Rorug06G0282800

1-deoxy-D-xylulose-5-phosphate synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0003748
Physical Location & Seq
Reverse (-)
43090762 .. 43095174
4413 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0282800.1

Sequence Viewer

Length: 1104 bp
ATGGAAAGCTACCGGAGAGTCGAGAAGCCGAAGCCGGAGCTCCCAATCAGCGAGAACGAGATCCGAATCACCACCCAGGGCGCCATCAGAAACTACATCAGCTATGCCACCACTCAGCTCCAGGATAAACAAGTCAACGAAATTGTCTTGAAAGCAATGGGACAGGCAATCAGCAAGACAGTGGCTATTGCTGAAATCATAAAGAAGAGGGTTCCAATGTTGCATCAAGATACTGCCATCACCTCTGTAAGCATAACTGATGTATGGGAACCTATTGAGGAGGGTCTTGTACCTGTGGAGATGACTCGCCATGTGTCAATGATTTCAATTACACTATCAACTAAGGAGTTAAACACAACCTCTGCGGGATATCAAGCTCCATCTCCCCTAGACCAATCAAAGCCACAGCCCAATTACCAACAACAGCAACCAAGACAAGCTCGTGGTCCATACAATGCTGTCAATGAAGATTCATATGGTCGAGGACGGGGACGTGGTAGAGGCAGAGGTCGTGGCAGAGGTGGAGGATACGGCAACTATCAAGGTGGATATGGCAACTATCAAGGGGGATATGGAAACTATCAAGGAGGTGGTTATGGAAGCTATCAAGATAATGGTGGGTATCCAAATCGGGGAAGAGGTGGTGGACGAGGCAGAAGTTGGCCCAATCGTGGTTCTGGTGGTTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGAGGTTCAGGACCTTCAGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTTCAGGTGGCTATGAAAGAGGTGCCGGTGGCTATGAAAGAGGTGCCGGTGGTTATGATAGAAATGCTGGATATGAAAGAGGTGCTGGTGGAAATGATAGAGGTGCTGGTGGTTATGATAGAAATGCTGGTTATGAAAGAGGTGCCAGTGGGAATGATAGAGGTGCTGGTGGCTATGAAAGAGGTCCTGGTGGGTATGACAGAGGTACTGGTGGTTATGACAGGGGTACTGGTGGTTATGAAAGAGGCAGAGGTCAAGGGGGCAGAGGATATGGTCGTGGGAGGGGACGGATGGGTGGACGCTCTAGGGGTGGTGCGAACCAGGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00730 ko00900 ko01100 ko01110 ko01130 map00730 map00900 map01100 map01110 map01130
Pfam Domains
Protein Families
DXP_synthase_N Transket_pyr Transketolase_C

Protein Analysis

367

Amino Acids

38.92

Weight (kDa)

9.81

Isoelectric Point (pI)

23.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Alba PF01918 19 - 83 3.6e-16 Alba
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 4 cut(s) 80, 797, 818, 917
AciI CCGC 1 cut(s) 365
AclWI GGATC 1 cut(s) 55
AcuI CTGAAG 2 cut(s) 690, 720
AcyI GRCGYC 1 cut(s) 81
AfaI GTAC 3 cut(s) 291, 982, 1003
AfiI CCNNNNNNNGG 4 cut(s) 632, 671, 710, 740
AgsI TTSAA 2 cut(s) 151, 327
AjiI CACGTC 1 cut(s) 494
AjnI CCWGG 4 cut(s) 75, 120, 961, 1095
AluBI AGCT 7 cut(s) 9, 40, 102, 118, 377, 440, 603
AluI AGCT 7 cut(s) 9, 40, 102, 118, 377, 440, 603
Alw21I GWGCWC 1 cut(s) 42
AlwI GGATC 1 cut(s) 55
AoxI GGCC 1 cut(s) 662
AspLEI GCGC 1 cut(s) 83
AspS9I GGNCC 5 cut(s) 446, 663, 701, 731, 959
AsuHPI GGTGA 2 cut(s) 61, 232
AvaII GGWCC 4 cut(s) 446, 701, 731, 959
BanI GGYRCC 4 cut(s) 80, 797, 818, 917
BanII GRGCYC 1 cut(s) 42
BauI CACGAG 1 cut(s) 441
Bbv12I GWGCWC 1 cut(s) 42
BccI CCATC 4 cut(s) 92, 245, 388, 1060
BceAI ACGGC 1 cut(s) 547
BciT130I CCWGG 4 cut(s) 77, 122, 963, 1097
BciVI GTATCC 2 cut(s) 521, 633
BfaI CTAG 2 cut(s) 389, 1080
BfoI RGCGCY 1 cut(s) 84
BfuI GTATCC 2 cut(s) 521, 633
Bme1390I CCNGG 4 cut(s) 77, 122, 963, 1097
Bme18I GGWCC 4 cut(s) 446, 701, 731, 959
BmgBI CACGTC 1 cut(s) 494
BmgT120I GGNCC 5 cut(s) 446, 663, 701, 731, 959
BmiI GGNNCC 6 cut(s) 82, 213, 270, 799, 820, 919
BmrFI CCNGG 4 cut(s) 77, 122, 963, 1097
BmsI GCATC 1 cut(s) 232
BpmI CTGGAG 1 cut(s) 104
BsaBI GATNNNNATC 1 cut(s) 65
BsaHI GRCGYC 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 75, 76
BsaWI WCCGGW 1 cut(s) 12
Bsc4I CCNNNNNNNGG 4 cut(s) 632, 671, 710, 740
Bse118I RCCGGY 2 cut(s) 800, 821
Bse1I ACTGG 3 cut(s) 921, 988, 1009
Bse3DI GCAATG 1 cut(s) 162
Bse8I GATNNNNATC 1 cut(s) 65
BseBI CCWGG 4 cut(s) 77, 122, 963, 1097
BseDI CCNNGG 2 cut(s) 75, 76
BseGI GGATG 1 cut(s) 1071
BseJI GATNNNNATC 1 cut(s) 65
BseLI CCNNNNNNNGG 4 cut(s) 632, 671, 710, 740
BseMI GCAATG 1 cut(s) 162
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 3 cut(s) 921, 988, 1009
BseRI GAGGAG 1 cut(s) 293
BshFI GGCC 1 cut(s) 664
BshNI GGYRCC 4 cut(s) 80, 797, 818, 917
BsiHKAI GWGCWC 1 cut(s) 42
BsiSI CCGG 4 cut(s) 13, 35, 801, 822
BslFI GGGAC 3 cut(s) 174, 504, 1074
BslI CCNNNNNNNGG 4 cut(s) 632, 671, 710, 740
BsmFI GGGAC 3 cut(s) 174, 504, 1074
BsnI GGCC 1 cut(s) 664
Bsp1286I GDGCHC 1 cut(s) 42
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 365
BspANI GGCC 1 cut(s) 664
BspCNI CTCAG 1 cut(s) 127
BspLI GGNNCC 6 cut(s) 82, 213, 270, 799, 820, 919
BspPI GGATC 1 cut(s) 55
BspT107I GGYRCC 4 cut(s) 80, 797, 818, 917
BsrDI GCAATG 1 cut(s) 162
BsrFI RCCGGY 2 cut(s) 800, 821
BsrI ACTGG 3 cut(s) 921, 988, 1009
BssAI RCCGGY 2 cut(s) 800, 821
BssECI CCNNGG 2 cut(s) 75, 76
BssMI GATC 1 cut(s) 60
BssNI GRCGYC 1 cut(s) 81
BssSI CACGAG 1 cut(s) 441
Bst2BI CACGAG 1 cut(s) 441
Bst2UI CCWGG 4 cut(s) 77, 122, 963, 1097
Bst4CI ACNGT 1 cut(s) 181
Bst6I CTCTTC 2 cut(s) 200, 631
BstACI GRCGYC 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 114, 342
BstF5I GGATG 1 cut(s) 1071
BstH2I RGCGCY 1 cut(s) 84
BstHHI GCGC 1 cut(s) 83
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 1097
BstNI CCWGG 4 cut(s) 77, 122, 963, 1097
BstSCI CCNGG 4 cut(s) 75, 120, 961, 1095
BstX2I RGATCY 1 cut(s) 60
BstYI RGATCY 1 cut(s) 60
BsuI GTATCC 2 cut(s) 521, 633
BsuRI GGCC 1 cut(s) 664
BtrI CACGTC 1 cut(s) 494
BtsCI GGATG 1 cut(s) 1071
BtsIMutI CAGTG 2 cut(s) 186, 928
CfoI GCGC 1 cut(s) 83
Cfr10I RCCGGY 2 cut(s) 800, 821
Cfr13I GGNCC 5 cut(s) 446, 663, 701, 731, 959
CseI GACGC 1 cut(s) 1083
Csp6I GTAC 3 cut(s) 290, 981, 1002
CviAII CATG 1 cut(s) 311
CviQI GTAC 3 cut(s) 290, 981, 1002
DdeI CTNAG 2 cut(s) 114, 342
DinI GGCGCC 1 cut(s) 82
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eam1104I CTCTTC 2 cut(s) 200, 631
EarI CTCTTC 2 cut(s) 200, 631
Ecl136II GAGCTC 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 42
Eco32I GATATC 1 cut(s) 371
Eco47I GGWCC 4 cut(s) 446, 701, 731, 959
Eco53kI GAGCTC 1 cut(s) 40
Eco57I CTGAAG 2 cut(s) 690, 720
EcoICRI GAGCTC 1 cut(s) 40
EcoO109I RGGNCCY 3 cut(s) 701, 731, 959
EcoRII CCWGG 4 cut(s) 75, 120, 961, 1095
EcoRV GATATC 1 cut(s) 371
EcoT38I GRGCYC 1 cut(s) 42
EgeI GGCGCC 1 cut(s) 82
EheI GGCGCC 1 cut(s) 82
FaeI CATG 1 cut(s) 314
FaqI GGGAC 3 cut(s) 174, 504, 1074
FatI CATG 1 cut(s) 310
FauI CCCGC 1 cut(s) 358
FauNDI CATATG 1 cut(s) 475
FokI GGATG 1 cut(s) 1078
FriOI GRGCYC 1 cut(s) 42
FspBI CTAG 2 cut(s) 389, 1080
GlaI GCGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 104
HaeII RGCGCY 1 cut(s) 84
HaeIII GGCC 1 cut(s) 664
HapII CCGG 4 cut(s) 13, 35, 801, 822
HgaI GACGC 1 cut(s) 1083
HhaI GCGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 81
Hin1II CATG 1 cut(s) 314
Hin6I GCGC 1 cut(s) 81
HinP1I GCGC 1 cut(s) 81
HincII GTYRAC 1 cut(s) 136
HindII GTYRAC 1 cut(s) 136
HinfI GANTC 4 cut(s) 18, 66, 304, 470
HpaII CCGG 4 cut(s) 13, 35, 801, 822
HphI GGTGA 2 cut(s) 61, 232
Hpy166II GTNNAC 3 cut(s) 136, 647, 1073
Hpy188I TCNGA 2 cut(s) 65, 89
Hpy188III TCNNGA 6 cut(s) 22, 148, 227, 608, 699, 729
Hpy8I GTNNAC 3 cut(s) 136, 647, 1073
HpyAV CCTTC 2 cut(s) 714, 744
HpyCH4III ACNGT 1 cut(s) 181
HpyCH4IV ACGT 1 cut(s) 493
HpyCH4V TGCA 1 cut(s) 223
HpyF10VI GCNNNNNNNGC 1 cut(s) 1097
HpyF3I CTNAG 2 cut(s) 114, 342
HpySE526I ACGT 1 cut(s) 493
Hsp92I GRCGYC 1 cut(s) 81
Hsp92II CATG 1 cut(s) 314
HspAI GCGC 1 cut(s) 81
KasI GGCGCC 1 cut(s) 80
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 4 cut(s) 37, 45, 123, 382
LweI GCATC 1 cut(s) 232
MaeI CTAG 2 cut(s) 389, 1080
MaeII ACGT 1 cut(s) 493
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 3 cut(s) 217, 479, 648
MflI RGATCY 1 cut(s) 60
MhlI GDGCHC 1 cut(s) 42
MluCI AATT 3 cut(s) 141, 327, 412
Mly113I GGCGCC 1 cut(s) 81
MlyI GAGTC 2 cut(s) 27, 298
MseI TTAA 1 cut(s) 350
MspI CCGG 4 cut(s) 13, 35, 801, 822
MspR9I CCNGG 4 cut(s) 77, 122, 963, 1097
MvaI CCWGG 4 cut(s) 77, 122, 963, 1097
MwoI GCNNNNNNNGC 1 cut(s) 1097
NarI GGCGCC 1 cut(s) 81
NdeI CATATG 1 cut(s) 475
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 314
NlaIV GGNNCC 6 cut(s) 82, 213, 270, 799, 820, 919
PasI CCCWGGG 1 cut(s) 76
PfeI GAWTC 2 cut(s) 66, 470
PfoI TCCNGGA 1 cut(s) 120
PleI GAGTC 2 cut(s) 26, 298
PluTI GGCGCC 1 cut(s) 84
PpsI GAGTC 2 cut(s) 26, 298
PpuMI RGGWCCY 3 cut(s) 701, 731, 959
Psp124BI GAGCTC 1 cut(s) 42
Psp5II RGGWCCY 3 cut(s) 701, 731, 959
Psp6I CCWGG 4 cut(s) 75, 120, 961, 1095
PspGI CCWGG 4 cut(s) 75, 120, 961, 1095
PspN4I GGNNCC 6 cut(s) 82, 213, 270, 799, 820, 919
PspPI GGNCC 5 cut(s) 446, 663, 701, 731, 959
PspPPI RGGWCCY 3 cut(s) 701, 731, 959
PsuI RGATCY 1 cut(s) 60
RsaI GTAC 3 cut(s) 291, 982, 1003
RsaNI GTAC 3 cut(s) 290, 981, 1002
SacI GAGCTC 1 cut(s) 42
SaqAI TTAA 1 cut(s) 350
Sau3AI GATC 1 cut(s) 60
Sau96I GGNCC 5 cut(s) 446, 663, 701, 731, 959
SchI GAGTC 2 cut(s) 27, 298
ScrFI CCNGG 4 cut(s) 77, 122, 963, 1097
SduI GDGCHC 1 cut(s) 42
SfaNI GCATC 1 cut(s) 232
SfoI GGCGCC 1 cut(s) 82
SinI GGWCC 4 cut(s) 446, 701, 731, 959
Sse9I AATT 3 cut(s) 141, 327, 412
SsiI CCGC 1 cut(s) 365
SspDI GGCGCC 1 cut(s) 80
SspMI CTAG 2 cut(s) 389, 1080
SstI GAGCTC 1 cut(s) 42
StyD4I CCNGG 4 cut(s) 75, 120, 961, 1095
TaaI ACNGT 1 cut(s) 181
TaiI ACGT 1 cut(s) 496
TaqI TCGA 2 cut(s) 21, 481
TasI AATT 3 cut(s) 141, 327, 412
TfiI GAWTC 2 cut(s) 66, 470
Tru1I TTAA 1 cut(s) 350
Tru9I TTAA 1 cut(s) 350
TscAI CASTG 2 cut(s) 186, 928
TspGWI ACGGA 1 cut(s) 1078
TspRI CASTG 2 cut(s) 186, 928
VpaK11BI GGWCC 4 cut(s) 446, 701, 731, 959
XspI CTAG 2 cut(s) 389, 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.