Rh2DG424800

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000447
Physical Location & Seq
Reverse (-)
61543824 .. 61544969
1146 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG424800.1

Sequence Viewer

Length: 570 bp
ATGGCTGCAGGTAACAGATGGTGGGGTTTGATTGGTTTGCTGGTGTTGCTGTCAATATCTGCAGTATCAGCACATGAAGAACTGGAGGAGCCACAAGAACCTACACATCCCAGGGATCATCAATTGGGTACTTATAAGCATGTCTGGCCTAAAATAAGATTTGATTGGAAAATTGTGGTGGGCACGATAATCGCTTTCCTCGGGGCAGCATTTGGGAGTGTTGGAGGTGTTGGTGGGGGTGGCTTTTTCATTCCAATGCTCACCCTCATCATTGGTTTTGATCAGAATTCATCAATTGCAGTATCCAAATGTATGATCACGGGTACATCAACTGCTCCTGTGTTATACAACTTACGGCAAAGGCATCCCACACTTGAGCTTCCCATTATTGACTATGATTTGGCGCTTCTCTTCCAACCATTACTGGTGCTGGGGATCAGCATTGGGGTTTCTTTGAATGTGGTTCTTTCTGATTGGATGATCACCATCCTACTATTTGTGGTCCTCTTAGGTAATAGTAATTTTTTATCTAATATTTCAATCTTCTCTCTTCCCAAATATCGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

189

Amino Acids

20.7

Weight (kDa)

6.5

Isoelectric Point (pI)

32.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 28 - 170 2.7e-11 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 135
AclWI GGATC 2 cut(s) 123, 443
AcoI YGGCCR 1 cut(s) 563
AcsI RAATTY 1 cut(s) 286
AfaI GTAC 2 cut(s) 130, 325
AfiI CCNNNNNNNGG 1 cut(s) 561
AgsI TTSAA 2 cut(s) 457, 540
AjnI CCWGG 1 cut(s) 110
AluBI AGCT 1 cut(s) 379
AluI AGCT 1 cut(s) 379
AlwI GGATC 2 cut(s) 123, 443
Ama87I CYCGRG 1 cut(s) 200
AoxI GGCC 2 cut(s) 146, 563
ApeKI GCWGC 2 cut(s) 5, 206
ApoI RAATTY 1 cut(s) 286
AspLEI GCGC 1 cut(s) 406
AspS9I GGNCC 1 cut(s) 502
AsuHPI GGTGA 2 cut(s) 253, 475
AvaI CYCGRG 1 cut(s) 200
AvaII GGWCC 1 cut(s) 502
BaeGI GKGCMC 1 cut(s) 185
BbvI GCAGC 1 cut(s) 218
BccI CCATC 2 cut(s) 12, 494
BceAI ACGGC 1 cut(s) 371
BcgI CGANNNNNNTGC 2 cut(s) 172, 206
BciT130I CCWGG 1 cut(s) 112
BciVI GTATCC 1 cut(s) 313
BclI TGATCA 3 cut(s) 280, 315, 480
BfmI CTRYAG 2 cut(s) 6, 60
BfoI RGCGCY 1 cut(s) 407
BfuI GTATCC 1 cut(s) 313
BisI GCNGC 2 cut(s) 6, 207
BlsI GCNGC 2 cut(s) 7, 208
Bme1390I CCNGG 1 cut(s) 112
Bme18I GGWCC 1 cut(s) 502
BmeT110I CYCGRG 1 cut(s) 200
BmgT120I GGNCC 1 cut(s) 502
BmiI GGNNCC 1 cut(s) 90
BmrFI CCNGG 1 cut(s) 112
BmsI GCATC 1 cut(s) 373
BpmI CTGGAG 1 cut(s) 104
BpuEI CTTGAG 1 cut(s) 395
BsaBI GATNNNNATC 1 cut(s) 485
BsaJI CCNNGG 3 cut(s) 110, 111, 199
Bsc4I CCNNNNNNNGG 1 cut(s) 561
Bse1I ACTGG 2 cut(s) 87, 429
Bse8I GATNNNNATC 1 cut(s) 485
BseBI CCWGG 1 cut(s) 112
BseDI CCNNGG 3 cut(s) 110, 111, 199
BseGI GGATG 4 cut(s) 106, 364, 483, 486
BseJI GATNNNNATC 1 cut(s) 485
BseLI CCNNNNNNNGG 1 cut(s) 561
BseNI ACTGG 2 cut(s) 87, 429
BseRI GAGGAG 1 cut(s) 101
BseSI GKGCMC 1 cut(s) 185
BseXI GCAGC 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 430
BshFI GGCC 2 cut(s) 148, 565
BsiHKCI CYCGRG 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 561
BsnI GGCC 2 cut(s) 148, 565
BsoBI CYCGRG 1 cut(s) 200
Bsp1286I GDGCHC 1 cut(s) 185
Bsp143I GATC 5 cut(s) 115, 280, 315, 435, 480
BspANI GGCC 2 cut(s) 148, 565
BspLI GGNNCC 1 cut(s) 90
BspMAI CTGCAG 2 cut(s) 10, 64
BspPI GGATC 2 cut(s) 123, 443
BsrI ACTGG 2 cut(s) 87, 429
BssECI CCNNGG 3 cut(s) 110, 111, 199
BssMI GATC 5 cut(s) 115, 280, 315, 435, 480
Bst2UI CCWGG 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 416, 555
BstDEI CTNAG 1 cut(s) 508
BstF5I GGATG 4 cut(s) 106, 364, 483, 486
BstH2I RGCGCY 1 cut(s) 407
BstHHI GCGC 1 cut(s) 406
BstKTI GATC 5 cut(s) 118, 283, 318, 438, 483
BstMBI GATC 5 cut(s) 115, 280, 315, 435, 480
BstMWI GCNNNNNNNGC 3 cut(s) 46, 68, 145
BstNI CCWGG 1 cut(s) 112
BstNSI RCATGY 1 cut(s) 143
BstSCI CCNGG 1 cut(s) 110
BstSFI CTRYAG 2 cut(s) 6, 60
BstSLI GKGCMC 1 cut(s) 185
BstV1I GCAGC 1 cut(s) 218
BsuI GTATCC 1 cut(s) 313
BsuRI GGCC 2 cut(s) 148, 565
BtsCI GGATG 4 cut(s) 106, 364, 483, 486
CfoI GCGC 1 cut(s) 406
Cfr13I GGNCC 1 cut(s) 502
Csp6I GTAC 2 cut(s) 129, 324
CviAII CATG 3 cut(s) 74, 140, 567
CviJI RGCY 6 cut(s) 5, 91, 148, 243, 379, 565
CviKI_1 RGCY 6 cut(s) 5, 91, 148, 243, 379, 565
CviQI GTAC 2 cut(s) 129, 324
DdeI CTNAG 1 cut(s) 508
DpnI GATC 5 cut(s) 117, 282, 317, 437, 482
DpnII GATC 5 cut(s) 115, 280, 315, 435, 480
EaeI YGGCCR 1 cut(s) 563
Eam1104I CTCTTC 2 cut(s) 416, 555
EarI CTCTTC 2 cut(s) 416, 555
Eco47I GGWCC 1 cut(s) 502
Eco88I CYCGRG 1 cut(s) 200
EcoRI GAATTC 1 cut(s) 286
EcoRII CCWGG 1 cut(s) 110
FaeI CATG 3 cut(s) 77, 143, 570
FaiI YATR 7 cut(s) 75, 135, 141, 314, 346, 396, 568
FatI CATG 3 cut(s) 73, 139, 566
FbaI TGATCA 3 cut(s) 280, 315, 480
Fnu4HI GCNGC 2 cut(s) 6, 207
FokI GGATG 4 cut(s) 93, 351, 473, 490
Fsp4HI GCNGC 2 cut(s) 6, 207
GlaI GCGC 1 cut(s) 405
GluI GCNGC 2 cut(s) 6, 207
GsaI CCCAGC 1 cut(s) 434
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 407
HaeIII GGCC 2 cut(s) 148, 565
HhaI GCGC 1 cut(s) 406
Hin1II CATG 3 cut(s) 77, 143, 570
Hin6I GCGC 1 cut(s) 404
HinP1I GCGC 1 cut(s) 404
HphI GGTGA 2 cut(s) 253, 475
Hpy188I TCNGA 2 cut(s) 285, 472
HpyCH4V TGCA 3 cut(s) 8, 62, 299
HpyF10VI GCNNNNNNNGC 3 cut(s) 46, 68, 145
HpyF3I CTNAG 1 cut(s) 508
Hsp92II CATG 3 cut(s) 77, 143, 570
HspAI GCGC 1 cut(s) 404
Ksp22I TGATCA 3 cut(s) 280, 315, 480
Kzo9I GATC 5 cut(s) 115, 280, 315, 435, 480
LmnI GCTCC 2 cut(s) 88, 340
LpnPI CCDG 8 cut(s) 26, 68, 97, 124, 130, 351, 410, 416
Lsp1109I GCAGC 1 cut(s) 218
LweI GCATC 1 cut(s) 373
MaeIII GTNAC 1 cut(s) 11
MalI GATC 5 cut(s) 117, 282, 317, 437, 482
MboI GATC 5 cut(s) 115, 280, 315, 435, 480
MboII GAAGA 4 cut(s) 89, 403, 535, 542
MfeI CAATTG 2 cut(s) 122, 294
MhlI GDGCHC 1 cut(s) 185
MluCI AATT 5 cut(s) 122, 171, 286, 294, 520
MmeI TCCRAC 2 cut(s) 202, 439
MnlI CCTC 5 cut(s) 79, 209, 218, 275, 515
MslI CAYNNNNRTG 1 cut(s) 254
MspR9I CCNGG 1 cut(s) 112
MunI CAATTG 2 cut(s) 122, 294
MvaI CCWGG 1 cut(s) 112
MwoI GCNNNNNNNGC 3 cut(s) 46, 68, 145
NdeII GATC 5 cut(s) 115, 280, 315, 435, 480
NlaIII CATG 3 cut(s) 77, 143, 570
NlaIV GGNNCC 1 cut(s) 90
NspI RCATGY 1 cut(s) 143
PasI CCCWGGG 1 cut(s) 111
PkrI GCNGC 2 cut(s) 7, 208
PsiI TTATAA 1 cut(s) 135
Psp6I CCWGG 1 cut(s) 110
PspFI CCCAGC 1 cut(s) 430
PspGI CCWGG 1 cut(s) 110
PspN4I GGNNCC 1 cut(s) 90
PspPI GGNCC 1 cut(s) 502
PstI CTGCAG 2 cut(s) 10, 64
RsaI GTAC 2 cut(s) 130, 325
RsaNI GTAC 2 cut(s) 129, 324
RseI CAYNNNNRTG 1 cut(s) 254
SatI GCNGC 2 cut(s) 6, 207
Sau3AI GATC 5 cut(s) 115, 280, 315, 435, 480
Sau96I GGNCC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 112
SduI GDGCHC 1 cut(s) 185
SetI ASST 5 cut(s) 13, 103, 229, 381, 514
SfaNI GCATC 1 cut(s) 373
SfcI CTRYAG 2 cut(s) 6, 60
SinI GGWCC 1 cut(s) 502
SmiMI CAYNNNNRTG 1 cut(s) 254
SmlI CTYRAG 1 cut(s) 374
SmoI CTYRAG 1 cut(s) 374
Sse9I AATT 5 cut(s) 122, 171, 286, 294, 520
SspI AATATT 1 cut(s) 535
StyD4I CCNGG 1 cut(s) 110
TasI AATT 5 cut(s) 122, 171, 286, 294, 520
TseI GCWGC 2 cut(s) 5, 206
TspDTI ATGAA 3 cut(s) 90, 238, 279
VpaK11BI GGWCC 1 cut(s) 502
XapI RAATTY 1 cut(s) 286
XceI RCATGY 1 cut(s) 143
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.