Rh2AG404900

Sulfite exporter TauE/SafE

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0000447
Physical Location & Seq
Reverse (-)
60368469 .. 60369103
635 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG404900.1

Sequence Viewer

Length: 495 bp
ATGGACATAGTAATTACTTCGTGCCTGGAAATATGTAGTTCAGAAATTAACTTTGTTAGGGATGTCATGCTGCAGAAAATAAGATTTGATTGGAAAATTGTGGTGGGCACGACAATTGCTTTCCTCGGGGCAGCATTTGGGAGTGTTGGAGGTGTTGGTGGGGGTGGCTTTTTCATTCCAATGCTCACCCTCATCATTGGTTTTGATCAGAAATCATCAATCGCAGTATCCAAATGTATGATCACAGGTACATCAACTGCTACTGTGTTATACAACTTACGGCAAAGGCATCCCACACTTGAGCTTCCCATTATTGACTATGATTTGGCGCTTCTCTTCCAACCATTACTGGTGCTGGGGATCAGCATTGGGGTTTCTTTGAATGTGGTTCTTTCTGATTGGATGATCACCATCCTACTATTTGTGGTCCTCTTAGGTAATAGTAATTTTTTATCTAATATTTCAATCTTCTCTCTTCCCAAATATCGGCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TauE

Protein Analysis

164

Amino Acids

17.89

Weight (kDa)

6.53

Isoelectric Point (pI)

32.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TauE PF01925 38 - 145 2.8e-10 Sulfite exporter TauE/SafE
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000447)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G25737 AT2G25737
fragaria_vesca FvH4_2g36080 FvH4_2g36080 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31610 FvH4_6g31650 FvH4_6g31650 FvH4_6g31650 FvH4_6g31850 FvH4_6g31850
malus_domestica MD08G1118000.v1.1 MD09G1210100.v1.1 MD09G1210300.v1.1 MD15G1097500.v1.1 MD17G1190800.v1.1 MD17G1192400.v1.1
prunus_persica Prupe.1G452300_v2.0.a1 Prupe.1G452300_v2.0.a1 Prupe.3G066100_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068200_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068300_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1 Prupe.3G068400_v2.0.a1
pyrus_communis pycom08g09860 pycom09g12740 pycom09g12770 pycom15g08940 pycom17g19800 pycom17g19910
rosa_chinensis RchiOBHm_Chr2g0138671 RchiOBHm_Chr2g0138691 RchiOBHm_Chr2g0139111 RchiOBHm_Chr2g0139121 RchiOBHm_Chr2g0139161 RchiOBHm_Chr6g0305781 RchiOBHm_Chr7g0240101
rosa_laevigata RLG00000010859 RLG00000019753 RLG00000019756 RLG00000019792
rosa_multiflora Rmu_sc0001803.1_g000021 Rmu_sc0001803.1_g000022 Rmu_sc0001803.1_g000024 Rmu_sc0006243.1_g000011 Rmu_sc0007053.1_g000009 Rmu_sc0033335.1_g000001 Rmu_ssc0000210.1_g000006
rosa_roxburghii Rroxscaffold_2G00105610 Rroxscaffold_2G00106000 Rroxscaffold_2G00106020 Rroxscaffold_7G00162350
rosa_rugosa Rorug02G0352100 Rorug02G0352300 Rorug02G0352400 Rorug02G0354900 Rorug02G0355200 Rorug06G0344000
rosa_samantha Rh2AG401900 Rh2AG404900 Rh2AG405300 Rh2BG405700 Rh2BG405900 Rh2BG415400 Rh2BG415700 Rh2CG387900 Rh2CG388100 Rh2CG391200 Rh2CG391400 Rh2DG421800 Rh2DG422000 Rh2DG424700 Rh2DG424800 Rh2DG425100 Rh6AG455500 Rh6BG445600 Rh6CG469500 Rh6DG456200 Rh7DG471900
rosa_wichuraiana Rw2G032650 Rw2G032670 Rw2G033100 Rw6G039740

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 368
AcoI YGGCCR 1 cut(s) 488
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 1 cut(s) 486
AgsI TTSAA 2 cut(s) 382, 465
AjnI CCWGG 1 cut(s) 24
AluBI AGCT 1 cut(s) 304
AluI AGCT 1 cut(s) 304
AlwI GGATC 1 cut(s) 368
Ama87I CYCGRG 1 cut(s) 125
AoxI GGCC 1 cut(s) 488
ApeKI GCWGC 2 cut(s) 70, 131
AspLEI GCGC 1 cut(s) 331
AspS9I GGNCC 1 cut(s) 427
AsuHPI GGTGA 2 cut(s) 178, 400
AvaI CYCGRG 1 cut(s) 125
AvaII GGWCC 1 cut(s) 427
BaeGI GKGCMC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 57, 143
BccI CCATC 1 cut(s) 419
BceAI ACGGC 1 cut(s) 296
BciT130I CCWGG 1 cut(s) 26
BciVI GTATCC 1 cut(s) 238
BclI TGATCA 3 cut(s) 205, 240, 405
BfmI CTRYAG 1 cut(s) 71
BfoI RGCGCY 1 cut(s) 332
BfuI GTATCC 1 cut(s) 238
BisI GCNGC 2 cut(s) 71, 132
BlsI GCNGC 2 cut(s) 72, 133
Bme1390I CCNGG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 427
BmeT110I CYCGRG 1 cut(s) 125
BmgT120I GGNCC 1 cut(s) 427
BmrFI CCNGG 1 cut(s) 26
BmsI GCATC 1 cut(s) 298
BpuEI CTTGAG 1 cut(s) 320
BsaBI GATNNNNATC 1 cut(s) 410
BsaJI CCNNGG 1 cut(s) 124
Bsc4I CCNNNNNNNGG 1 cut(s) 486
Bse1I ACTGG 1 cut(s) 354
Bse8I GATNNNNATC 1 cut(s) 410
BseBI CCWGG 1 cut(s) 26
BseDI CCNNGG 1 cut(s) 124
BseGI GGATG 4 cut(s) 67, 289, 408, 411
BseJI GATNNNNATC 1 cut(s) 410
BseLI CCNNNNNNNGG 1 cut(s) 486
BseNI ACTGG 1 cut(s) 354
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 2 cut(s) 57, 143
BseYI CCCAGC 1 cut(s) 355
BshFI GGCC 1 cut(s) 490
BsiHKCI CYCGRG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 486
BsnI GGCC 1 cut(s) 490
BsoBI CYCGRG 1 cut(s) 125
Bsp1286I GDGCHC 1 cut(s) 110
Bsp143I GATC 4 cut(s) 205, 240, 360, 405
BspANI GGCC 1 cut(s) 490
BspMAI CTGCAG 1 cut(s) 75
BspPI GGATC 1 cut(s) 368
BsrI ACTGG 1 cut(s) 354
BssECI CCNNGG 1 cut(s) 124
BssMI GATC 4 cut(s) 205, 240, 360, 405
Bst2UI CCWGG 1 cut(s) 26
Bst4CI ACNGT 1 cut(s) 265
Bst6I CTCTTC 2 cut(s) 341, 480
BstDEI CTNAG 1 cut(s) 433
BstF5I GGATG 4 cut(s) 67, 289, 408, 411
BstH2I RGCGCY 1 cut(s) 332
BstHHI GCGC 1 cut(s) 331
BstKTI GATC 4 cut(s) 208, 243, 363, 408
BstMBI GATC 4 cut(s) 205, 240, 360, 405
BstNI CCWGG 1 cut(s) 26
BstSCI CCNGG 1 cut(s) 24
BstSFI CTRYAG 1 cut(s) 71
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 57, 143
BsuI GTATCC 1 cut(s) 238
BsuRI GGCC 1 cut(s) 490
BtsCI GGATG 4 cut(s) 67, 289, 408, 411
CfoI GCGC 1 cut(s) 331
Cfr13I GGNCC 1 cut(s) 427
Csp6I GTAC 1 cut(s) 249
CviAII CATG 2 cut(s) 67, 492
CviJI RGCY 3 cut(s) 168, 304, 490
CviKI_1 RGCY 3 cut(s) 168, 304, 490
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 433
DpnI GATC 4 cut(s) 207, 242, 362, 407
DpnII GATC 4 cut(s) 205, 240, 360, 405
EaeI YGGCCR 1 cut(s) 488
Eam1104I CTCTTC 2 cut(s) 341, 480
EarI CTCTTC 2 cut(s) 341, 480
Eco47I GGWCC 1 cut(s) 427
Eco88I CYCGRG 1 cut(s) 125
EcoRII CCWGG 1 cut(s) 24
FaeI CATG 2 cut(s) 70, 495
FaiI YATR 7 cut(s) 8, 34, 68, 239, 271, 321, 493
FatI CATG 2 cut(s) 66, 491
FbaI TGATCA 3 cut(s) 205, 240, 405
Fnu4HI GCNGC 2 cut(s) 71, 132
FokI GGATG 4 cut(s) 74, 276, 398, 415
Fsp4HI GCNGC 2 cut(s) 71, 132
GlaI GCGC 1 cut(s) 330
GluI GCNGC 2 cut(s) 71, 132
GsaI CCCAGC 1 cut(s) 359
HaeII RGCGCY 1 cut(s) 332
HaeIII GGCC 1 cut(s) 490
HhaI GCGC 1 cut(s) 331
Hin1II CATG 2 cut(s) 70, 495
Hin6I GCGC 1 cut(s) 329
HinP1I GCGC 1 cut(s) 329
HphI GGTGA 2 cut(s) 178, 400
Hpy188I TCNGA 3 cut(s) 43, 210, 397
HpyCH4III ACNGT 1 cut(s) 265
HpyCH4V TGCA 1 cut(s) 73
HpyF3I CTNAG 1 cut(s) 433
Hsp92II CATG 2 cut(s) 70, 495
HspAI GCGC 1 cut(s) 329
Ksp22I TGATCA 3 cut(s) 205, 240, 405
Kzo9I GATC 4 cut(s) 205, 240, 360, 405
LpnPI CCDG 5 cut(s) 11, 38, 231, 335, 341
Lsp1109I GCAGC 2 cut(s) 57, 143
LweI GCATC 1 cut(s) 298
MalI GATC 4 cut(s) 207, 242, 362, 407
MboI GATC 4 cut(s) 205, 240, 360, 405
MboII GAAGA 3 cut(s) 328, 460, 467
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 110
MluCI AATT 5 cut(s) 12, 45, 96, 114, 445
MmeI TCCRAC 2 cut(s) 127, 364
MnlI CCTC 4 cut(s) 134, 143, 200, 440
MseI TTAA 1 cut(s) 48
MslI CAYNNNNRTG 1 cut(s) 179
MspR9I CCNGG 1 cut(s) 26
MunI CAATTG 1 cut(s) 114
MvaI CCWGG 1 cut(s) 26
NdeII GATC 4 cut(s) 205, 240, 360, 405
NlaIII CATG 2 cut(s) 70, 495
PkrI GCNGC 2 cut(s) 72, 133
Psp6I CCWGG 1 cut(s) 24
PspFI CCCAGC 1 cut(s) 355
PspGI CCWGG 1 cut(s) 24
PspPI GGNCC 1 cut(s) 427
PstI CTGCAG 1 cut(s) 75
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 179
SaqAI TTAA 1 cut(s) 48
SatI GCNGC 2 cut(s) 71, 132
Sau3AI GATC 4 cut(s) 205, 240, 360, 405
Sau96I GGNCC 1 cut(s) 427
ScrFI CCNGG 1 cut(s) 26
SduI GDGCHC 1 cut(s) 110
SetI ASST 4 cut(s) 154, 250, 306, 439
SfaNI GCATC 1 cut(s) 298
SfcI CTRYAG 1 cut(s) 71
SinI GGWCC 1 cut(s) 427
SmiMI CAYNNNNRTG 1 cut(s) 179
SmlI CTYRAG 1 cut(s) 299
SmoI CTYRAG 1 cut(s) 299
Sse9I AATT 5 cut(s) 12, 45, 96, 114, 445
SspI AATATT 1 cut(s) 460
StyD4I CCNGG 1 cut(s) 24
TaaI ACNGT 1 cut(s) 265
TasI AATT 5 cut(s) 12, 45, 96, 114, 445
Tru1I TTAA 1 cut(s) 48
Tru9I TTAA 1 cut(s) 48
TseI GCWGC 2 cut(s) 70, 131
TspDTI ATGAA 1 cut(s) 163
VpaK11BI GGWCC 1 cut(s) 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.