s) 767, 910, 1030
BceAI ACGGC 1 cut(s) 871
BcnI CCSGG 1 cut(s) 12
BcoDI GTCTC 1 cut(s) 255
BfaI CTAG 3 cut(s) 126, 458, 644
BisI GCNGC 6 cut(s) 317, 328, 728, 860, 1123, 1142
BlsI GCNGC 6 cut(s) 318, 329, 729, 861, 1124, 1143
Bme1390I CCNGG 1 cut(s) 12
Bme18I GGWCC 4 cut(s) 22, 56, 405, 869
BmeT110I CYCGRG 1 cut(s) 1022
BmgBI CACGTC 1 cut(s) 1258
BmgT120I GGNCC 6 cut(s) 22, 56, 405, 697, 869, 1242
BmiI GGNNCC 4 cut(s) 57, 406, 698, 870
BmrFI CCNGG 1 cut(s) 12
BmsI GCATC 2 cut(s) 397, 574
BpiI GAAGAC 1 cut(s) 981
BpmI CTGGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 12
BsaWI WCCGGW 1 cut(s) 443
Bsc4I CCNNNNNNNGG 3 cut(s) 265, 740, 1012
Bse118I RCCGGY 1 cut(s) 443
Bse1I ACTGG 1 cut(s) 270
Bse21I CCTNAGG 2 cut(s) 51, 164
Bse3DI GCAATG 2 cut(s) 369, 558
BseGI GGATG 5 cut(s) 671, 759, 921, 977, 1045
BseLI CCNNNNNNNGG 3 cut(s) 265, 740, 1012
BseMI GCAATG 2 cut(s) 369, 558
BseMII CTCAG 1 cut(s) 224
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 2 cut(s) 973, 1250
BseXI GCAGC 5 cut(s) 314, 714, 846, 1109, 1128
BshFI GGCC 2 cut(s) 699, 1244
BshTI ACCGGT 1 cut(s) 443
BsiHKCI CYCGRG 1 cut(s) 1022
BsiSI CCGG 2 cut(s) 11, 444
BslFI GGGAC 4 cut(s) 517, 1049, 1235, 1244
BslI CCNNNNNNNGG 3 cut(s) 265, 740, 1012
BsmAI GTCTC 1 cut(s) 255
BsmFI GGGAC 4 cut(s) 517, 1049, 1235, 1244
BsnI GGCC 2 cut(s) 699, 1244
BsoBI CYCGRG 1 cut(s) 1022
Bsp143I GATC 2 cut(s) 801, 1182
BspACI CCGC 3 cut(s) 316, 676, 1189
BspANI GGCC 2 cut(s) 699, 1244
BspCNI CTCAG 1 cut(s) 225
BspLI GGNNCC 4 cut(s) 57, 406, 698, 870
BspPI GGATC 1 cut(s) 809
BsrDI GCAATG 2 cut(s) 369, 558
BsrFI RCCGGY 1 cut(s) 443
BsrI ACTGG 1 cut(s) 270
BssAI RCCGGY 1 cut(s) 443
BssMI GATC 2 cut(s) 801, 1182
Bst4CI ACNGT 4 cut(s) 83, 260, 284, 1180
Bst6I CTCTTC 2 cut(s) 351, 1044
BstAPI GCANNNNNTGC 1 cut(s) 313
BstC8I GCNNGC 2 cut(s) 773, 777
BstDEI CTNAG 3 cut(s) 51, 164, 233
BstF5I GGATG 5 cut(s) 671, 759, 921, 977, 1045
BstHHI GCGC 2 cut(s) 96, 1158
BstKTI GATC 2 cut(s) 804, 1185
BstMAI GTCTC 1 cut(s) 255
BstMBI GATC 2 cut(s) 801, 1182
BstMWI GCNNNNNNNGC 1 cut(s) 313
BstNSI RCATGY 1 cut(s) 609
BstSCI CCNGG 1 cut(s) 10
BstV1I GCAGC 5 cut(s) 314, 714, 846, 1109, 1128
BstV2I GAAGAC 1 cut(s) 981
BstX2I RGATCY 1 cut(s) 801
BstYI RGATCY 1 cut(s) 801
Bsu36I CCTNAGG 2 cut(s) 51, 164
BsuRI GGCC 2 cut(s) 699, 1244
BtrI CACGTC 1 cut(s) 1258
BtsCI GGATG 5 cut(s) 671, 759, 921, 977, 1045
BtsIMutI CAGTG 1 cut(s) 1185
Cac8I GCNNGC 2 cut(s) 773, 777
CfoI GCGC 2 cut(s) 96, 1158
Cfr10I RCCGGY 1 cut(s) 443
Cfr13I GGNCC 6 cut(s) 22, 56, 405, 697, 869, 1242
Csp6I GTAC 1 cut(s) 1137
CspAI ACCGGT 1 cut(s) 443
CviAII CATG 2 cut(s) 606, 737
CviQI GTAC 1 cut(s) 1137
DdeI CTNAG 3 cut(s) 51, 164, 233
DpnI GATC 2 cut(s) 803, 1184
DpnII GATC 2 cut(s) 801, 1182
Eam1104I CTCTTC 2 cut(s) 351, 1044
EarI CTCTTC 2 cut(s) 351, 1044
Eco32I GATATC 1 cut(s) 239
Eco47I GGWCC 4 cut(s) 22, 56, 405, 869
Eco81I CCTNAGG 2 cut(s) 51, 164
Eco88I CYCGRG 1 cut(s) 1022
EcoO109I RGGNCCY 1 cut(s) 405
EcoRI GAATTC 1 cut(s) 1200
EcoRV GATATC 1 cut(s) 239
FaeI CATG 2 cut(s) 609, 740
FalI AAGNNNNNCTT 2 cut(s) 537, 569
FaqI GGGAC 4 cut(s) 517, 1049, 1235, 1244
FatI CATG 2 cut(s) 605, 736
FauI CCCGC 1 cut(s) 669
Fnu4HI GCNGC 6 cut(s) 317, 328, 728, 860, 1123, 1142
FokI GGATG 5 cut(s) 678, 746, 928, 964, 1052
Fsp4HI GCNGC 6 cut(s) 317, 328, 728, 860, 1123, 1142
FspBI CTAG 3 cut(s) 126, 458, 644
FspI TGCGCA 2 cut(s) 95, 1157
GlaI GCGC 2 cut(s) 95, 1157
GluI GCNGC 6 cut(s) 317, 328, 728, 860, 1123, 1142
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 699, 1244
HapII CCGG 2 cut(s) 11, 444
HhaI GCGC 2 cut(s) 96, 1158
Hin1II CATG 2 cut(s) 609, 740
Hin6I GCGC 2 cut(s) 94, 1156
HinP1I GCGC 2 cut(s) 94, 1156
HincII GTYRAC 1 cut(s) 441
HindII GTYRAC 1 cut(s) 441
HinfI GANTC 7 cut(s) 88, 113, 550, 572, 749, 896, 1062
HpaI GTTAAC 1 cut(s) 441
HpaII CCGG 2 cut(s) 11, 444
HphI GGTGA 3 cut(s) 26, 500, 1220
Hpy166II GTNNAC 2 cut(s) 263, 441
Hpy188I TCNGA 2 cut(s) 234, 822
Hpy188III TCNNGA 6 cut(s) 242, 350, 638, 763, 794, 1197
Hpy8I GTNNAC 2 cut(s) 263, 441
Hpy99I CGWCG 1 cut(s) 892
HpyAV CCTTC 6 cut(s) 494, 539, 638, 656, 683, 1052
HpyCH4III ACNGT 4 cut(s) 83, 260, 284, 1180
HpyCH4IV ACGT 2 cut(s) 506, 1257
HpyCH4V TGCA 6 cut(s) 47, 307, 451, 558, 563, 730
HpyF10VI GCNNNNNNNGC 1 cut(s) 313
HpyF3I CTNAG 3 cut(s) 51, 164, 233
HpySE526I ACGT 2 cut(s) 506, 1257
Hsp92II CATG 2 cut(s) 609, 740
HspAI GCGC 2 cut(s) 94, 1156
KspAI GTTAAC 1 cut(s) 441
Kzo9I GATC 2 cut(s) 801, 1182
Lsp1109I GCAGC 5 cut(s) 314, 714, 846, 1109, 1128
LweI GCATC 2 cut(s) 397, 574
MaeI CTAG 3 cut(s) 126, 458, 644
MaeII ACGT 2 cut(s) 506, 1257
MaeIII GTNAC 2 cut(s) 6, 614
MalI GATC 2 cut(s) 803, 1184
MboI GATC 2 cut(s) 801, 1182
MboII GAAGA 8 cut(s) 63, 368, 530, 593, 698, 971, 981, 1061
MfeI CAATTG 1 cut(s) 1271
MflI RGATCY 1 cut(s) 801
MlyI GAGTC 4 cut(s) 97, 559, 581, 1071
MmeI TCCRAC 1 cut(s) 495
MseI TTAA 3 cut(s) 38, 383, 440
MslI CAYNNNNRTG 4 cut(s) 258, 393, 474, 1034
MspA1I CMGCKG 2 cut(s) 775, 1122
MspI CCGG 2 cut(s) 11, 444
MspR9I CCNGG 1 cut(s) 12
MunI CAATTG 1 cut(s) 1271
MwoI GCNNNNNNNGC 1 cut(s) 313
NciI CCSGG 1 cut(s) 12
NdeII GATC 2 cut(s) 801, 1182
NlaIII CATG 2 cut(s) 609, 740
NlaIV GGNNCC 4 cut(s) 57, 406, 698, 870
NmuCI GTSAC 1 cut(s) 614
NsbI TGCGCA 2 cut(s) 95, 1157
NspI RCATGY 1 cut(s) 609
PaeR7I CTCGAG 1 cut(s) 1022
PfeI GAWTC 3 cut(s) 113, 749, 896
PinAI ACCGGT 1 cut(s) 443
PkrI GCNGC 6 cut(s) 318, 329, 729, 861, 1124, 1143
PleI GAGTC 4 cut(s) 96, 558, 580, 1070
PpsI GAGTC 4 cut(s) 96, 558, 580, 1070
PpuMI RGGWCCY 1 cut(s) 405
Psp5II RGGWCCY 1 cut(s) 405
PspN4I GGNNCC 4 cut(s) 57, 406, 698, 870
PspPI GGNCC 6 cut(s) 22, 56, 405, 697, 869, 1242
PspPPI RGGWCCY 1 cut(s) 405
PspXI VCTCGAGB 1 cut(s) 1022
PsuI RGATCY 1 cut(s) 801
PvuII CAGCTG 2 cut(s) 775, 1122
RsaI GTAC 1 cut(s) 1138
RsaNI GTAC 1 cut(s) 1137
RseI CAYNNNNRTG 4 cut(s) 258, 393, 474, 1034
SaqAI TTAA 3 cut(s) 38, 383, 440
SatI GCNGC 6 cut(s) 317, 328, 728, 860, 1123, 1142
Sau3AI GATC 2 cut(s) 801, 1182
Sau96I GGNCC 6 cut(s) 22, 56, 405, 697, 869, 1242
SchI GAGTC 4 cut(s) 97, 559, 581, 1071
ScrFI CCNGG 1 cut(s) 12
SfaNI GCATC 2 cut(s) 397, 574
Sfr274I CTCGAG 1 cut(s) 1022
SinI GGWCC 4 cut(s) 22, 56, 405, 869
SlaI CTCGAG 1 cut(s) 1022
SmiMI CAYNNNNRTG 4 cut(s) 258, 393, 474, 1034
SmlI CTYRAG 1 cut(s) 1022
SmoI CTYRAG 1 cut(s) 1022
SsiI CCGC 3 cut(s) 316, 676, 1189
SspI AATATT 1 cut(s) 1081
SspMI CTAG 3 cut(s) 126, 458, 644
StyD4I CCNGG 1 cut(s) 10
TaaI ACNGT 4 cut(s) 83, 260, 284, 1180
TaiI ACGT 2 cut(s) 509, 1260
TaqI TCGA 4 cut(s) 116, 191, 1023, 1198
TauI GCSGC 1 cut(s) 319
TfiI GAWTC 3 cut(s) 113, 749, 896
Tru1I TTAA 3 cut(s) 38, 383, 440
Tru9I TTAA 3 cut(s) 38, 383, 440
TscAI CASTG 1 cut(s) 1185
TseFI GTSAC 1 cut(s) 614
TseI GCWGC 5 cut(s) 327, 727, 859, 1122, 1141
Tsp45I GTSAC 1 cut(s) 614
TspDTI ATGAA 4 cut(s) 369, 458, 620, 1018
TspGWI ACGGA 3 cut(s) 14, 777, 836
TspRI CASTG 1 cut(s) 1185
VpaK11BI GGWCC 4 cut(s) 22, 56, 405, 869
XapI RAATTY 3 cut(s) 175, 344, 1200
XceI RCATGY 1 cut(s) 609
XhoI CTCGAG 1 cut(s) 1022
XspI CTAG 3 cut(s) 126, 458, 644
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.