RchiOBHm_Chr2g0139111

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0000447
Physical Location & Seq
Reverse (-)
56743789 .. 56745425
1637 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ50969

Sequence Viewer

Length: 780 bp
ATGGGGAAGGTACAGAAGATGTTGAAGCCAAATGTACTCCTGGAGCCTGGAGGTCCAAGTAATGACGCTTTAACAGAGGCAAAGAAAGCTAAACGAGTGGAGGTTTCTATTCTCGATAATGTTTGCTGGAAGGAACTTGGAGTTATAGTGGTTGTCTGGCTCATGATACTTGCATTACAAATTGCTAAGAATTATCTGAGAAAATGTTCAATGACATATTGGTCGACAGAACTCTTACAGATTCCGGTGGCTGTGGGAGTAACTTCATATCAGGCAATGAATCTCTACAGAGGGCGTAGTGTGATTGCATCGAAGGGGGAAGCAAACATGAAATGGTCACTGTACAAGCTAGTTGCCTATTGTGCATGTGGAATAGCAGCTGGTATGCTTGGTGGATTACTTGGTCTTGGTGGGGAGCATTTCTTGGGTCCGATATTTTTGGAGATGGGAATCCCTCCTCAGGTGAGTGCTACGGCCACCTTTGCTATGACATTTTCTTCATCCATGTCTATAGTAGAATACTATCTCCTTAAACGCTTCCCAATTCCTTATGCTCTCTACTTCGCTGCTGTGACTACTGTTTCTGCATTTGCGGGACAACATGTGGCCGGAAAGGTGGTTAAGAAATTAGGAAGAGCTTCTTTGATTATCTTTATCCTGGCGTTCACAGTTTTTTTGAGTTCACTAACACTAGGTGGGATCGGCATAGAAAACATGATTAGGAAGATTCAACACAAGGAGTCCTTGGGATTCCAGAACATCTGCACTTATAAAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

259

Amino Acids

28.28

Weight (kDa)

9.56

Isoelectric Point (pI)

34.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 111 - 224 1.8e-09 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 771
AasI GACNNNNNNGTC 1 cut(s) 220
AccI GTMKAC 1 cut(s) 224
AciI CCGC 1 cut(s) 593
AclWI GGATC 1 cut(s) 707
AcoI YGGCCR 2 cut(s) 474, 606
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 3 cut(s) 12, 36, 344
AfiI CCNNNNNNNGG 1 cut(s) 460
AflIII ACRYGT 1 cut(s) 601
AgsI TTSAA 3 cut(s) 25, 210, 731
AjnI CCWGG 3 cut(s) 39, 46, 657
AluBI AGCT 4 cut(s) 89, 349, 380, 638
AluI AGCT 4 cut(s) 89, 349, 380, 638
AlwI GGATC 1 cut(s) 707
AoxI GGCC 2 cut(s) 474, 606
ApeKI GCWGC 2 cut(s) 377, 566
Asp700I GAANNNNTTC 2 cut(s) 205, 637
AspS9I GGNCC 2 cut(s) 53, 428
AsuHPI GGTGA 1 cut(s) 475
AvaII GGWCC 2 cut(s) 53, 428
AxyI CCTNAGG 1 cut(s) 459
BbvI GCAGC 2 cut(s) 389, 553
BccI CCATC 1 cut(s) 439
BceAI ACGGC 1 cut(s) 489
BciT130I CCWGG 3 cut(s) 41, 48, 659
BfaI CTAG 3 cut(s) 350, 692, 778
BfmI CTRYAG 2 cut(s) 286, 510
BisI GCNGC 2 cut(s) 378, 567
BlsI GCNGC 2 cut(s) 379, 568
Bme1390I CCNGG 3 cut(s) 41, 48, 659
Bme18I GGWCC 2 cut(s) 53, 428
BmgT120I GGNCC 2 cut(s) 53, 428
BmiI GGNNCC 2 cut(s) 45, 429
BmrFI CCNGG 3 cut(s) 41, 48, 659
BmsI GCATC 1 cut(s) 317
BpmI CTGGAG 2 cut(s) 62, 69
BsaBI GATNNNNATC 1 cut(s) 449
BsaJI CCNNGG 1 cut(s) 744
BsaWI WCCGGW 1 cut(s) 244
BsaXI ACNNNNNCTCC 2 cut(s) 132, 162
Bsc4I CCNNNNNNNGG 1 cut(s) 460
Bse21I CCTNAGG 1 cut(s) 459
Bse3DI GCAATG 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 449
BseBI CCWGG 3 cut(s) 41, 48, 659
BseDI CCNNGG 1 cut(s) 744
BseGI GGATG 1 cut(s) 500
BseJI GATNNNNATC 1 cut(s) 449
BseLI CCNNNNNNNGG 1 cut(s) 460
BseMI GCAATG 1 cut(s) 282
BseMII CTCAG 2 cut(s) 188, 473
BseRI GAGGAG 1 cut(s) 447
BseXI GCAGC 2 cut(s) 389, 553
BsgI GTGCAG 1 cut(s) 748
BshFI GGCC 2 cut(s) 476, 608
BsiSI CCGG 2 cut(s) 245, 609
BslFI GGGAC 1 cut(s) 609
BslI CCNNNNNNNGG 1 cut(s) 460
BsmFI GGGAC 1 cut(s) 609
BsnI GGCC 2 cut(s) 476, 608
Bsp1407I TGTACA 1 cut(s) 342
Bsp143I GATC 1 cut(s) 699
BspACI CCGC 1 cut(s) 593
BspANI GGCC 2 cut(s) 476, 608
BspCNI CTCAG 2 cut(s) 189, 472
BspHI TCATGA 1 cut(s) 162
BspLI GGNNCC 2 cut(s) 45, 429
BspPI GGATC 1 cut(s) 707
BspQI GCTCTTC 1 cut(s) 628
BsrDI GCAATG 1 cut(s) 282
BsrGI TGTACA 1 cut(s) 342
BssECI CCNNGG 1 cut(s) 744
BssMI GATC 1 cut(s) 699
BssT1I CCWWGG 1 cut(s) 744
Bst2UI CCWGG 3 cut(s) 41, 48, 659
Bst4CI ACNGT 3 cut(s) 342, 580, 670
Bst6I CTCTTC 1 cut(s) 628
BstAUI TGTACA 1 cut(s) 342
BstDEI CTNAG 3 cut(s) 186, 197, 459
BstF5I GGATG 1 cut(s) 500
BstKTI GATC 1 cut(s) 702
BstMBI GATC 1 cut(s) 699
BstMWI GCNNNNNNNGC 3 cut(s) 86, 362, 482
BstNI CCWGG 3 cut(s) 41, 48, 659
BstNSI RCATGY 2 cut(s) 369, 605
BstSCI CCNGG 3 cut(s) 39, 46, 657
BstSFI CTRYAG 2 cut(s) 286, 510
BstV1I GCAGC 2 cut(s) 389, 553
Bsu36I CCTNAGG 1 cut(s) 459
BsuRI GGCC 2 cut(s) 476, 608
BtsCI GGATG 1 cut(s) 500
BtsIMutI CAGTG 1 cut(s) 338
CciI TCATGA 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 53, 428
CseI GACGC 1 cut(s) 74
Csp6I GTAC 3 cut(s) 11, 35, 343
CviAII CATG 6 cut(s) 163, 328, 366, 505, 602, 715
CviQI GTAC 3 cut(s) 11, 35, 343
DdeI CTNAG 3 cut(s) 186, 197, 459
DpnI GATC 1 cut(s) 701
DpnII GATC 1 cut(s) 699
DraIII CACNNNGTG 1 cut(s) 695
DrdI GACNNNNNNGTC 1 cut(s) 220
DseDI GACNNNNNNGTC 1 cut(s) 220
EaeI YGGCCR 2 cut(s) 474, 606
Eam1104I CTCTTC 1 cut(s) 628
EarI CTCTTC 1 cut(s) 628
Eco130I CCWWGG 1 cut(s) 744
Eco47I GGWCC 2 cut(s) 53, 428
Eco81I CCTNAGG 1 cut(s) 459
EcoRII CCWGG 3 cut(s) 39, 46, 657
EcoT14I CCWWGG 1 cut(s) 744
ErhI CCWWGG 1 cut(s) 744
FaeI CATG 6 cut(s) 166, 331, 369, 508, 605, 718
FalI AAGNNNNNCTT 4 cut(s) 625, 657, 728, 760
FaqI GGGAC 1 cut(s) 609
FatI CATG 6 cut(s) 162, 327, 365, 504, 601, 714
FauI CCCGC 1 cut(s) 586
FblI GTMKAC 1 cut(s) 224
Fnu4HI GCNGC 2 cut(s) 378, 567
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 2 cut(s) 378, 567
FspBI CTAG 3 cut(s) 350, 692, 778
GluI GCNGC 2 cut(s) 378, 567
GsuI CTGGAG 2 cut(s) 62, 69
HaeIII GGCC 2 cut(s) 476, 608
HapII CCGG 2 cut(s) 245, 609
HgaI GACGC 1 cut(s) 74
Hin1II CATG 6 cut(s) 166, 331, 369, 508, 605, 718
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 6 cut(s) 241, 280, 450, 727, 740, 750
HpaII CCGG 2 cut(s) 245, 609
HphI GGTGA 1 cut(s) 475
Hpy166II GTNNAC 3 cut(s) 225, 666, 683
Hpy188I TCNGA 2 cut(s) 198, 432
Hpy188III TCNNGA 3 cut(s) 113, 163, 754
Hpy8I GTNNAC 3 cut(s) 225, 666, 683
HpyAV CCTTC 2 cut(s) 124, 307
HpyCH4III ACNGT 3 cut(s) 342, 580, 670
HpyCH4V TGCA 5 cut(s) 173, 308, 365, 587, 765
HpyF10VI GCNNNNNNNGC 3 cut(s) 86, 362, 482
HpyF3I CTNAG 3 cut(s) 186, 197, 459
Hsp92II CATG 6 cut(s) 166, 331, 369, 508, 605, 718
Kzo9I GATC 1 cut(s) 699
LguI GCTCTTC 1 cut(s) 628
LmnI GCTCC 2 cut(s) 43, 415
Lsp1109I GCAGC 2 cut(s) 389, 553
LweI GCATC 1 cut(s) 317
MaeI CTAG 3 cut(s) 350, 692, 778
MaeIII GTNAC 3 cut(s) 259, 336, 571
MalI GATC 1 cut(s) 701
MboI GATC 1 cut(s) 699
MboII GAAGA 4 cut(s) 28, 489, 645, 736
MluCI AATT 4 cut(s) 180, 190, 543, 626
MlyI GAGTC 1 cut(s) 749
MnlI CCTC 6 cut(s) 44, 70, 94, 284, 465, 468
MroXI GAANNNNTTC 2 cut(s) 205, 637
MseI TTAA 3 cut(s) 71, 531, 621
MspA1I CMGCKG 1 cut(s) 380
MspI CCGG 2 cut(s) 245, 609
MspR9I CCNGG 3 cut(s) 41, 48, 659
MvaI CCWGG 3 cut(s) 41, 48, 659
MwoI GCNNNNNNNGC 3 cut(s) 86, 362, 482
NdeII GATC 1 cut(s) 699
NlaIII CATG 6 cut(s) 166, 331, 369, 508, 605, 718
NlaIV GGNNCC 2 cut(s) 45, 429
NmuCI GTSAC 2 cut(s) 336, 571
NspI RCATGY 2 cut(s) 369, 605
PagI TCATGA 1 cut(s) 162
PciI ACATGT 1 cut(s) 601
PciSI GCTCTTC 1 cut(s) 628
PdmI GAANNNNTTC 2 cut(s) 205, 637
PfeI GAWTC 5 cut(s) 241, 280, 450, 727, 750
PfoI TCCNGGA 1 cut(s) 39
PkrI GCNGC 2 cut(s) 379, 568
PleI GAGTC 1 cut(s) 748
PpsI GAGTC 1 cut(s) 748
PscI ACATGT 1 cut(s) 601
PsiI TTATAA 1 cut(s) 771
Psp6I CCWGG 3 cut(s) 39, 46, 657
PspGI CCWGG 3 cut(s) 39, 46, 657
PspN4I GGNNCC 2 cut(s) 45, 429
PspPI GGNCC 2 cut(s) 53, 428
PvuII CAGCTG 1 cut(s) 380
RsaI GTAC 3 cut(s) 12, 36, 344
RsaNI GTAC 3 cut(s) 11, 35, 343
SalI GTCGAC 1 cut(s) 223
SapI GCTCTTC 1 cut(s) 628
SaqAI TTAA 3 cut(s) 71, 531, 621
SatI GCNGC 2 cut(s) 378, 567
Sau3AI GATC 1 cut(s) 699
Sau96I GGNCC 2 cut(s) 53, 428
SchI GAGTC 1 cut(s) 749
ScrFI CCNGG 3 cut(s) 41, 48, 659
SfaNI GCATC 1 cut(s) 317
SfcI CTRYAG 2 cut(s) 286, 510
SinI GGWCC 2 cut(s) 53, 428
Sse9I AATT 4 cut(s) 180, 190, 543, 626
SsiI CCGC 1 cut(s) 593
SspMI CTAG 3 cut(s) 350, 692, 778
StyD4I CCNGG 3 cut(s) 39, 46, 657
StyI CCWWGG 1 cut(s) 744
TaaI ACNGT 3 cut(s) 342, 580, 670
TaqI TCGA 3 cut(s) 114, 224, 311
TasI AATT 4 cut(s) 180, 190, 543, 626
TatI WGTACW 2 cut(s) 34, 342
TfiI GAWTC 5 cut(s) 241, 280, 450, 727, 750
Tru1I TTAA 3 cut(s) 71, 531, 621
Tru9I TTAA 3 cut(s) 71, 531, 621
TscAI CASTG 1 cut(s) 345
TseFI GTSAC 2 cut(s) 336, 571
TseI GCWGC 2 cut(s) 377, 566
Tsp45I GTSAC 2 cut(s) 336, 571
TspDTI ATGAA 4 cut(s) 255, 293, 344, 489
TspRI CASTG 1 cut(s) 345
VpaK11BI GGWCC 2 cut(s) 53, 428
XceI RCATGY 2 cut(s) 369, 605
XmiI GTMKAC 1 cut(s) 224
XmnI GAANNNNTTC 2 cut(s) 205, 637
XspI CTAG 3 cut(s) 350, 692, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.