Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0013855

Physical Location & Seq

Genomic Coordinates Reverse (-)

7160115 .. 7161932

Gene Structure 1818 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGTCGGGTAAAGGAGCAAAGGGTTTGATAATGGGGAAAGGCCCCGCAGCAATCAACAAGGATAAAGACAAGGACAAGAAGAAACCCATCTCTCGTTCCTCTCGTGCTGGCCTTCAGTTCCCTGTTGGTCGAATTCACCGTCTCTTGAAGACAAGGGTTCAAGCGAATGGAAGAGTTGGTGCAACAGCTGCTGTGTACTCTGCCGCTATCTTGGAATATCTAACCGCAGAAGTCTTGGAGCTGGCAGGCAATGCAAGCAAAGATTTAAAGGTGAAGCGTATTACACCCAGGCACTTGCAGCTTGCAATTCGGGGTGATGAAGAACTCGACACCCTGATCAAGGGTACAATAGCCGGTGGTGGCGTGATCCCTCACATTCACAAATCTCTCATCAACAAGTCCACCAAGGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

138

Amino Acids

14.63

Weight (kDa)

10.32

Isoelectric Point (pI)

31.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	20 - 105	2.5e-19	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	107 - 136	6.9e-11	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0013855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54560 AT3G54560
prunus_persica	Prupe.1G472200_v2.0.a1 Prupe.1G472200_v2.0.a1
pyrus_communis	pycom15g10710
rosa_chinensis	RchiOBHm_Chr6g0298761
rosa_laevigata	RLG00000011488
rosa_multiflora	Rmu_ssc0000397.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169360
rosa_rugosa	Rorug06G0282800 Rorug06G0282800 Rorug06G0282800
rosa_samantha	Rh6AG394200 Rh6BG402000 Rh6CG407900 Rh6DG394500
rosa_wichuraiana	Rw6G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	45, 204, 225
AclWI	GGATC	1 cut(s)	361
AcsI	RAATTY	1 cut(s)	132
AcuI	CTGAAG	1 cut(s)	98
AfaI	GTAC	2 cut(s)	197, 346
AfiI	CCNNNNNNNGG	1 cut(s)	340
AgsI	TTSAA	2 cut(s)	148, 161
AjnI	CCWGG	1 cut(s)	287
AluBI	AGCT	3 cut(s)	188, 241, 301
AluI	AGCT	3 cut(s)	188, 241, 301
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	361
AlwNI	CAGNNNCTG	1 cut(s)	191
AoxI	GGCC	2 cut(s)	40, 109
ApeKI	GCWGC	3 cut(s)	47, 188, 298
ApoI	RAATTY	1 cut(s)	132
ArsI	GACNNNNNNTTYG	2 cut(s)	124, 156
AspS9I	GGNCC	1 cut(s)	41
AsuHPI	GGTGA	3 cut(s)	128, 283, 326
BauI	CACGAG	1 cut(s)	102
BbsI	GAAGAC	1 cut(s)	155
BbvI	GCAGC	3 cut(s)	59, 175, 310
BccI	CCATC	1 cut(s)	95
BciT130I	CCWGG	1 cut(s)	289
BclI	TGATCA	1 cut(s)	336
BcoDI	GTCTC	1 cut(s)	146
BfaI	CTAG	1 cut(s)	412
BisI	GCNGC	4 cut(s)	48, 189, 204, 299
BlsI	GCNGC	4 cut(s)	49, 190, 205, 300
Bme1390I	CCNGG	1 cut(s)	289
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	43
BmrFI	CCNGG	1 cut(s)	289
BpiI	GAAGAC	1 cut(s)	155
BsaJI	CCNNGG	2 cut(s)	287, 405
Bsc4I	CCNNNNNNNGG	1 cut(s)	340
Bse118I	RCCGGY	1 cut(s)	353
Bse3DI	GCAATG	1 cut(s)	256
BseBI	CCWGG	1 cut(s)	289
BseDI	CCNNGG	2 cut(s)	287, 405
BseLI	CCNNNNNNNGG	1 cut(s)	340
BseMI	GCAATG	1 cut(s)	256
BseXI	GCAGC	3 cut(s)	59, 175, 310
BshFI	GGCC	2 cut(s)	42, 111
BsiSI	CCGG	1 cut(s)	354
BslI	CCNNNNNNNGG	1 cut(s)	340
BsmAI	GTCTC	1 cut(s)	146
BsmBI	CGTCTC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	42, 111
Bsp143I	GATC	2 cut(s)	336, 366
BspACI	CCGC	3 cut(s)	45, 204, 225
BspANI	GGCC	2 cut(s)	42, 111
BspLI	GGNNCC	1 cut(s)	43
BspPI	GGATC	1 cut(s)	361
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	1 cut(s)	353
BssAI	RCCGGY	1 cut(s)	353
BssECI	CCNNGG	2 cut(s)	287, 405
BssMI	GATC	2 cut(s)	336, 366
BssSI	CACGAG	1 cut(s)	102
BssT1I	CCWWGG	1 cut(s)	405
Bst2BI	CACGAG	1 cut(s)	102
Bst2UI	CCWGG	1 cut(s)	289
Bst4CI	ACNGT	1 cut(s)	140
Bst6I	CTCTTC	1 cut(s)	166
BstAPI	GCANNNNNTGC	2 cut(s)	188, 251
BstC8I	GCNNGC	5 cut(s)	109, 243, 247, 256, 303
BstENI	CCTNNNNNAGG	1 cut(s)	338
BstKTI	GATC	2 cut(s)	339, 369
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	2 cut(s)	336, 366
BstMWI	GCNNNNNNNGC	4 cut(s)	188, 251, 255, 298
BstNI	CCWGG	1 cut(s)	289
BstSCI	CCNGG	1 cut(s)	287
BstV1I	GCAGC	3 cut(s)	59, 175, 310
BstV2I	GAAGAC	1 cut(s)	155
BsuRI	GGCC	2 cut(s)	42, 111
Cac8I	GCNNGC	5 cut(s)	109, 243, 247, 256, 303
CaiI	CAGNNNCTG	1 cut(s)	191
Cfr10I	RCCGGY	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	196, 345
CviJI	RGCY	6 cut(s)	42, 111, 188, 241, 301, 353
CviKI_1	RGCY	6 cut(s)	42, 111, 188, 241, 301, 353
CviQI	GTAC	2 cut(s)	196, 345
DpnI	GATC	2 cut(s)	338, 368
DpnII	GATC	2 cut(s)	336, 366
DraI	TTTAAA	1 cut(s)	267
Eam1104I	CTCTTC	1 cut(s)	166
EarI	CTCTTC	1 cut(s)	166
Eco130I	CCWWGG	1 cut(s)	405
Eco57I	CTGAAG	1 cut(s)	98
EcoNI	CCTNNNNNAGG	1 cut(s)	338
EcoO109I	RGGNCCY	1 cut(s)	41
EcoRI	GAATTC	1 cut(s)	132
EcoRII	CCWGG	1 cut(s)	287
EcoT14I	CCWWGG	1 cut(s)	405
ErhI	CCWWGG	1 cut(s)	405
Esp3I	CGTCTC	1 cut(s)	146
FauI	CCCGC	1 cut(s)	52
FbaI	TGATCA	1 cut(s)	336
Fnu4HI	GCNGC	4 cut(s)	48, 189, 204, 299
Fsp4HI	GCNGC	4 cut(s)	48, 189, 204, 299
FspBI	CTAG	1 cut(s)	412
GluI	GCNGC	4 cut(s)	48, 189, 204, 299
HaeIII	GGCC	2 cut(s)	42, 111
HapII	CCGG	1 cut(s)	354
HpaII	CCGG	1 cut(s)	354
HphI	GGTGA	3 cut(s)	128, 283, 326
Hpy166II	GTNNAC	2 cut(s)	196, 402
Hpy188III	TCNNGA	1 cut(s)	145
Hpy8I	GTNNAC	2 cut(s)	196, 402
HpyAV	CCTTC	1 cut(s)	122
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4V	TGCA	4 cut(s)	182, 254, 298, 305
HpyF10VI	GCNNNNNNNGC	4 cut(s)	188, 251, 255, 298
Ksp22I	TGATCA	1 cut(s)	336
Kzo9I	GATC	2 cut(s)	336, 366
LmnI	GCTCC	2 cut(s)	14, 238
LpnPI	CCDG	8 cut(s)	93, 135, 227, 231, 274, 301, 347, 367
Lsp1109I	GCAGC	3 cut(s)	59, 175, 310
MaeI	CTAG	1 cut(s)	412
MalI	GATC	2 cut(s)	338, 368
MboI	GATC	2 cut(s)	336, 366
MboII	GAAGA	4 cut(s)	91, 160, 183, 332
MluCI	AATT	2 cut(s)	132, 306
MnlI	CCTC	2 cut(s)	109, 381
MseI	TTAA	1 cut(s)	266
MspA1I	CMGCKG	1 cut(s)	188
MspI	CCGG	1 cut(s)	354
MspR9I	CCNGG	1 cut(s)	289
MvaI	CCWGG	1 cut(s)	289
MwoI	GCNNNNNNNGC	4 cut(s)	188, 251, 255, 298
NdeII	GATC	2 cut(s)	336, 366
NlaIV	GGNNCC	1 cut(s)	43
PcsI	WCGNNNNNNNCGW	2 cut(s)	100, 136
PkrI	GCNGC	4 cut(s)	49, 190, 205, 300
Psp6I	CCWGG	1 cut(s)	287
PspGI	CCWGG	1 cut(s)	287
PspN4I	GGNNCC	1 cut(s)	43
PspPI	GGNCC	1 cut(s)	41
PstNI	CAGNNNCTG	1 cut(s)	191
PvuII	CAGCTG	1 cut(s)	188
RsaI	GTAC	2 cut(s)	197, 346
RsaNI	GTAC	2 cut(s)	196, 345
SaqAI	TTAA	1 cut(s)	266
SatI	GCNGC	4 cut(s)	48, 189, 204, 299
Sau3AI	GATC	2 cut(s)	336, 366
Sau96I	GGNCC	1 cut(s)	41
ScrFI	CCNGG	1 cut(s)	289
SetI	ASST	4 cut(s)	190, 243, 273, 303
Sse9I	AATT	2 cut(s)	132, 306
SsiI	CCGC	3 cut(s)	45, 204, 225
SspMI	CTAG	1 cut(s)	412
StyD4I	CCNGG	1 cut(s)	287
StyI	CCWWGG	1 cut(s)	405
TaaI	ACNGT	1 cut(s)	140
TaqI	TCGA	2 cut(s)	130, 327
TasI	AATT	2 cut(s)	132, 306
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	206
Tru1I	TTAA	1 cut(s)	266
Tru9I	TTAA	1 cut(s)	266
TseI	GCWGC	3 cut(s)	47, 188, 298
TspDTI	ATGAA	1 cut(s)	333
XagI	CCTNNNNNAGG	1 cut(s)	338
XapI	RAATTY	1 cut(s)	132
XspI	CTAG	1 cut(s)	412

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.