Rroxscaffold_2G00106000

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0000447
Physical Location & Seq
Reverse (-)
29536526 .. 29539913
3388 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00106000.1

Sequence Viewer

Length: 1452 bp
ATGGCATGGAGCAGATCATCAAATTGGTGGAGGCTAAGGTTGATAGCAAAGGTAGGGATTTGTTTTCTTGTTTTAGTGGCATCTGTTTCAGCAACTGAAATTTTGGAGCAACAAGCTTCTTCTAGTCAGAATCATGGGAAAGAGGTTGAATCTAATTACTTAGTCAGCGTGTCAAAATCGCATACCGGTGGAGTTGGCTATAAGCATGTCTGGCCTGAAATAAGATTTGGCTGGAAAATTATGGTTGGTACAGCAATTGGATTCCTTGGAGCAGCATTTGGAAGTGTGGGAGGTGTTGGAGGGGGTGGCATTTTTGTTCCAATGCTCACTCTCATGATTGGCTTTGATCAGAAATCAGCAACTGCAATATCGAAATGCATGATCACTGGTGGAGCAGCTGCCACTGTGTTGTACAATCTAAGGCTGAGGCATCCAACACTTGAGTTGCCAATTATTGACTATGATCTTGCAGTTCTATTCCAACCAATGTTAGTTTTGGGAATCAGTATTGGAGTTTCCCTGAATGTTGTTCTTTCTGATTGGATGATAACCATCTTACTAATTATTATTCTCTTAGGTACATCAACTAGATCCTTCTTCAAAGGTGTTGAGACATGGAAGAAAGAAACTAAAACAAAAAAGAATTTACTGGACGCTTCCAAAAGCTTGGAATCAAAAGGTGTTAGCATCAGAGACGTTGAAGACAAAAATACTGCTAGTGGTACAACCAATGAGCCAACAGAAACCAAGCAAGCTAAGAGAAGAGAGGTTTCTATTCTTGAAAATGTTGGCTGGAGGCAACTTGGAATTATTGCTACTGTGTGGGTCATAATTCTTGGATTGCAGATTGCTAAGAATTATGTGGCAAAATGCTCGGTGGCATACTGGTCACTAGATCTCTTACAGATTCCTGTGACTCTTGCAGTAACTTCATATGAGGTAATTAAACTGTCCCAAGGGAAGAGAATACTTGCATCAAAGGGATCAGAAACAGGTGCAAACTGGAGAGTTTACAAGCTTGTTTCTTATTGTGTCTGTGGCATAGCAGCTGGGCTAGTTGGTGGACTGCTTGGTCTTGGTGGAGGCTTTATTATGGGTCCAATGTTTTTGGAAATGGGGATCCCTCCTCAGGTGTCAAGTGCCACAGCCACATTTATCATGACATTCTCTTCATCCATGTCTGTGGTGGAATACTACCTCCTAAACCGATTTCCTATTCCTTATGCACTCTATTTTGCTGGTGTGGCTACTGTTTCTGCCATCATAGGGCAACATGTAGTAGGAAAAGTAATCAAAGTATTAGGAAGAGCATCTCTGATCATCTTCATTCTATCTTTGACAATATTTGTGAGTGCACTCACATTAGGAGGGGTAGGCATAGCGCACATGGTTAAAAAGATTGAGCGCAAGCAGTACTTGTGGTTTGAGCACATGTGCACTCATATATCCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

483

Amino Acids

52.38

Weight (kDa)

9.55

Isoelectric Point (pI)

30.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 85 - 201 4.4e-13 Sulfite exporter TauE/SafE
TauE PF01925 334 - 447 5.3e-12 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1071
AclWI GGATC 4 cut(s) 585, 991, 1114, 1127
AcsI RAATTY 2 cut(s) 99, 643
AfaI GTAC 5 cut(s) 250, 413, 580, 724, 1415
AfiI CCNNNNNNNGG 2 cut(s) 1129, 1266
AflIII ACRYGT 2 cut(s) 1273, 1431
AgeI ACCGGT 1 cut(s) 185
AgsI TTSAA 4 cut(s) 149, 601, 701, 782
AjuI GAANNNNNNNTTGG 2 cut(s) 210, 242
AluBI AGCT 6 cut(s) 116, 398, 666, 755, 1018, 1049
AluI AGCT 6 cut(s) 116, 398, 666, 755, 1018, 1049
Alw21I GWGCWC 3 cut(s) 1357, 1431, 1439
Alw26I GTCTC 2 cut(s) 605, 687
Alw44I GTGCAC 2 cut(s) 1353, 1435
AlwI GGATC 4 cut(s) 585, 991, 1114, 1127
AlwNI CAGNNNCTG 2 cut(s) 95, 362
AoxI GGCC 1 cut(s) 212
ApaLI GTGCAC 2 cut(s) 1353, 1435
ApeKI GCWGC 4 cut(s) 272, 395, 398, 1046
ApoI RAATTY 2 cut(s) 99, 643
AsiGI ACCGGT 1 cut(s) 185
AspLEI GCGC 2 cut(s) 1384, 1407
AspS9I GGNCC 1 cut(s) 1097
AvaII GGWCC 1 cut(s) 1097
AxyI CCTNAGG 1 cut(s) 1128
BaeGI GKGCMC 2 cut(s) 1357, 1439
BamHI GGATCC 1 cut(s) 1119
BbsI GAAGAC 1 cut(s) 708
Bbv12I GWGCWC 3 cut(s) 1357, 1431, 1439
BbvCI CCTCAGC 1 cut(s) 425
BbvI GCAGC 4 cut(s) 284, 385, 407, 1058
BccI CCATC 2 cut(s) 560, 1268
BcgI CGANNNNNNTGC 2 cut(s) 855, 889
BclI TGATCA 3 cut(s) 346, 381, 1317
BcoDI GTCTC 2 cut(s) 605, 687
BfaI CTAG 5 cut(s) 123, 588, 717, 893, 1055
BglII AGATCT 1 cut(s) 895
BisI GCNGC 4 cut(s) 273, 396, 399, 1047
BlsI GCNGC 4 cut(s) 274, 397, 400, 1048
BmcAI AGTACT 1 cut(s) 1415
Bme18I GGWCC 1 cut(s) 1097
BmgT120I GGNCC 1 cut(s) 1097
BmiI GGNNCC 2 cut(s) 1098, 1121
BmsI GCATC 5 cut(s) 89, 439, 696, 983, 1319
BpiI GAAGAC 1 cut(s) 708
BpmI CTGGAG 2 cut(s) 814, 1024
Bpu10I CCTNAGC 2 cut(s) 35, 425
BpuEI CTTGAG 1 cut(s) 461
BsaBI GATNNNNATC 1 cut(s) 551
BsaJI CCNNGG 2 cut(s) 265, 955
BsaWI WCCGGW 1 cut(s) 185
Bsc4I CCNNNNNNNGG 2 cut(s) 1129, 1266
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 4 cut(s) 391, 654, 890, 1007
Bse21I CCTNAGG 1 cut(s) 1128
Bse8I GATNNNNATC 1 cut(s) 551
BseDI CCNNGG 2 cut(s) 265, 955
BseGI GGATG 3 cut(s) 430, 549, 1172
BseJI GATNNNNATC 1 cut(s) 551
BseLI CCNNNNNNNGG 2 cut(s) 1129, 1266
BseMII CTCAG 2 cut(s) 416, 1142
BseNI ACTGG 4 cut(s) 391, 654, 890, 1007
BseRI GAGGAG 1 cut(s) 1116
BseSI GKGCMC 2 cut(s) 1357, 1439
BseXI GCAGC 4 cut(s) 284, 385, 407, 1058
BseYI CCCAGC 1 cut(s) 1049
BshFI GGCC 1 cut(s) 214
BshTI ACCGGT 1 cut(s) 185
BsiHKAI GWGCWC 3 cut(s) 1357, 1431, 1439
BsiSI CCGG 1 cut(s) 186
BslFI GGGAC 1 cut(s) 937
BslI CCNNNNNNNGG 2 cut(s) 1129, 1266
BsmAI GTCTC 2 cut(s) 605, 687
BsmBI CGTCTC 1 cut(s) 687
BsmFI GGGAC 1 cut(s) 937
BsnI GGCC 1 cut(s) 214
Bsp1286I GDGCHC 3 cut(s) 1357, 1431, 1439
Bsp1407I TGTACA 1 cut(s) 411
Bsp143I GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
BspANI GGCC 1 cut(s) 214
BspCNI CTCAG 2 cut(s) 417, 1141
BspHI TCATGA 2 cut(s) 333, 1158
BspLI GGNNCC 2 cut(s) 1098, 1121
BspPI GGATC 4 cut(s) 585, 991, 1114, 1127
BspQI GCTCTTC 1 cut(s) 1300
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 1 cut(s) 411
BsrI ACTGG 4 cut(s) 391, 654, 890, 1007
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 2 cut(s) 265, 955
BssMI GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
BssT1I CCWWGG 2 cut(s) 265, 955
Bst4CI ACNGT 4 cut(s) 406, 820, 951, 1252
Bst6I CTCTTC 4 cut(s) 757, 956, 1174, 1300
BstAUI TGTACA 1 cut(s) 411
BstC8I GCNNGC 2 cut(s) 753, 1409
BstDEI CTNAG 8 cut(s) 35, 160, 419, 425, 574, 756, 852, 1128
BstF5I GGATG 3 cut(s) 430, 549, 1172
BstHHI GCGC 2 cut(s) 1384, 1407
BstKTI GATC 9 cut(s) 17, 349, 384, 466, 593, 898, 986, 1122, 1320
BstMAI GTCTC 2 cut(s) 605, 687
BstMBI GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
BstMWI GCNNNNNNNGC 2 cut(s) 211, 1244
BstNSI RCATGY 3 cut(s) 209, 1277, 1435
BstSLI GKGCMC 2 cut(s) 1357, 1439
BstV1I GCAGC 4 cut(s) 284, 385, 407, 1058
BstV2I GAAGAC 1 cut(s) 708
BstX2I RGATCY 3 cut(s) 590, 895, 1119
BstXI CCANNNNNNTGG 2 cut(s) 667, 1183
BstYI RGATCY 3 cut(s) 590, 895, 1119
Bsu36I CCTNAGG 1 cut(s) 1128
BsuRI GGCC 1 cut(s) 214
BtsCI GGATG 3 cut(s) 430, 549, 1172
BtsIMutI CAGTG 2 cut(s) 384, 402
Cac8I GCNNGC 2 cut(s) 753, 1409
CaiI CAGNNNCTG 2 cut(s) 95, 362
CciI TCATGA 2 cut(s) 333, 1158
CfoI GCGC 2 cut(s) 1384, 1407
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 1 cut(s) 1097
CseI GACGC 1 cut(s) 662
Csp6I GTAC 5 cut(s) 249, 412, 579, 723, 1414
CspAI ACCGGT 1 cut(s) 185
CviQI GTAC 5 cut(s) 249, 412, 579, 723, 1414
DdeI CTNAG 8 cut(s) 35, 160, 419, 425, 574, 756, 852, 1128
DpnI GATC 9 cut(s) 16, 348, 383, 465, 592, 897, 985, 1121, 1319
DpnII GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
DrdI GACNNNNNNGTC 1 cut(s) 1071
DseDI GACNNNNNNGTC 1 cut(s) 1071
Eam1104I CTCTTC 4 cut(s) 757, 956, 1174, 1300
EarI CTCTTC 4 cut(s) 757, 956, 1174, 1300
Eco130I CCWWGG 2 cut(s) 265, 955
Eco47I GGWCC 1 cut(s) 1097
Eco81I CCTNAGG 1 cut(s) 1128
EcoT14I CCWWGG 2 cut(s) 265, 955
EcoT22I ATGCAT 1 cut(s) 380
ErhI CCWWGG 2 cut(s) 265, 955
Esp3I CGTCTC 1 cut(s) 687
FalI AAGNNNNNCTT 2 cut(s) 1400, 1432
FaqI GGGAC 1 cut(s) 937
FauNDI CATATG 1 cut(s) 934
FbaI TGATCA 3 cut(s) 346, 381, 1317
Fnu4HI GCNGC 4 cut(s) 273, 396, 399, 1047
FokI GGATG 3 cut(s) 417, 556, 1159
Fsp4HI GCNGC 4 cut(s) 273, 396, 399, 1047
FspBI CTAG 5 cut(s) 123, 588, 717, 893, 1055
GlaI GCGC 2 cut(s) 1383, 1406
GluI GCNGC 4 cut(s) 273, 396, 399, 1047
GsaI CCCAGC 1 cut(s) 1053
GsuI CTGGAG 2 cut(s) 814, 1024
HaeIII GGCC 1 cut(s) 214
HapII CCGG 1 cut(s) 186
HgaI GACGC 1 cut(s) 662
HhaI GCGC 2 cut(s) 1384, 1407
Hin6I GCGC 2 cut(s) 1382, 1405
HinP1I GCGC 2 cut(s) 1382, 1405
HindIII AAGCTT 3 cut(s) 114, 664, 1016
HinfI GANTC 7 cut(s) 130, 149, 261, 501, 671, 907, 916
HpaII CCGG 1 cut(s) 186
Hpy166II GTNNAC 4 cut(s) 1012, 1064, 1355, 1437
Hpy188I TCNGA 6 cut(s) 129, 351, 538, 692, 988, 1317
Hpy188III TCNNGA 3 cut(s) 334, 779, 1159
Hpy8I GTNNAC 4 cut(s) 1012, 1064, 1355, 1437
HpyAV CCTTC 1 cut(s) 604
HpyCH4III ACNGT 4 cut(s) 406, 820, 951, 1252
HpyCH4IV ACGT 1 cut(s) 696
HpyF10VI GCNNNNNNNGC 2 cut(s) 211, 1244
HpyF3I CTNAG 8 cut(s) 35, 160, 419, 425, 574, 756, 852, 1128
HpySE526I ACGT 1 cut(s) 696
HspAI GCGC 2 cut(s) 1382, 1405
Ksp22I TGATCA 3 cut(s) 346, 381, 1317
Kzo9I GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
LguI GCTCTTC 1 cut(s) 1300
LmnI GCTCC 4 cut(s) 9, 106, 269, 392
Lsp1109I GCAGC 4 cut(s) 284, 385, 407, 1058
LweI GCATC 5 cut(s) 89, 439, 696, 983, 1319
MaeI CTAG 5 cut(s) 123, 588, 717, 893, 1055
MaeII ACGT 1 cut(s) 696
MaeIII GTNAC 3 cut(s) 888, 913, 925
MalI GATC 9 cut(s) 16, 348, 383, 465, 592, 897, 985, 1121, 1319
MboI GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
MboII GAAGA 9 cut(s) 111, 589, 631, 713, 774, 973, 1161, 1315, 1317
MfeI CAATTG 1 cut(s) 255
MflI RGATCY 3 cut(s) 590, 895, 1119
MhlI GDGCHC 3 cut(s) 1357, 1431, 1439
MlyI GAGTC 1 cut(s) 910
MmeI TCCRAC 3 cut(s) 277, 458, 505
Mph1103I ATGCAT 1 cut(s) 380
MseI TTAA 2 cut(s) 945, 1392
MslI CAYNNNNRTG 3 cut(s) 186, 332, 1181
MspA1I CMGCKG 2 cut(s) 398, 1049
MspI CCGG 1 cut(s) 186
MunI CAATTG 1 cut(s) 255
MwoI GCNNNNNNNGC 2 cut(s) 211, 1244
NdeI CATATG 1 cut(s) 934
NdeII GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
NlaIV GGNNCC 2 cut(s) 1098, 1121
NmuCI GTSAC 2 cut(s) 888, 913
NsiI ATGCAT 1 cut(s) 380
NspI RCATGY 3 cut(s) 209, 1277, 1435
PagI TCATGA 2 cut(s) 333, 1158
PciI ACATGT 2 cut(s) 1273, 1431
PciSI GCTCTTC 1 cut(s) 1300
PfeI GAWTC 6 cut(s) 130, 149, 261, 501, 671, 907
PinAI ACCGGT 1 cut(s) 185
PkrI GCNGC 4 cut(s) 274, 397, 400, 1048
PleI GAGTC 1 cut(s) 910
PpsI GAGTC 1 cut(s) 910
PscI ACATGT 2 cut(s) 1273, 1431
PspFI CCCAGC 1 cut(s) 1049
PspN4I GGNNCC 2 cut(s) 1098, 1121
PspPI GGNCC 1 cut(s) 1097
PstNI CAGNNNCTG 2 cut(s) 95, 362
PsuI RGATCY 3 cut(s) 590, 895, 1119
PvuII CAGCTG 2 cut(s) 398, 1049
RsaI GTAC 5 cut(s) 250, 413, 580, 724, 1415
RsaNI GTAC 5 cut(s) 249, 412, 579, 723, 1414
RseI CAYNNNNRTG 3 cut(s) 186, 332, 1181
SapI GCTCTTC 1 cut(s) 1300
SaqAI TTAA 2 cut(s) 945, 1392
SatI GCNGC 4 cut(s) 273, 396, 399, 1047
Sau3AI GATC 9 cut(s) 14, 346, 381, 463, 590, 895, 983, 1119, 1317
Sau96I GGNCC 1 cut(s) 1097
ScaI AGTACT 1 cut(s) 1415
SchI GAGTC 1 cut(s) 910
SduI GDGCHC 3 cut(s) 1357, 1431, 1439
SfaNI GCATC 5 cut(s) 89, 439, 696, 983, 1319
SinI GGWCC 1 cut(s) 1097
SmiMI CAYNNNNRTG 3 cut(s) 186, 332, 1181
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
SspI AATATT 1 cut(s) 1344
SspMI CTAG 5 cut(s) 123, 588, 717, 893, 1055
StyI CCWWGG 2 cut(s) 265, 955
TaaI ACNGT 4 cut(s) 406, 820, 951, 1252
TaiI ACGT 1 cut(s) 699
TaqI TCGA 1 cut(s) 371
TatI WGTACW 2 cut(s) 411, 1413
TfiI GAWTC 6 cut(s) 130, 149, 261, 501, 671, 907
Tru1I TTAA 2 cut(s) 945, 1392
Tru9I TTAA 2 cut(s) 945, 1392
TscAI CASTG 2 cut(s) 391, 409
TseFI GTSAC 2 cut(s) 888, 913
TseI GCWGC 4 cut(s) 272, 395, 398, 1046
Tsp45I GTSAC 2 cut(s) 888, 913
TspDTI ATGAA 3 cut(s) 921, 1161, 1315
TspRI CASTG 2 cut(s) 391, 409
VneI GTGCAC 2 cut(s) 1353, 1435
VpaK11BI GGWCC 1 cut(s) 1097
XapI RAATTY 2 cut(s) 99, 643
XceI RCATGY 3 cut(s) 209, 1277, 1435
XcmI CCANNNNNNNNNTGG 1 cut(s) 1183
XspI CTAG 5 cut(s) 123, 588, 717, 893, 1055
ZrmI AGTACT 1 cut(s) 1415
Zsp2I ATGCAT 1 cut(s) 380
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.