Rroxscaffold_7G00162350

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000447
Physical Location & Seq
Reverse (-)
4895764 .. 4899776
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00162350.1

Sequence Viewer

Length: 1260 bp
ATGGCGGTGTTCGGAGCAAAATGGCAGGGTGTGAGATCCATGTGCATGATATTGTTCAACTTTGCGGTTGCTTTTGTATTTGTTAAGGCCGAGAGAGGGCTCAGGCTCGAAAGCTCGAGGTTCGATGGAGCAAAGGGATCTGTTTCCGGCAATGATTATCTTTTCCGAGCTGTAAATTTCCTATGGCAATCGGATAAAGTGGGATACGAACACGTTTGGCCGGAGATGAAGTTTGGATGGGAAATTGTTTTGGGGAGTGCTATTGGATTCTTTGGAGCAGCGTTCGGGAGTGTCGGCGGTGTAGGTGGTGGTGGGATTTTTGTTCCCATGCTTAGCCTGATTGTTGGGTTTGATCCAAAGTCGGCAACAGCTATATCGAAATGTATGATCATGGGTGCAGCTGCCTCAACTGTTTACTATAATCTCAAGCTAAGGCACCCCACGCTAGATATGCCGATTATCGACTATGATTTGGCAGTACTTATCCAACCGATGCTCATGATGGGAATTAGTATAGGAGTGGCATTCAATGTGATCTTTGCTGACTGGATGGTCACAGTTTTGCTTATTGTTCTTTTTATAGGCACATCAACAAAAGCATTCTTCAAGGGTGTTGATACATGGACAAAGGAAACTATTATGAAAAGGGAAGCCGCAAAGCGACTGGAGTCAAATGGATCTGGTGTTGATGCAGAATACAAGCCTCTTCCAGCTGGCCCAAAAAATGACCAACAAAAGGAGCCAGAGATCTCTCTTGTGGAGAATGTTTACTGGAAAGAGTTTGGACTTCTGGTTTTTGTCTGGGTCGCATTTCTTGTACTGCAAATTGCCAAGATCCCAGTTTCTTTAGGTGTATCTACGAATTGTAGGAGGATTGCTTGGACTAGGTGGAGGATTCATTATGGGTCCGCTATTTTTGGAGCTCGGAATCCCCCTCAGGTCTCCAGTGCCACAGCTACCTTTGCAATGATGTTCTCATCCTCTATGTCTGTTGTAGAATACTACCTTCTAAAACGATTTCCAGTTCCTTATGCTGCTTACTATACAGCTGTGGCTACCATTGCGGCCATTACAGGACAGCATGTTGTGAGGAGGATGATCACGATCTTTGGGAGAGCATCATTGATCATTTTCATTCTAGCTTTTATGATTTTCATCAGTGCAATCTCACTCGGTGGGGTTGGCATATCGAACATGATTTGGAAGATAAACCACAATGAATACATGGGTTTCGAAAACCTTTGCAAGTATGATGGATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

419

Amino Acids

46.35

Weight (kDa)

9.32

Isoelectric Point (pI)

32.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 87 - 204 1.7e-11 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 551
AccB1I GGYRCC 1 cut(s) 435
AciI CCGC 6 cut(s) 5, 65, 297, 654, 909, 1064
AclWI GGATC 5 cut(s) 30, 145, 347, 685, 829
AcoI YGGCCR 2 cut(s) 218, 1065
AcsI RAATTY 1 cut(s) 175
AdeI CACNNNGTG 1 cut(s) 1175
AfaI GTAC 2 cut(s) 480, 819
AfiI CCNNNNNNNGG 2 cut(s) 96, 736
AflIII ACRYGT 1 cut(s) 211
AgsI TTSAA 3 cut(s) 58, 529, 607
Alw21I GWGCWC 1 cut(s) 925
Alw26I GTCTC 1 cut(s) 946
AlwI GGATC 5 cut(s) 30, 145, 347, 685, 829
Ama87I CYCGRG 1 cut(s) 115
AoxI GGCC 4 cut(s) 87, 218, 715, 1065
ApeKI GCWGC 4 cut(s) 278, 398, 401, 1034
ApoI RAATTY 1 cut(s) 175
AspS9I GGNCC 2 cut(s) 716, 906
AsuII TTCGAA 1 cut(s) 1233
AvaI CYCGRG 1 cut(s) 115
AvaII GGWCC 1 cut(s) 906
AxyI CCTNAGG 1 cut(s) 936
BanI GGYRCC 1 cut(s) 435
BanII GRGCYC 2 cut(s) 102, 925
Bbv12I GWGCWC 1 cut(s) 925
BbvI GCAGC 4 cut(s) 290, 388, 410, 1021
BccI CCATC 5 cut(s) 119, 231, 496, 544, 1247
BciVI GTATCC 1 cut(s) 197
BclI TGATCA 3 cut(s) 387, 1098, 1125
BcoDI GTCTC 1 cut(s) 946
BfaI CTAG 3 cut(s) 446, 885, 1139
BfuI GTATCC 1 cut(s) 197
BglII AGATCT 1 cut(s) 747
BisI GCNGC 6 cut(s) 279, 399, 402, 654, 1035, 1065
BlpI GCTNAGC 1 cut(s) 332
BlsI GCNGC 6 cut(s) 280, 400, 403, 655, 1036, 1066
BmcAI AGTACT 1 cut(s) 480
Bme18I GGWCC 1 cut(s) 906
BmeT110I CYCGRG 1 cut(s) 115
BmgT120I GGNCC 2 cut(s) 716, 906
BmiI GGNNCC 3 cut(s) 437, 741, 907
BmrI ACTGGG 1 cut(s) 833
BmsI GCATC 3 cut(s) 483, 679, 1127
BmuI ACTGGG 1 cut(s) 833
BoxI GACNNNNGTC 1 cut(s) 667
BpmI CTGGAG 2 cut(s) 686, 928
Bpu10I CCTNAGC 2 cut(s) 101, 431
Bpu1102I GCTNAGC 1 cut(s) 332
Bpu14I TTCGAA 1 cut(s) 1233
BpuEI CTTGAG 1 cut(s) 410
BsaBI GATNNNNATC 2 cut(s) 1103, 1154
BsaI GGTCTC 1 cut(s) 946
BsaXI ACNNNNNCTCC 2 cut(s) 215, 245
Bsc4I CCNNNNNNNGG 2 cut(s) 96, 736
Bse1I ACTGG 6 cut(s) 551, 669, 776, 839, 945, 1022
Bse21I CCTNAGG 1 cut(s) 936
Bse3DI GCAATG 3 cut(s) 157, 972, 1059
Bse8I GATNNNNATC 2 cut(s) 1103, 1154
BseGI GGATG 4 cut(s) 242, 555, 977, 1101
BseJI GATNNNNATC 2 cut(s) 1103, 1154
BseLI CCNNNNNNNGG 2 cut(s) 96, 736
BseMI GCAATG 3 cut(s) 157, 972, 1059
BseMII CTCAG 2 cut(s) 115, 950
BseNI ACTGG 6 cut(s) 551, 669, 776, 839, 945, 1022
BseRI GAGGAG 1 cut(s) 1105
BseXI GCAGC 4 cut(s) 290, 388, 410, 1021
BsgI GTGCAG 1 cut(s) 417
BshFI GGCC 4 cut(s) 89, 220, 717, 1067
BshNI GGYRCC 1 cut(s) 435
BsiHKAI GWGCWC 1 cut(s) 925
BsiHKCI CYCGRG 1 cut(s) 115
BsiSI CCGG 2 cut(s) 147, 221
BslI CCNNNNNNNGG 2 cut(s) 96, 736
BsmAI GTCTC 1 cut(s) 946
BsmI GAATGC 2 cut(s) 524, 599
BsnI GGCC 4 cut(s) 89, 220, 717, 1067
Bso31I GGTCTC 1 cut(s) 946
BsoBI CYCGRG 1 cut(s) 115
Bsp119I TTCGAA 1 cut(s) 1233
Bsp1286I GDGCHC 2 cut(s) 102, 925
Bsp1720I GCTNAGC 1 cut(s) 332
BspACI CCGC 6 cut(s) 5, 65, 297, 654, 909, 1064
BspANI GGCC 4 cut(s) 89, 220, 717, 1067
BspCNI CTCAG 2 cut(s) 114, 949
BspHI TCATGA 1 cut(s) 498
BspLI GGNNCC 3 cut(s) 437, 741, 907
BspPI GGATC 5 cut(s) 30, 145, 347, 685, 829
BspT104I TTCGAA 1 cut(s) 1233
BspT107I GGYRCC 1 cut(s) 435
BspTNI GGTCTC 1 cut(s) 946
BsrDI GCAATG 3 cut(s) 157, 972, 1059
BsrI ACTGG 6 cut(s) 551, 669, 776, 839, 945, 1022
Bst4CI ACNGT 2 cut(s) 412, 559
Bst6I CTCTTC 1 cut(s) 711
BstBI TTCGAA 1 cut(s) 1233
BstC8I GCNNGC 1 cut(s) 715
BstDEI CTNAG 4 cut(s) 101, 332, 431, 936
BstF5I GGATG 4 cut(s) 242, 555, 977, 1101
BstMAI GTCTC 1 cut(s) 946
BstMWI GCNNNNNNNGC 4 cut(s) 442, 451, 962, 1061
BstNSI RCATGY 1 cut(s) 1085
BstPAI GACNNNNGTC 1 cut(s) 667
BstV1I GCAGC 4 cut(s) 290, 388, 410, 1021
BstX2I RGATCY 5 cut(s) 35, 137, 677, 747, 834
BstYI RGATCY 5 cut(s) 35, 137, 677, 747, 834
Bsu36I CCTNAGG 1 cut(s) 936
BsuI GTATCC 1 cut(s) 197
BsuRI GGCC 4 cut(s) 89, 220, 717, 1067
BtsCI GGATG 4 cut(s) 242, 555, 977, 1101
BtsIMutI CAGTG 2 cut(s) 952, 1165
Cac8I GCNNGC 1 cut(s) 715
CciI TCATGA 1 cut(s) 498
Cfr13I GGNCC 2 cut(s) 716, 906
Csp6I GTAC 2 cut(s) 479, 818
CviAII CATG 9 cut(s) 40, 46, 328, 391, 499, 621, 1082, 1195, 1225
CviQI GTAC 2 cut(s) 479, 818
DdeI CTNAG 4 cut(s) 101, 332, 431, 936
DraIII CACNNNGTG 1 cut(s) 1175
DrdI GACNNNNNNGTC 1 cut(s) 551
DseDI GACNNNNNNGTC 1 cut(s) 551
EaeI YGGCCR 2 cut(s) 218, 1065
Eam1104I CTCTTC 1 cut(s) 711
EarI CTCTTC 1 cut(s) 711
Ecl136II GAGCTC 1 cut(s) 923
Eco24I GRGCYC 2 cut(s) 102, 925
Eco31I GGTCTC 1 cut(s) 946
Eco47I GGWCC 1 cut(s) 906
Eco53kI GAGCTC 1 cut(s) 923
Eco81I CCTNAGG 1 cut(s) 936
Eco88I CYCGRG 1 cut(s) 115
EcoICRI GAGCTC 1 cut(s) 923
EcoT38I GRGCYC 2 cut(s) 102, 925
FaeI CATG 9 cut(s) 43, 49, 331, 394, 502, 624, 1085, 1198, 1228
FatI CATG 9 cut(s) 39, 45, 327, 390, 498, 620, 1081, 1194, 1224
FbaI TGATCA 3 cut(s) 387, 1098, 1125
Fnu4HI GCNGC 6 cut(s) 279, 399, 402, 654, 1035, 1065
FokI GGATG 4 cut(s) 249, 562, 964, 1108
FriOI GRGCYC 2 cut(s) 102, 925
Fsp4HI GCNGC 6 cut(s) 279, 399, 402, 654, 1035, 1065
FspBI CTAG 3 cut(s) 446, 885, 1139
GluI GCNGC 6 cut(s) 279, 399, 402, 654, 1035, 1065
GsuI CTGGAG 2 cut(s) 686, 928
HaeIII GGCC 4 cut(s) 89, 220, 717, 1067
HapII CCGG 2 cut(s) 147, 221
Hin1II CATG 9 cut(s) 43, 49, 331, 394, 502, 624, 1085, 1198, 1228
HinfI GANTC 4 cut(s) 267, 668, 895, 928
HpaII CCGG 2 cut(s) 147, 221
Hpy166II GTNNAC 2 cut(s) 415, 769
Hpy188I TCNGA 4 cut(s) 14, 167, 193, 927
Hpy188III TCNNGA 3 cut(s) 286, 499, 1102
Hpy8I GTNNAC 2 cut(s) 415, 769
HpyAV CCTTC 1 cut(s) 1016
HpyCH4III ACNGT 2 cut(s) 412, 559
HpyCH4IV ACGT 1 cut(s) 213
HpyCH4V TGCA 7 cut(s) 45, 398, 692, 823, 965, 1163, 1245
HpyF10VI GCNNNNNNNGC 4 cut(s) 442, 451, 962, 1061
HpyF3I CTNAG 4 cut(s) 101, 332, 431, 936
HpySE526I ACGT 1 cut(s) 213
Hsp92II CATG 9 cut(s) 43, 49, 331, 394, 502, 624, 1085, 1198, 1228
Ksp22I TGATCA 3 cut(s) 387, 1098, 1125
LmnI GCTCC 5 cut(s) 14, 128, 275, 739, 920
Lsp1109I GCAGC 4 cut(s) 290, 388, 410, 1021
LweI GCATC 3 cut(s) 483, 679, 1127
MaeI CTAG 3 cut(s) 446, 885, 1139
MaeII ACGT 1 cut(s) 213
MaeIII GTNAC 1 cut(s) 553
MboII GAAGA 3 cut(s) 595, 698, 1216
MflI RGATCY 5 cut(s) 35, 137, 677, 747, 834
MhlI GDGCHC 2 cut(s) 102, 925
MluCI AATT 5 cut(s) 175, 243, 507, 825, 862
MlyI GAGTC 1 cut(s) 677
MmeI TCCRAC 1 cut(s) 511
MseI TTAA 1 cut(s) 84
MslI CAYNNNNRTG 1 cut(s) 44
MspA1I CMGCKG 3 cut(s) 401, 713, 1049
MspI CCGG 2 cut(s) 147, 221
Mva1269I GAATGC 2 cut(s) 524, 599
MwoI GCNNNNNNNGC 4 cut(s) 442, 451, 962, 1061
NlaIII CATG 9 cut(s) 43, 49, 331, 394, 502, 624, 1085, 1198, 1228
NlaIV GGNNCC 3 cut(s) 437, 741, 907
NmeAIII GCCGAG 1 cut(s) 115
NmuCI GTSAC 1 cut(s) 553
NspI RCATGY 1 cut(s) 1085
NspV TTCGAA 1 cut(s) 1233
PaeR7I CTCGAG 1 cut(s) 115
PagI TCATGA 1 cut(s) 498
PctI GAATGC 2 cut(s) 524, 599
PfeI GAWTC 3 cut(s) 267, 895, 928
PkrI GCNGC 6 cut(s) 280, 400, 403, 655, 1036, 1066
PleI GAGTC 1 cut(s) 676
PpsI GAGTC 1 cut(s) 676
PshAI GACNNNNGTC 1 cut(s) 667
Psp124BI GAGCTC 1 cut(s) 925
PspN4I GGNNCC 3 cut(s) 437, 741, 907
PspPI GGNCC 2 cut(s) 716, 906
PspXI VCTCGAGB 1 cut(s) 115
PsuI RGATCY 5 cut(s) 35, 137, 677, 747, 834
PvuII CAGCTG 3 cut(s) 401, 713, 1049
RsaI GTAC 2 cut(s) 480, 819
RsaNI GTAC 2 cut(s) 479, 818
RseI CAYNNNNRTG 1 cut(s) 44
SacI GAGCTC 1 cut(s) 925
SaqAI TTAA 1 cut(s) 84
SatI GCNGC 6 cut(s) 279, 399, 402, 654, 1035, 1065
Sau96I GGNCC 2 cut(s) 716, 906
ScaI AGTACT 1 cut(s) 480
SchI GAGTC 1 cut(s) 677
SduI GDGCHC 2 cut(s) 102, 925
SfaNI GCATC 3 cut(s) 483, 679, 1127
Sfr274I CTCGAG 1 cut(s) 115
SfuI TTCGAA 1 cut(s) 1233
SinI GGWCC 1 cut(s) 906
SlaI CTCGAG 1 cut(s) 115
SmiMI CAYNNNNRTG 1 cut(s) 44
SmlI CTYRAG 2 cut(s) 115, 425
SmoI CTYRAG 2 cut(s) 115, 425
Sse9I AATT 5 cut(s) 175, 243, 507, 825, 862
SsiI CCGC 6 cut(s) 5, 65, 297, 654, 909, 1064
SspMI CTAG 3 cut(s) 446, 885, 1139
SstI GAGCTC 1 cut(s) 925
TaaI ACNGT 2 cut(s) 412, 559
TaiI ACGT 1 cut(s) 216
TaqI TCGA 7 cut(s) 108, 116, 123, 377, 462, 1190, 1233
TasI AATT 5 cut(s) 175, 243, 507, 825, 862
TatI WGTACW 2 cut(s) 478, 817
TauI GCSGC 2 cut(s) 656, 1067
TfiI GAWTC 3 cut(s) 267, 895, 928
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 952, 1165
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 4 cut(s) 278, 398, 401, 1034
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 6 cut(s) 242, 656, 887, 1123, 1144, 1233
TspRI CASTG 2 cut(s) 952, 1165
VpaK11BI GGWCC 1 cut(s) 906
XapI RAATTY 1 cut(s) 175
XceI RCATGY 1 cut(s) 1085
XhoI CTCGAG 1 cut(s) 115
XspI CTAG 3 cut(s) 446, 885, 1139
ZrmI AGTACT 1 cut(s) 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.