Rh7DG471900

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000447
Physical Location & Seq
Reverse (-)
67463926 .. 67476330
12405 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG471900.1

Sequence Viewer

Length: 708 bp
ATGATCTCCGGCGGCAGGAAGCTGAAGAAATCGCGGTTCCAGACCTTGATCGTCAGCGAGAACGATAGGTCCAGGGTGAGCTTTTCCGACGAGTACTTGGACTTCGACGTGGTTGAATTGGGAATAAGATTTGGCTGGAAAGTTGTGGTTGGGACACTACTTGGATTTTTTGGAGCAGCATTTGGAAGTGTGGGAGGTGTTGGAGGGGGTGGCTTTTATGTTCCAATGCTCACTCTCATTATTGGCTTTGATCAAAAATCGTCAACAGCAATATCAAAATGTATGATCACCGCTGGAGCAGTTGCAACTGTCTTGTACAATTTAAGGCTAAGGCATCCAACTCTCGAGTTGCCACTCATCAACTATGATCTTGCCCTATTATTCCAACCAATGTTAATTTTGGGAATCAGCATTGGAGTTTCTTTGAATGTTGTTCTTCCTGAATGGTTGATTACCATCTTAGTAATTGTCGTTCTCTTAGCTCTGTACTTTGCTGGTGTGGCTACTGTTTCTGCGATCATCGGGCAACATGTAGGAGAGAAAGTTATTAAAGCATTGGGAAGAGCATCTTTGATCGTCTTCATTCTAGCTTTCACAGCATTTGTGAGTGCACTCTCATTAGGAGGAGTAGGCATAGCACATTTGGTTACAAAGATTCAGCACAAGGAGTACTTGGGGTTTGAGAATATGTGCACTCATAAATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

235

Amino Acids

25.28

Weight (kDa)

9.27

Isoelectric Point (pI)

26.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 48 - 162 5.9e-11 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 34
AciI CCGC 3 cut(s) 12, 34, 291
AcuI CTGAAG 1 cut(s) 44
AfaI GTAC 4 cut(s) 95, 317, 488, 671
AfiI CCNNNNNNNGG 1 cut(s) 15
AflIII ACRYGT 1 cut(s) 529
AgsI TTSAA 2 cut(s) 116, 427
AjiI CACGTC 1 cut(s) 109
AjnI CCWGG 1 cut(s) 71
AloI GAACNNNNNNTCC 2 cut(s) 53, 85
AluBI AGCT 4 cut(s) 22, 81, 482, 590
AluI AGCT 4 cut(s) 22, 81, 482, 590
Alw21I GWGCWC 2 cut(s) 613, 695
Alw44I GTGCAC 2 cut(s) 609, 691
Ama87I CYCGRG 1 cut(s) 344
ApaLI GTGCAC 2 cut(s) 609, 691
ApeKI GCWGC 1 cut(s) 176
AspS9I GGNCC 1 cut(s) 69
AsuHPI GGTGA 2 cut(s) 88, 280
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 69
BaeGI GKGCMC 2 cut(s) 613, 695
BarI GAAGNNNNNNTAC 2 cut(s) 86, 118
BbsI GAAGAC 1 cut(s) 571
Bbv12I GWGCWC 2 cut(s) 613, 695
BbvI GCAGC 1 cut(s) 188
BccI CCATC 1 cut(s) 464
BciT130I CCWGG 1 cut(s) 73
BclI TGATCA 2 cut(s) 250, 285
BfaI CTAG 1 cut(s) 587
BisI GCNGC 2 cut(s) 13, 177
BlsI GCNGC 2 cut(s) 14, 178
BmcAI AGTACT 2 cut(s) 95, 671
Bme1390I CCNGG 1 cut(s) 73
Bme18I GGWCC 1 cut(s) 69
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 69
BmiI GGNNCC 1 cut(s) 38
BmrFI CCNGG 1 cut(s) 73
BmsI GCATC 2 cut(s) 343, 575
BpiI GAAGAC 1 cut(s) 571
BpmI CTGGAG 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 455
BsaJI CCNNGG 1 cut(s) 72
BsaXI ACNNNNNCTCC 2 cut(s) 528, 558
Bsc4I CCNNNNNNNGG 1 cut(s) 15
Bse8I GATNNNNATC 1 cut(s) 455
BseBI CCWGG 1 cut(s) 73
BseDI CCNNGG 1 cut(s) 72
BseGI GGATG 1 cut(s) 334
BseJI GATNNNNATC 1 cut(s) 455
BseLI CCNNNNNNNGG 1 cut(s) 15
BseRI GAGGAG 1 cut(s) 639
BseSI GKGCMC 2 cut(s) 613, 695
BseXI GCAGC 1 cut(s) 188
Bsh1236I CGCG 1 cut(s) 34
BsiHKAI GWGCWC 2 cut(s) 613, 695
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 1 cut(s) 9
BslFI GGGAC 1 cut(s) 166
BslI CCNNNNNNNGG 1 cut(s) 15
BsmFI GGGAC 1 cut(s) 166
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 613, 695
Bsp1407I TGTACA 1 cut(s) 315
Bsp143I GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
BspACI CCGC 3 cut(s) 12, 34, 291
BspFNI CGCG 1 cut(s) 34
BspLI GGNNCC 1 cut(s) 38
BspQI GCTCTTC 1 cut(s) 556
BsrGI TGTACA 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 72
BssMI GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
Bst2UI CCWGG 1 cut(s) 73
Bst4CI ACNGT 2 cut(s) 310, 508
Bst6I CTCTTC 1 cut(s) 556
BstAUI TGTACA 1 cut(s) 315
BstDEI CTNAG 3 cut(s) 329, 460, 478
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 1 cut(s) 34
BstKTI GATC 7 cut(s) 6, 51, 253, 288, 370, 519, 576
BstMBI GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
BstMWI GCNNNNNNNGC 2 cut(s) 500, 596
BstNI CCWGG 1 cut(s) 73
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 1 cut(s) 71
BstSLI GKGCMC 2 cut(s) 613, 695
BstUI CGCG 1 cut(s) 34
BstV1I GCAGC 1 cut(s) 188
BstV2I GAAGAC 1 cut(s) 571
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 69
Csp6I GTAC 4 cut(s) 94, 316, 487, 670
CviAII CATG 1 cut(s) 530
CviJI RGCY 9 cut(s) 22, 81, 135, 213, 246, 328, 482, 503, 590
CviKI_1 RGCY 9 cut(s) 22, 81, 135, 213, 246, 328, 482, 503, 590
CviQI GTAC 4 cut(s) 94, 316, 487, 670
DdeI CTNAG 3 cut(s) 329, 460, 478
DpnI GATC 7 cut(s) 5, 50, 252, 287, 369, 518, 575
DpnII GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
Eam1104I CTCTTC 1 cut(s) 556
EarI CTCTTC 1 cut(s) 556
Eco47I GGWCC 1 cut(s) 69
Eco57I CTGAAG 1 cut(s) 44
Eco88I CYCGRG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 71
FaeI CATG 1 cut(s) 533
FaiI YATR 7 cut(s) 219, 284, 366, 531, 635, 689, 699
FalI AAGNNNNNCTT 4 cut(s) 553, 585, 656, 688
FaqI GGGAC 1 cut(s) 166
FatI CATG 1 cut(s) 529
FbaI TGATCA 2 cut(s) 250, 285
Fnu4HI GCNGC 2 cut(s) 13, 177
FokI GGATG 1 cut(s) 321
Fsp4HI GCNGC 2 cut(s) 13, 177
FspBI CTAG 1 cut(s) 587
GluI GCNGC 2 cut(s) 13, 177
GsuI CTGGAG 1 cut(s) 315
HapII CCGG 1 cut(s) 9
Hin1II CATG 1 cut(s) 533
HincII GTYRAC 1 cut(s) 264
HindII GTYRAC 1 cut(s) 264
HinfI GANTC 2 cut(s) 405, 655
HpaII CCGG 1 cut(s) 9
HphI GGTGA 2 cut(s) 88, 280
Hpy166II GTNNAC 3 cut(s) 264, 611, 693
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 40, 344, 440
Hpy8I GTNNAC 3 cut(s) 264, 611, 693
Hpy99I CGWCG 2 cut(s) 92, 110
HpyCH4III ACNGT 2 cut(s) 310, 508
HpyCH4IV ACGT 1 cut(s) 108
HpyCH4V TGCA 3 cut(s) 305, 611, 693
HpyF10VI GCNNNNNNNGC 2 cut(s) 500, 596
HpyF3I CTNAG 3 cut(s) 329, 460, 478
HpySE526I ACGT 1 cut(s) 108
Hsp92II CATG 1 cut(s) 533
Ksp22I TGATCA 2 cut(s) 250, 285
Kzo9I GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
LguI GCTCTTC 1 cut(s) 556
LmnI GCTCC 2 cut(s) 173, 296
LpnPI CCDG 8 cut(s) 22, 53, 58, 85, 121, 279, 453, 480
Lsp1109I GCAGC 1 cut(s) 188
LweI GCATC 2 cut(s) 343, 575
MaeI CTAG 1 cut(s) 587
MaeII ACGT 1 cut(s) 108
MaeIII GTNAC 1 cut(s) 646
MalI GATC 7 cut(s) 5, 50, 252, 287, 369, 518, 575
MboI GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
MboII GAAGA 4 cut(s) 37, 428, 571, 573
MhlI GDGCHC 2 cut(s) 613, 695
MluCI AATT 4 cut(s) 116, 319, 396, 465
MmeI TCCRAC 4 cut(s) 111, 181, 362, 409
MnlI CCTC 3 cut(s) 188, 197, 617
MseI TTAA 3 cut(s) 323, 395, 549
MspA1I CMGCKG 1 cut(s) 293
MspI CCGG 1 cut(s) 9
MspR9I CCNGG 1 cut(s) 73
MvaI CCWGG 1 cut(s) 73
MvnI CGCG 1 cut(s) 34
MwoI GCNNNNNNNGC 2 cut(s) 500, 596
NdeII GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
NlaIII CATG 1 cut(s) 533
NlaIV GGNNCC 1 cut(s) 38
NspI RCATGY 1 cut(s) 533
PaeR7I CTCGAG 1 cut(s) 344
PciI ACATGT 1 cut(s) 529
PciSI GCTCTTC 1 cut(s) 556
PfeI GAWTC 2 cut(s) 405, 655
PkrI GCNGC 2 cut(s) 14, 178
PscI ACATGT 1 cut(s) 529
Psp6I CCWGG 1 cut(s) 71
PspGI CCWGG 1 cut(s) 71
PspN4I GGNNCC 1 cut(s) 38
PspPI GGNCC 1 cut(s) 69
PsrI GAACNNNNNNTAC 2 cut(s) 456, 488
RsaI GTAC 4 cut(s) 95, 317, 488, 671
RsaNI GTAC 4 cut(s) 94, 316, 487, 670
SapI GCTCTTC 1 cut(s) 556
SaqAI TTAA 3 cut(s) 323, 395, 549
SatI GCNGC 2 cut(s) 13, 177
Sau3AI GATC 7 cut(s) 3, 48, 250, 285, 367, 516, 573
Sau96I GGNCC 1 cut(s) 69
ScaI AGTACT 2 cut(s) 95, 671
ScrFI CCNGG 1 cut(s) 73
SduI GDGCHC 2 cut(s) 613, 695
SetI ASST 8 cut(s) 24, 47, 71, 83, 111, 199, 484, 592
SfaNI GCATC 2 cut(s) 343, 575
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 69
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
Sse9I AATT 4 cut(s) 116, 319, 396, 465
SsiI CCGC 3 cut(s) 12, 34, 291
SspMI CTAG 1 cut(s) 587
StyD4I CCNGG 1 cut(s) 71
TaaI ACNGT 2 cut(s) 310, 508
TaiI ACGT 1 cut(s) 111
TaqI TCGA 2 cut(s) 105, 345
TasI AATT 4 cut(s) 116, 319, 396, 465
TatI WGTACW 4 cut(s) 93, 315, 486, 669
TauI GCSGC 1 cut(s) 15
TfiI GAWTC 2 cut(s) 405, 655
Tru1I TTAA 3 cut(s) 323, 395, 549
Tru9I TTAA 3 cut(s) 323, 395, 549
TseI GCWGC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 571
VneI GTGCAC 2 cut(s) 609, 691
VpaK11BI GGWCC 1 cut(s) 69
XceI RCATGY 1 cut(s) 533
XhoI CTCGAG 1 cut(s) 344
XspI CTAG 1 cut(s) 587
ZrmI AGTACT 2 cut(s) 95, 671
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.