AT2G26640

3-ketoacyl-coa synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0003748
Physical Location & Seq
Forward (+)
11329719 .. 11331858
2140 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G26640.1

Sequence Viewer

Length: 1530 bp
ATGGATGTAGAGCAAAAGAAACCGTTAATCGAATCATCAGATCGTAATCTACCTGATTTCAAAAAATCAGTGAAGCTTAAATATGTGAAGCTTGGTTACCATTACCTTATCACTCATGGAATGTACCTTTTCCTCTCCCCATTAGTACTTGTAATCGCTGCACAGATTTCAACTTTCTCTGTCACCGATCTTCGTAGCCTCTGGGAGCATCTTCAGTACAATCTTATCTCAGTGGTTGTTTGTTCTATGCTGCTTGTTTTCTTAATGACTATTTACTTCATGACTCGACCACGTCCTGTCTACTTGGTGAACTTCTCGTGCTTTAAACCCGATGAGTCACGAAAATGCACTAAAAAGATCTTTATGGATCGTTCTAAACTCACTGGCTCTTTCACAGAGGAGAATCTTGAGTTCCAGCGTAAGATTCTACAACGTTCGGGGCTCGGGGAATCGACTTACTTACCCGAGGCTGTACTTAATGTTCCGCCTAACCCGTGTATGAAAGAAGCTCGAAAAGAGGCCGAGACTGTTATGTTTGGAGCTATTGATGAGCTTCTTGCGAAGACGAATGTGAACCCGAAGGATATTGGGATCTTGATTGTTAACTGTAGTTTGTTTAACCCGACACCTTCGTTATCTGCTATGGTTGTTAATCACTATAAGCTCCGCGGGAATATACTTAGTTACAACTTGGGAGGAATGGGTTGCAGTGCTGGTTTGATTTCTATTGATCTTGCTAAACATCTTCTTCACTCTATTCCCAACACTTATGCAATGGTGATTAGTATGGAGAACATTACGTTGAACTGGTATTTCGGGAATGACCGGTCGAAGCTTGTTTCTAATTGTCTGTTTAGAATGGGAGGTGCAGCGATTCTTCTTTCGAACAAAAGATGGGACAGAAGAAGATCGAAATATGAGCTTGTTGATACGGTTAGGACTCACAAGGGAGCTGATGATAAGTGTTTTGGTTGCATAACTCAAGAAGAGGATTCCGCAAGTAAGATTGGTGTTACCTTGTCGAAAGAACTTATGGCTGTTGCGGGTGATGCTCTAAAGACAAATATTACGACGTTAGGACCACTGGTTTTACCGACATCTGAACAGCTTCTGTTCTTTGCAACGTTAGTGGGAAGAAAACTCTTCAAGATGAAGATCAAGCCTTACATCCCAGACTTCAAACTAGCGTTTGAGCATTTCTGCATCCACGCAGGAGGGAGAGCTGTTCTTGATGAATTGGAGAAGAACTTGAAACTCACAGAGTGGCATATGGAGCCCTCGAGGATGACACTCTACCGTTTTGGTAACACGTCCAGTTCTTCTTTGTGGTATGAATTAGCATATAGTGAGGCCAAAGGAAGGATCAAGAAAGGTGATAGAATTTGGCAGATAGCTTTTGGTTCGGGGTTCAAGTGCAACAGCTCGGTTTGGAGAGCGGTAAGGTCGGTAAACCCTAAGAAAGAGAAGAACCCATGGATGGATGAAATTCATGAGTTCCCAGTTGAAGTCCCCAAGGTCTCCACAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

509

Amino Acids

57.81

Weight (kDa)

9.25

Isoelectric Point (pI)

37.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 92 - 381 2.9e-141 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 398 - 478 2.3e-10 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 400 - 480 1.4e-08 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 1279
AccBSI CCGCTC 1 cut(s) 1436
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 669
AciI CCGC 6 cut(s) 485, 667, 669, 996, 1043, 1436
AclI AACGTT 2 cut(s) 433, 1124
AclWI GGATC 3 cut(s) 375, 599, 1370
AcsI RAATTY 2 cut(s) 1380, 1485
AcuI CTGAAG 1 cut(s) 197
AdeI CACNNNGTG 1 cut(s) 1263
AfaI GTAC 4 cut(s) 125, 147, 218, 474
AfiI CCNNNNNNNGG 2 cut(s) 1359, 1477
AflIII ACRYGT 1 cut(s) 1308
AgeI ACCGGT 1 cut(s) 825
AgsI TTSAA 8 cut(s) 61, 171, 805, 1147, 1180, 1252, 1411, 1505
AjiI CACGTC 2 cut(s) 293, 1311
Alw26I GTCTC 2 cut(s) 518, 1522
AlwI GGATC 3 cut(s) 375, 599, 1370
AlwNI CAGNNNCTG 1 cut(s) 1111
Ama87I CYCGRG 3 cut(s) 443, 464, 1279
AoxI GGCC 2 cut(s) 519, 1350
ApeKI GCWGC 3 cut(s) 158, 250, 869
ApoI RAATTY 2 cut(s) 1380, 1485
AsiGI ACCGGT 1 cut(s) 825
Asp700I GAANNNNTTC 1 cut(s) 1107
AspS9I GGNCC 1 cut(s) 1079
AsuHPI GGTGA 5 cut(s) 175, 319, 790, 1058, 1385
AsuII TTCGAA 1 cut(s) 884
AvaI CYCGRG 3 cut(s) 443, 464, 1279
AvaII GGWCC 1 cut(s) 1079
BanII GRGCYC 2 cut(s) 444, 1278
BarI GAAGNNNNNNTAC 2 cut(s) 80, 112
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 569
BbvI GCAGC 3 cut(s) 145, 237, 881
BccI CCATC 2 cut(s) 888, 1471
BcoDI GTCTC 2 cut(s) 518, 1522
BfaI CTAG 2 cut(s) 1184, 1528
BfmI CTRYAG 1 cut(s) 607
BglII AGATCT 1 cut(s) 357
BisI GCNGC 3 cut(s) 159, 251, 870
BlsI GCNGC 3 cut(s) 160, 252, 871
BmcAI AGTACT 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 1079
BmeT110I CYCGRG 3 cut(s) 443, 464, 1279
BmgBI CACGTC 2 cut(s) 293, 1311
BmgT120I GGNCC 1 cut(s) 1079
BmiI GGNNCC 1 cut(s) 1275
BmrI ACTGGG 1 cut(s) 1493
BmsI GCATC 3 cut(s) 217, 1039, 1212
BmuI ACTGGG 1 cut(s) 1493
BpiI GAAGAC 1 cut(s) 569
Bpu14I TTCGAA 1 cut(s) 884
BpuEI CTTGAG 2 cut(s) 428, 966
BsaBI GATNNNNATC 2 cut(s) 45, 1154
BsaI GGTCTC 1 cut(s) 1522
BsaJI CCNNGG 4 cut(s) 465, 667, 1472, 1512
BsaWI WCCGGW 1 cut(s) 825
Bsc4I CCNNNNNNNGG 2 cut(s) 1359, 1477
Bse118I RCCGGY 1 cut(s) 825
Bse1I ACTGG 5 cut(s) 388, 812, 1089, 1314, 1499
Bse3DI GCAATG 1 cut(s) 780
Bse8I GATNNNNATC 2 cut(s) 45, 1154
BseDI CCNNGG 4 cut(s) 465, 667, 1472, 1512
BseGI GGATG 6 cut(s) 10, 1167, 1203, 1290, 1482, 1486
BseJI GATNNNNATC 2 cut(s) 45, 1154
BseLI CCNNNNNNNGG 2 cut(s) 1359, 1477
BseMI GCAATG 1 cut(s) 780
BseMII CTCAG 1 cut(s) 243
BseNI ACTGG 5 cut(s) 388, 812, 1089, 1314, 1499
BseRI GAGGAG 1 cut(s) 413
BseXI GCAGC 3 cut(s) 145, 237, 881
BsgI GTGCAG 2 cut(s) 144, 888
Bsh1236I CGCG 1 cut(s) 669
Bsh1285I CGRYCG 1 cut(s) 830
BshFI GGCC 2 cut(s) 521, 1352
BshTI ACCGGT 1 cut(s) 825
BsiEI CGRYCG 1 cut(s) 830
BsiHKCI CYCGRG 3 cut(s) 443, 464, 1279
BsiSI CCGG 1 cut(s) 826
BslFI GGGAC 2 cut(s) 911, 1493
BslI CCNNNNNNNGG 2 cut(s) 1359, 1477
BsmAI GTCTC 2 cut(s) 518, 1522
BsmFI GGGAC 2 cut(s) 911, 1493
BsnI GGCC 2 cut(s) 521, 1352
Bso31I GGTCTC 1 cut(s) 1522
BsoBI CYCGRG 3 cut(s) 443, 464, 1279
Bsp119I TTCGAA 1 cut(s) 884
Bsp1286I GDGCHC 2 cut(s) 444, 1278
Bsp143I GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
Bsp19I CCATGG 1 cut(s) 1472
BspACI CCGC 6 cut(s) 485, 667, 669, 996, 1043, 1436
BspANI GGCC 2 cut(s) 521, 1352
BspCNI CTCAG 1 cut(s) 242
BspFNI CGCG 1 cut(s) 669
BspHI TCATGA 2 cut(s) 279, 1489
BspLI GGNNCC 1 cut(s) 1275
BspPI GGATC 3 cut(s) 375, 599, 1370
BspT104I TTCGAA 1 cut(s) 884
BspTNI GGTCTC 1 cut(s) 1522
BsrBI CCGCTC 1 cut(s) 1436
BsrDI GCAATG 1 cut(s) 780
BsrFI RCCGGY 1 cut(s) 825
BsrI ACTGG 5 cut(s) 388, 812, 1089, 1314, 1499
BssAI RCCGGY 1 cut(s) 825
BssECI CCNNGG 4 cut(s) 465, 667, 1472, 1512
BssMI GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 2 cut(s) 1472, 1512
Bst2BI CACGAG 1 cut(s) 316
Bst4CI ACNGT 5 cut(s) 24, 529, 608, 934, 1298
Bst6I CTCTTC 2 cut(s) 981, 1148
BstBI TTCGAA 1 cut(s) 884
BstDEI CTNAG 3 cut(s) 229, 680, 1455
BstDSI CCRYGG 2 cut(s) 667, 1472
BstEII GGTNACC 1 cut(s) 95
BstF5I GGATG 6 cut(s) 10, 1167, 1203, 1290, 1482, 1486
BstFNI CGCG 1 cut(s) 669
BstKTI GATC 9 cut(s) 43, 190, 360, 370, 594, 733, 911, 1158, 1365
BstMAI GTCTC 2 cut(s) 518, 1522
BstMBI GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
BstMCI CGRYCG 1 cut(s) 830
BstMWI GCNNNNNNNGC 2 cut(s) 1049, 1273
BstPI GGTNACC 1 cut(s) 95
BstSFI CTRYAG 1 cut(s) 607
BstUI CGCG 1 cut(s) 669
BstV1I GCAGC 3 cut(s) 145, 237, 881
BstV2I GAAGAC 1 cut(s) 569
BstX2I RGATCY 2 cut(s) 357, 591
BstYI RGATCY 2 cut(s) 357, 591
BsuRI GGCC 2 cut(s) 521, 1352
BtgI CCRYGG 2 cut(s) 667, 1472
BtrI CACGTC 2 cut(s) 293, 1311
BtsCI GGATG 6 cut(s) 10, 1167, 1203, 1290, 1482, 1486
BtsI GCAGTG 1 cut(s) 715
BtsIMutI CAGTG 5 cut(s) 75, 237, 381, 715, 1082
CaiI CAGNNNCTG 1 cut(s) 1111
CciI TCATGA 2 cut(s) 279, 1489
Cfr10I RCCGGY 1 cut(s) 825
Cfr13I GGNCC 1 cut(s) 1079
Cfr42I CCGCGG 1 cut(s) 670
Csp6I GTAC 4 cut(s) 124, 146, 217, 473
CspAI ACCGGT 1 cut(s) 825
CspCI CAANNNNNGTGG 2 cut(s) 1110, 1145
CviAII CATG 4 cut(s) 116, 280, 1473, 1490
CviQI GTAC 4 cut(s) 124, 146, 217, 473
DdeI CTNAG 3 cut(s) 229, 680, 1455
DpnI GATC 9 cut(s) 42, 189, 359, 369, 593, 732, 910, 1157, 1364
DpnII GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
DraI TTTAAA 1 cut(s) 325
DraIII CACNNNGTG 1 cut(s) 1263
Eam1104I CTCTTC 2 cut(s) 981, 1148
EarI CTCTTC 2 cut(s) 981, 1148
EciI GGCGGA 1 cut(s) 474
Eco130I CCWWGG 2 cut(s) 1472, 1512
Eco24I GRGCYC 2 cut(s) 444, 1278
Eco31I GGTCTC 1 cut(s) 1522
Eco47I GGWCC 1 cut(s) 1079
Eco57I CTGAAG 1 cut(s) 197
Eco88I CYCGRG 3 cut(s) 443, 464, 1279
Eco91I GGTNACC 1 cut(s) 95
EcoO65I GGTNACC 1 cut(s) 95
EcoT14I CCWWGG 2 cut(s) 1472, 1512
EcoT38I GRGCYC 2 cut(s) 444, 1278
ErhI CCWWGG 2 cut(s) 1472, 1512
FaeI CATG 4 cut(s) 119, 283, 1476, 1493
FaqI GGGAC 2 cut(s) 911, 1493
FatI CATG 4 cut(s) 115, 279, 1472, 1489
FauI CCCGC 2 cut(s) 662, 1036
FauNDI CATATG 1 cut(s) 1269
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 3 cut(s) 159, 251, 870
FokI GGATG 6 cut(s) 17, 1154, 1190, 1297, 1489, 1493
FriOI GRGCYC 2 cut(s) 444, 1278
Fsp4HI GCNGC 3 cut(s) 159, 251, 870
FspBI CTAG 2 cut(s) 1184, 1528
GluI GCNGC 3 cut(s) 159, 251, 870
HaeIII GGCC 2 cut(s) 521, 1352
HapII CCGG 1 cut(s) 826
Hin1II CATG 4 cut(s) 119, 283, 1476, 1493
HincII GTYRAC 1 cut(s) 604
HindII GTYRAC 1 cut(s) 604
HindIII AAGCTT 3 cut(s) 74, 89, 833
HinfI GANTC 9 cut(s) 32, 283, 335, 403, 424, 449, 874, 940, 992
HpaI GTTAAC 1 cut(s) 604
HpaII CCGG 1 cut(s) 826
HphI GGTGA 5 cut(s) 175, 319, 790, 1058, 1385
Hpy166II GTNNAC 5 cut(s) 301, 310, 574, 604, 1450
Hpy188I TCNGA 2 cut(s) 40, 1102
Hpy8I GTNNAC 5 cut(s) 301, 310, 574, 604, 1450
Hpy99I CGWCG 1 cut(s) 1075
HpyAV CCTTC 3 cut(s) 574, 639, 1353
HpyCH4III ACNGT 5 cut(s) 24, 529, 608, 934, 1298
HpyCH4IV ACGT 6 cut(s) 292, 433, 800, 1073, 1124, 1310
HpyCH4V TGCA 9 cut(s) 161, 348, 708, 773, 869, 975, 1121, 1203, 1416
HpyF10VI GCNNNNNNNGC 2 cut(s) 1049, 1273
HpyF3I CTNAG 3 cut(s) 229, 680, 1455
HpySE526I ACGT 6 cut(s) 292, 433, 800, 1073, 1124, 1310
Hsp92II CATG 4 cut(s) 119, 283, 1476, 1493
KspAI GTTAAC 1 cut(s) 604
KspI CCGCGG 1 cut(s) 670
Kzo9I GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
LmnI GCTCC 5 cut(s) 205, 539, 669, 950, 1273
Lsp1109I GCAGC 3 cut(s) 145, 237, 881
LweI GCATC 3 cut(s) 217, 1039, 1212
MaeI CTAG 2 cut(s) 1184, 1528
MaeII ACGT 6 cut(s) 292, 433, 800, 1073, 1124, 1310
MaeIII GTNAC 6 cut(s) 95, 181, 336, 683, 1012, 1304
MalI GATC 9 cut(s) 42, 189, 359, 369, 593, 732, 910, 1157, 1364
MbiI CCGCTC 1 cut(s) 1436
MboI GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
MflI RGATCY 2 cut(s) 357, 591
MhlI GDGCHC 2 cut(s) 444, 1278
MluCI AATT 5 cut(s) 844, 1235, 1334, 1380, 1485
MlyI GAGTC 3 cut(s) 277, 344, 934
MroXI GAANNNNTTC 1 cut(s) 1107
MseI TTAA 8 cut(s) 26, 78, 263, 324, 477, 603, 618, 651
MslI CAYNNNNRTG 1 cut(s) 343
MspA1I CMGCKG 1 cut(s) 669
MspI CCGG 1 cut(s) 826
MvnI CGCG 1 cut(s) 669
MwoI GCNNNNNNNGC 2 cut(s) 1049, 1273
NcoI CCATGG 1 cut(s) 1472
NdeI CATATG 1 cut(s) 1269
NdeII GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
NlaIII CATG 4 cut(s) 119, 283, 1476, 1493
NlaIV GGNNCC 1 cut(s) 1275
NmeAIII GCCGAG 1 cut(s) 547
NmuCI GTSAC 2 cut(s) 181, 336
NspV TTCGAA 1 cut(s) 884
PaeR7I CTCGAG 1 cut(s) 1279
PagI TCATGA 2 cut(s) 279, 1489
PdmI GAANNNNTTC 1 cut(s) 1107
PfeI GAWTC 6 cut(s) 32, 403, 424, 449, 874, 992
PflFI GACNNNGTC 1 cut(s) 291
PinAI ACCGGT 1 cut(s) 825
PkrI GCNGC 3 cut(s) 160, 252, 871
PleI GAGTC 3 cut(s) 277, 343, 934
PpsI GAGTC 3 cut(s) 277, 343, 934
Psp1406I AACGTT 2 cut(s) 433, 1124
PspEI GGTNACC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 1275
PspPI GGNCC 1 cut(s) 1079
PspXI VCTCGAGB 1 cut(s) 1279
PsrI GAACNNNNNNTAC 2 cut(s) 465, 497
PstNI CAGNNNCTG 1 cut(s) 1111
PsuI RGATCY 2 cut(s) 357, 591
PsyI GACNNNGTC 1 cut(s) 291
RsaI GTAC 4 cut(s) 125, 147, 218, 474
RsaNI GTAC 4 cut(s) 124, 146, 217, 473
RseI CAYNNNNRTG 1 cut(s) 343
SacII CCGCGG 1 cut(s) 670
SaqAI TTAA 8 cut(s) 26, 78, 263, 324, 477, 603, 618, 651
SatI GCNGC 3 cut(s) 159, 251, 870
Sau3AI GATC 9 cut(s) 40, 187, 357, 367, 591, 730, 908, 1155, 1362
Sau96I GGNCC 1 cut(s) 1079
ScaI AGTACT 1 cut(s) 147
SchI GAGTC 3 cut(s) 277, 344, 934
SduI GDGCHC 2 cut(s) 444, 1278
SfaNI GCATC 3 cut(s) 217, 1039, 1212
SfcI CTRYAG 1 cut(s) 607
Sfr274I CTCGAG 1 cut(s) 1279
Sfr303I CCGCGG 1 cut(s) 670
SfuI TTCGAA 1 cut(s) 884
SgrBI CCGCGG 1 cut(s) 670
SinI GGWCC 1 cut(s) 1079
SlaI CTCGAG 1 cut(s) 1279
SmiMI CAYNNNNRTG 1 cut(s) 343
SmlI CTYRAG 3 cut(s) 407, 981, 1279
SmoI CTYRAG 3 cut(s) 407, 981, 1279
Sse9I AATT 5 cut(s) 844, 1235, 1334, 1380, 1485
SsiI CCGC 6 cut(s) 485, 667, 669, 996, 1043, 1436
SspI AATATT 1 cut(s) 1066
SspMI CTAG 2 cut(s) 1184, 1528
StyI CCWWGG 2 cut(s) 1472, 1512
TaaI ACNGT 5 cut(s) 24, 529, 608, 934, 1298
TaiI ACGT 6 cut(s) 295, 436, 803, 1076, 1127, 1313
TaqI TCGA 9 cut(s) 30, 286, 452, 511, 830, 884, 911, 1022, 1280
TasI AATT 5 cut(s) 844, 1235, 1334, 1380, 1485
TatI WGTACW 3 cut(s) 145, 216, 472
TfiI GAWTC 6 cut(s) 32, 403, 424, 449, 874, 992
Tru1I TTAA 8 cut(s) 26, 78, 263, 324, 477, 603, 618, 651
Tru9I TTAA 8 cut(s) 26, 78, 263, 324, 477, 603, 618, 651
TscAI CASTG 5 cut(s) 75, 237, 388, 715, 1089
TseFI GTSAC 2 cut(s) 181, 336
TseI GCWGC 3 cut(s) 158, 250, 869
Tsp45I GTSAC 2 cut(s) 181, 336
TspDTI ATGAA 7 cut(s) 268, 515, 1166, 1248, 1347, 1478, 1497
TspRI CASTG 5 cut(s) 75, 237, 388, 715, 1089
Tth111I GACNNNGTC 1 cut(s) 291
VpaK11BI GGWCC 1 cut(s) 1079
XapI RAATTY 2 cut(s) 1380, 1485
XhoI CTCGAG 1 cut(s) 1279
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 1107
XspI CTAG 2 cut(s) 1184, 1528
ZrmI AGTACT 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.