RchiOBHm_Chr2g0139121

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000447
Physical Location & Seq
Reverse (-)
56745427 .. 56746069
643 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50970

Sequence Viewer

Length: 393 bp
ATGGACATAGTAATTACTTGGTGCCTGGAAATATGTAGTTCAGAAATTAACTTTGTTAGGGATGTCATGCTGCAGAAAATAAGATTTGATTGGAAAATTGTGGTGGGCACGATAATCGCTTTCCTCGGGGCAGCATTTGGGAGTGTTGGAGGTGTTGGTGGGGGTGGCTTTTTCATTCCAATGCTCACCCTCATCATTGGTTTTGATCAGAAATCATCAATCGCAGTATCCAAATGTATGATCACAGGTACATCAACGGCTACTGTGTTATACAACTTACGGCGAAGGCATCCCACACTTGAGCTTCCCATTATTGACTATGATTTGGCGCTTCTCTTCCAACCATTACTGGTGCTGGGGATCAACATTTTCTTTGAATGTGGTTCTTTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

130

Amino Acids

14.31

Weight (kDa)

5.67

Isoelectric Point (pI)

41.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 38 - 120 1.2e-07 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 21
AclWI GGATC 1 cut(s) 368
AfaI GTAC 1 cut(s) 250
AgsI TTSAA 1 cut(s) 377
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AlwI GGATC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 125
ApeKI GCWGC 2 cut(s) 70, 131
AspLEI GCGC 1 cut(s) 331
AsuHPI GGTGA 1 cut(s) 178
AvaI CYCGRG 1 cut(s) 125
BaeGI GKGCMC 1 cut(s) 110
BanI GGYRCC 1 cut(s) 21
BbvI GCAGC 2 cut(s) 57, 143
BceAI ACGGC 2 cut(s) 273, 296
BcgI CGANNNNNNTGC 2 cut(s) 97, 131
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 2 cut(s) 205, 240
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 332
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 2 cut(s) 71, 132
BlsI GCNGC 2 cut(s) 72, 133
Bme1390I CCNGG 1 cut(s) 26
BmeT110I CYCGRG 1 cut(s) 125
BmiI GGNNCC 1 cut(s) 23
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 320
BsaJI CCNNGG 1 cut(s) 124
Bse1I ACTGG 1 cut(s) 354
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 2 cut(s) 67, 289
BseNI ACTGG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 2 cut(s) 57, 143
BseYI CCCAGC 1 cut(s) 355
BshNI GGYRCC 1 cut(s) 21
BsiHKCI CYCGRG 1 cut(s) 125
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 3 cut(s) 205, 240, 360
BspLI GGNNCC 1 cut(s) 23
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 1 cut(s) 368
BspT107I GGYRCC 1 cut(s) 21
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 3 cut(s) 205, 240, 360
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 1 cut(s) 341
BstF5I GGATG 2 cut(s) 67, 289
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 3 cut(s) 208, 243, 363
BstMBI GATC 3 cut(s) 205, 240, 360
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 57, 143
BsuI GTATCC 1 cut(s) 238
BtsCI GGATG 2 cut(s) 67, 289
CfoI GCGC 1 cut(s) 331
Csp6I GTAC 1 cut(s) 249
CviAII CATG 1 cut(s) 67
CviJI RGCY 3 cut(s) 168, 260, 304
CviKI_1 RGCY 3 cut(s) 168, 260, 304
CviQI GTAC 1 cut(s) 249
DpnI GATC 3 cut(s) 207, 242, 362
DpnII GATC 3 cut(s) 205, 240, 360
Eam1104I CTCTTC 1 cut(s) 341
EarI CTCTTC 1 cut(s) 341
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 1 cut(s) 70
FaiI YATR 6 cut(s) 8, 34, 68, 239, 271, 321
FatI CATG 1 cut(s) 66
FbaI TGATCA 2 cut(s) 205, 240
Fnu4HI GCNGC 2 cut(s) 71, 132
FokI GGATG 2 cut(s) 74, 276
Fsp4HI GCNGC 2 cut(s) 71, 132
GlaI GCGC 1 cut(s) 330
GluI GCNGC 2 cut(s) 71, 132
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 332
HhaI GCGC 1 cut(s) 331
Hin1II CATG 1 cut(s) 70
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HphI GGTGA 1 cut(s) 178
Hpy188I TCNGA 3 cut(s) 43, 210, 392
HpyAV CCTTC 1 cut(s) 279
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 73
Hsp92II CATG 1 cut(s) 70
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 2 cut(s) 205, 240
Kzo9I GATC 3 cut(s) 205, 240, 360
LpnPI CCDG 5 cut(s) 11, 38, 231, 335, 341
Lsp1109I GCAGC 2 cut(s) 57, 143
LweI GCATC 1 cut(s) 298
MalI GATC 3 cut(s) 207, 242, 362
MboI GATC 3 cut(s) 205, 240, 360
MboII GAAGA 1 cut(s) 328
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 3 cut(s) 12, 45, 96
MmeI TCCRAC 2 cut(s) 127, 364
MnlI CCTC 3 cut(s) 134, 143, 200
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 26
MvaI CCWGG 1 cut(s) 26
NdeII GATC 3 cut(s) 205, 240, 360
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 23
PkrI GCNGC 2 cut(s) 72, 133
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 24
PspN4I GGNNCC 1 cut(s) 23
PstI CTGCAG 1 cut(s) 75
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 71, 132
Sau3AI GATC 3 cut(s) 205, 240, 360
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 110
SetI ASST 3 cut(s) 154, 250, 306
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 71
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 3 cut(s) 12, 45, 96
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 265
TasI AATT 3 cut(s) 12, 45, 96
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 2 cut(s) 70, 131
TspDTI ATGAA 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.