Prupe.7G236700_v2.0.a1

3-ketoacyl-CoA synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp07
Physical Location & Seq
Forward (+)
20533989 .. 20536979
2991 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.7G236700.1

Sequence Viewer

Length: 1560 bp
ATGACAGAGCCGAAACCAGACACACCCTTGATCCCACCATCTTCATCATCATCATCATCATCATCATCATCGCGAAACCTTCCGGACTTCAAAAATTCAGTTAAACTAAAATATGTGAAGCTTGGTTACCATATTCTCATTACCCATGGAATGTACCTCTTTCTTTCCCCTCTTGTTGTTGTTATCGCTGCCCAGATCTCAACATTTTCTCTCCAAGATCTGTATGATCTTTGGGAGCATCTCCAATACAACCTAATTTCGGTGATTATCTGCTCGACTCTCCTTGTTTTCCTATCCACTGTCTACTTTCTCACCCGCCCTCGCCCAGTGTACCTTGTTAACTTTTCCTGCTACAAGCCAGAAGAATCTCGAAAATGCACGAAAAAGATTTTTATGGATCAGTCTCAAATGACTGGTACATTCACAGAGGAGAATCTTCAGTTCCAGCGAAGGATTCTTGAGAGATCTGGCCTTGGGGATTCAACTTACCTTCCAGAGGCTGTACTCAACATTCCTCCAAATCCGTCAATGAAAGAAGCTAGAAAAGAAGCTGAGGCTGTGATGTTTGGTGCCATTGATGAGCTTTTCGCTAAGACAGCTGTAAAACCTAAGGACATTGGAATCTTGATTGTGAACTGCAGCTTGTTCAATCCAACCCCATCTCTTTCTGCCATGGTTATCAACCATTACCAGCTTCGAGGGAACATAGTCAGCTATAATCTTGGTGGGATGGGCTGCAGTGCAGGTCTGATCTCAATTGATCTTGCTAAAAATCTTCTTCAGGTGCATCCTAACTCTTATGCACTGGTAATCAGCATGGAGAACATCACATTGAACTGGTACTTTGGAAATGATCGCTCAAAGCTTGTCTCAAATTGCTTATTTCGGATGGGAGGGGCTGCTATATTGCTTTCAAACAAAAGCTCAGACAGAAGACGGTCCAAATACCGATTAGTTCACACTGTTCGAACCCACAAGGGTGCTGATGATAAGTGCTTTAGCTGTGTTACCCAAGAAGAAGACTCCAATGGAAAGATTGGTGTTACTTTGTCAAAGGATCTGATGGCAGTAGCAGGTGATGCTTTAAAGACCAACATCACCACATTGGGCCCTCTTGTTCTGCCAATGTCTGAACAGCTGCTTTTCTTTGCTACATTGATTGGGAGGAAACTTTTCAAAAGGAAGATCAAACCTTACATCCCAGATTTCAGACTAGCTTTTGAGCATTTCTGTATTCATGCTGGAGGAAGAGCCGTATTGGATGAATTGGAGAAGAACCTGCATCTATCTGATTGGCATATGGAGCCATCAAGGATGACACTCCATCGATTTGGAAACACATCGAGCAGTTCTCTCTGGTATGAATTAGCTTATACAGAAGCCAAGGGAAGGATGAAGAAAGGAGATAGAACATGGCAGATAGCTTTTGGGTCGGGATTCAAGTGTAACAGTGCTGTGTGGAAGGCTCTTAAGAGCATAAATCCAGCAAAGGAAAAGAACCCATGGATGGATGAAATTGATCGGTTCCCCGTAGATGTTCCAAAGGTGTCAACCTTCTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

520

Amino Acids

58.39

Weight (kDa)

9.22

Isoelectric Point (pI)

43.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1064
Acc36I ACCTGC 3 cut(s) 734, 1064, 1287
AccB1I GGYRCC 1 cut(s) 569
AccI GTMKAC 1 cut(s) 303
AccII CGCG 1 cut(s) 73
AccIII TCCGGA 1 cut(s) 82
AciI CCGC 1 cut(s) 316
AclWI GGATC 3 cut(s) 25, 405, 1065
AcsI RAATTY 1 cut(s) 94
AcuI CTGAAG 2 cut(s) 422, 764
AfaI GTAC 5 cut(s) 155, 332, 418, 504, 842
AfiI CCNNNNNNNGG 4 cut(s) 259, 496, 1389, 1507
AflII CTTAAG 1 cut(s) 1469
AgsI TTSAA 7 cut(s) 91, 483, 649, 835, 915, 1177, 1441
AleI CACNNNNGTG 1 cut(s) 978
Alw26I GTCTC 2 cut(s) 408, 874
AlwI GGATC 3 cut(s) 25, 405, 1065
AlwNI CAGNNNCTG 1 cut(s) 500
Aor13HI TCCGGA 1 cut(s) 82
AoxI GGCC 2 cut(s) 469, 1108
ApaI GGGCCC 1 cut(s) 1112
ApeKI GCWGC 5 cut(s) 188, 639, 735, 899, 1138
ApoI RAATTY 1 cut(s) 94
Asp700I GAANNNNTTC 1 cut(s) 1172
AspS9I GGNCC 3 cut(s) 939, 1108, 1109
AsuHPI GGTGA 4 cut(s) 274, 304, 1088, 1090
AsuII TTCGAA 1 cut(s) 967
AvaII GGWCC 1 cut(s) 939
AxyI CCTNAGG 1 cut(s) 609
BaeGI GKGCMC 1 cut(s) 1112
BanI GGYRCC 1 cut(s) 569
BanII GRGCYC 1 cut(s) 1112
BarI GAAGNNNNNNTAC 2 cut(s) 110, 142
BbsI GAAGAC 2 cut(s) 940, 1026
BbvCI CCTCAGC 1 cut(s) 552
BbvI GCAGC 5 cut(s) 175, 651, 722, 886, 1125
BccI CCATC 8 cut(s) 46, 667, 724, 883, 1057, 1315, 1332, 1501
BceAI ACGGC 1 cut(s) 1238
BcoDI GTCTC 2 cut(s) 408, 874
BfaI CTAG 2 cut(s) 540, 1214
BfmI CTRYAG 2 cut(s) 637, 736
BfrI CTTAAG 1 cut(s) 1469
BfuAI ACCTGC 3 cut(s) 734, 1064, 1287
BglII AGATCT 3 cut(s) 195, 217, 464
BisI GCNGC 5 cut(s) 189, 640, 736, 900, 1139
BlsI GCNGC 5 cut(s) 190, 641, 737, 901, 1140
Bme18I GGWCC 1 cut(s) 939
BmgT120I GGNCC 3 cut(s) 939, 1108, 1109
BmiI GGNNCC 4 cut(s) 571, 1110, 1305, 1526
BmrI ACTGGG 1 cut(s) 320
BmsI GCATC 4 cut(s) 247, 796, 1069, 1291
BmuI ACTGGG 1 cut(s) 320
BpiI GAAGAC 2 cut(s) 940, 1026
BplI GAGNNNNNCTC 2 cut(s) 1336, 1368
BpmI CTGGAG 1 cut(s) 1263
Bpu10I CCTNAGC 1 cut(s) 552
Bpu14I TTCGAA 1 cut(s) 967
BpuEI CTTGAG 1 cut(s) 479
Bsa29I ATCGAT 1 cut(s) 1327
BsaJI CCNNGG 5 cut(s) 145, 472, 672, 1383, 1502
BsaWI WCCGGW 1 cut(s) 82
Bsc4I CCNNNNNNNGG 4 cut(s) 259, 496, 1389, 1507
Bse1I ACTGG 4 cut(s) 326, 418, 810, 842
Bse21I CCTNAGG 1 cut(s) 609
BseAI TCCGGA 1 cut(s) 82
BseCI ATCGAT 1 cut(s) 1327
BseDI CCNNGG 5 cut(s) 145, 472, 672, 1383, 1502
BseGI GGATG 9 cut(s) 735, 787, 894, 1197, 1267, 1320, 1398, 1512, 1516
BseLI CCNNNNNNNGG 4 cut(s) 259, 496, 1389, 1507
BseMII CTCAG 2 cut(s) 543, 939
BseNI ACTGG 4 cut(s) 326, 418, 810, 842
BseRI GAGGAG 1 cut(s) 443
BseSI GKGCMC 1 cut(s) 1112
BseXI GCAGC 5 cut(s) 175, 651, 722, 886, 1125
BsgI GTGCAG 1 cut(s) 762
Bsh1236I CGCG 1 cut(s) 73
BshFI GGCC 2 cut(s) 471, 1110
BshNI GGYRCC 1 cut(s) 569
BshVI ATCGAT 1 cut(s) 1327
BsiSI CCGG 1 cut(s) 83
BslI CCNNNNNNNGG 4 cut(s) 259, 496, 1389, 1507
BsmAI GTCTC 2 cut(s) 408, 874
BsnI GGCC 2 cut(s) 471, 1110
Bsp119I TTCGAA 1 cut(s) 967
Bsp120I GGGCCC 1 cut(s) 1108
Bsp1286I GDGCHC 1 cut(s) 1112
Bsp13I TCCGGA 1 cut(s) 82
Bsp19I CCATGG 3 cut(s) 145, 672, 1502
Bsp68I TCGCGA 1 cut(s) 73
BspACI CCGC 1 cut(s) 316
BspANI GGCC 2 cut(s) 471, 1110
BspCNI CTCAG 2 cut(s) 544, 938
BspDI ATCGAT 1 cut(s) 1327
BspEI TCCGGA 1 cut(s) 82
BspFNI CGCG 1 cut(s) 73
BspLI GGNNCC 4 cut(s) 571, 1110, 1305, 1526
BspMAI CTGCAG 2 cut(s) 641, 740
BspMI ACCTGC 3 cut(s) 734, 1064, 1287
BspPI GGATC 3 cut(s) 25, 405, 1065
BspQI GCTCTTC 1 cut(s) 1243
BspT104I TTCGAA 1 cut(s) 967
BspT107I GGYRCC 1 cut(s) 569
BspTI CTTAAG 1 cut(s) 1469
BsrI ACTGG 4 cut(s) 326, 418, 810, 842
BssECI CCNNGG 5 cut(s) 145, 472, 672, 1383, 1502
BssT1I CCWWGG 5 cut(s) 145, 472, 672, 1383, 1502
Bst4CI ACNGT 4 cut(s) 301, 939, 964, 1451
Bst6I CTCTTC 1 cut(s) 1243
BstAFI CTTAAG 1 cut(s) 1469
BstAPI GCANNNNNTGC 1 cut(s) 1079
BstBI TTCGAA 1 cut(s) 967
BstDEI CTNAG 4 cut(s) 552, 591, 609, 925
BstDSI CCRYGG 3 cut(s) 145, 672, 1502
BstEII GGTNACC 1 cut(s) 125
BstENI CCTNNNNNAGG 1 cut(s) 494
BstF5I GGATG 9 cut(s) 735, 787, 894, 1197, 1267, 1320, 1398, 1512, 1516
BstFNI CGCG 1 cut(s) 73
BstMAI GTCTC 2 cut(s) 408, 874
BstMWI GCNNNNNNNGC 3 cut(s) 596, 1079, 1303
BstPI GGTNACC 1 cut(s) 125
BstSFI CTRYAG 2 cut(s) 637, 736
BstSLI GKGCMC 1 cut(s) 1112
BstUI CGCG 1 cut(s) 73
BstV1I GCAGC 5 cut(s) 175, 651, 722, 886, 1125
BstV2I GAAGAC 2 cut(s) 940, 1026
BstX2I RGATCY 4 cut(s) 195, 217, 464, 1057
BstXI CCANNNNNNTGG 1 cut(s) 1331
BstYI RGATCY 4 cut(s) 195, 217, 464, 1057
Bsu15I ATCGAT 1 cut(s) 1327
Bsu36I CCTNAGG 1 cut(s) 609
BsuRI GGCC 2 cut(s) 471, 1110
BsuTUI ATCGAT 1 cut(s) 1327
BtgI CCRYGG 3 cut(s) 145, 672, 1502
BtgZI GCGATG 1 cut(s) 54
BtsCI GGATG 9 cut(s) 735, 787, 894, 1197, 1267, 1320, 1398, 1512, 1516
BtsI GCAGTG 1 cut(s) 745
BtsIMutI CAGTG 6 cut(s) 297, 333, 745, 803, 960, 1456
BtuMI TCGCGA 1 cut(s) 73
BveI ACCTGC 3 cut(s) 734, 1064, 1287
CaiI CAGNNNCTG 1 cut(s) 500
Cfr13I GGNCC 3 cut(s) 939, 1108, 1109
ClaI ATCGAT 1 cut(s) 1327
Csp6I GTAC 5 cut(s) 154, 331, 417, 503, 841
CviAII CATG 6 cut(s) 146, 673, 817, 1238, 1413, 1503
CviQI GTAC 5 cut(s) 154, 331, 417, 503, 841
DdeI CTNAG 4 cut(s) 552, 591, 609, 925
DraI TTTAAA 1 cut(s) 1086
Eam1104I CTCTTC 1 cut(s) 1243
EarI CTCTTC 1 cut(s) 1243
Eco130I CCWWGG 5 cut(s) 145, 472, 672, 1383, 1502
Eco24I GRGCYC 1 cut(s) 1112
Eco47I GGWCC 1 cut(s) 939
Eco57I CTGAAG 2 cut(s) 422, 764
Eco81I CCTNAGG 1 cut(s) 609
Eco91I GGTNACC 1 cut(s) 125
EcoNI CCTNNNNNAGG 1 cut(s) 494
EcoO109I RGGNCCY 1 cut(s) 1109
EcoO65I GGTNACC 1 cut(s) 125
EcoT14I CCWWGG 5 cut(s) 145, 472, 672, 1383, 1502
EcoT38I GRGCYC 1 cut(s) 1112
ErhI CCWWGG 5 cut(s) 145, 472, 672, 1383, 1502
FaeI CATG 6 cut(s) 149, 676, 820, 1241, 1416, 1506
FatI CATG 6 cut(s) 145, 672, 816, 1237, 1412, 1502
FauI CCCGC 1 cut(s) 323
FauNDI CATATG 1 cut(s) 1299
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 5 cut(s) 189, 640, 736, 900, 1139
FokI GGATG 9 cut(s) 742, 774, 901, 1184, 1274, 1327, 1405, 1519, 1523
FriOI GRGCYC 1 cut(s) 1112
Fsp4HI GCNGC 5 cut(s) 189, 640, 736, 900, 1139
FspBI CTAG 2 cut(s) 540, 1214
GluI GCNGC 5 cut(s) 189, 640, 736, 900, 1139
GsuI CTGGAG 1 cut(s) 1263
HaeIII GGCC 2 cut(s) 471, 1110
HapII CCGG 1 cut(s) 83
Hin1II CATG 6 cut(s) 149, 676, 820, 1241, 1416, 1506
HincII GTYRAC 2 cut(s) 340, 1551
HindII GTYRAC 2 cut(s) 340, 1551
HindIII AAGCTT 2 cut(s) 119, 863
HinfI GANTC 8 cut(s) 277, 365, 433, 454, 479, 621, 1022, 1437
HpaI GTTAAC 1 cut(s) 340
HpaII CCGG 1 cut(s) 83
HphI GGTGA 4 cut(s) 274, 304, 1088, 1090
Hpy166II GTNNAC 6 cut(s) 304, 331, 340, 634, 958, 1551
Hpy188I TCNGA 7 cut(s) 750, 888, 928, 1062, 1132, 1211, 1291
Hpy188III TCNNGA 7 cut(s) 72, 83, 369, 458, 494, 625, 1434
Hpy8I GTNNAC 6 cut(s) 304, 331, 340, 634, 958, 1551
HpyAV CCTTC 5 cut(s) 89, 444, 500, 1383, 1456
HpyCH4III ACNGT 4 cut(s) 301, 939, 964, 1451
HpyCH4V TGCA 7 cut(s) 378, 639, 738, 743, 787, 803, 1282
HpyF10VI GCNNNNNNNGC 3 cut(s) 596, 1079, 1303
HpyF3I CTNAG 4 cut(s) 552, 591, 609, 925
Hsp92II CATG 6 cut(s) 149, 676, 820, 1241, 1416, 1506
Kpn2I TCCGGA 1 cut(s) 82
KspAI GTTAAC 1 cut(s) 340
LguI GCTCTTC 1 cut(s) 1243
LmnI GCTCC 2 cut(s) 235, 1303
Lsp1109I GCAGC 5 cut(s) 175, 651, 722, 886, 1125
LweI GCATC 4 cut(s) 247, 796, 1069, 1291
MaeI CTAG 2 cut(s) 540, 1214
MaeIII GTNAC 4 cut(s) 125, 1006, 1042, 1445
MfeI CAATTG 1 cut(s) 756
MflI RGATCY 4 cut(s) 195, 217, 464, 1057
MhlI GDGCHC 1 cut(s) 1112
MluCI AATT 7 cut(s) 94, 255, 756, 874, 1265, 1364, 1515
MlyI GAGTC 2 cut(s) 271, 1016
MmeI TCCRAC 1 cut(s) 677
MroI TCCGGA 1 cut(s) 82
MroXI GAANNNNTTC 1 cut(s) 1172
MseI TTAA 4 cut(s) 102, 339, 1085, 1470
MslI CAYNNNNRTG 1 cut(s) 978
MspA1I CMGCKG 2 cut(s) 599, 1138
MspCI CTTAAG 1 cut(s) 1469
MspI CCGG 1 cut(s) 83
MunI CAATTG 1 cut(s) 756
MvnI CGCG 1 cut(s) 73
MwoI GCNNNNNNNGC 3 cut(s) 596, 1079, 1303
NcoI CCATGG 3 cut(s) 145, 672, 1502
NdeI CATATG 1 cut(s) 1299
NlaIII CATG 6 cut(s) 149, 676, 820, 1241, 1416, 1506
NlaIV GGNNCC 4 cut(s) 571, 1110, 1305, 1526
NruI TCGCGA 1 cut(s) 73
NspV TTCGAA 1 cut(s) 967
OliI CACNNNNGTG 1 cut(s) 978
PaqCI CACCTGC 1 cut(s) 1064
PciSI GCTCTTC 1 cut(s) 1243
PdmI GAANNNNTTC 1 cut(s) 1172
PfeI GAWTC 6 cut(s) 365, 433, 454, 479, 621, 1437
PkrI GCNGC 5 cut(s) 190, 641, 737, 901, 1140
PleI GAGTC 2 cut(s) 271, 1016
PpsI GAGTC 2 cut(s) 271, 1016
PspEI GGTNACC 1 cut(s) 125
PspN4I GGNNCC 4 cut(s) 571, 1110, 1305, 1526
PspOMI GGGCCC 1 cut(s) 1108
PspPI GGNCC 3 cut(s) 939, 1108, 1109
PstI CTGCAG 2 cut(s) 641, 740
PstNI CAGNNNCTG 1 cut(s) 500
PsuI RGATCY 4 cut(s) 195, 217, 464, 1057
PvuII CAGCTG 2 cut(s) 599, 1138
RruI TCGCGA 1 cut(s) 73
RsaI GTAC 5 cut(s) 155, 332, 418, 504, 842
RsaNI GTAC 5 cut(s) 154, 331, 417, 503, 841
RseI CAYNNNNRTG 1 cut(s) 978
SapI GCTCTTC 1 cut(s) 1243
SaqAI TTAA 4 cut(s) 102, 339, 1085, 1470
SatI GCNGC 5 cut(s) 189, 640, 736, 900, 1139
Sau96I GGNCC 3 cut(s) 939, 1108, 1109
SchI GAGTC 2 cut(s) 271, 1016
SduI GDGCHC 1 cut(s) 1112
SfaNI GCATC 4 cut(s) 247, 796, 1069, 1291
SfcI CTRYAG 2 cut(s) 637, 736
SfuI TTCGAA 1 cut(s) 967
SinI GGWCC 1 cut(s) 939
SmiMI CAYNNNNRTG 1 cut(s) 978
SmlI CTYRAG 2 cut(s) 458, 1469
SmoI CTYRAG 2 cut(s) 458, 1469
Sse9I AATT 7 cut(s) 94, 255, 756, 874, 1265, 1364, 1515
SsiI CCGC 1 cut(s) 316
SspMI CTAG 2 cut(s) 540, 1214
StyI CCWWGG 5 cut(s) 145, 472, 672, 1383, 1502
TaaI ACNGT 4 cut(s) 301, 939, 964, 1451
TaqI TCGA 6 cut(s) 275, 370, 697, 967, 1327, 1343
TasI AATT 7 cut(s) 94, 255, 756, 874, 1265, 1364, 1515
TatI WGTACW 1 cut(s) 502
TfiI GAWTC 6 cut(s) 365, 433, 454, 479, 621, 1437
Tru1I TTAA 4 cut(s) 102, 339, 1085, 1470
Tru9I TTAA 4 cut(s) 102, 339, 1085, 1470
TscAI CASTG 6 cut(s) 304, 333, 745, 810, 967, 1456
TseI GCWGC 5 cut(s) 188, 639, 735, 899, 1138
TspDTI ATGAA 7 cut(s) 33, 545, 1226, 1278, 1377, 1409, 1527
TspGWI ACGGA 1 cut(s) 513
TspRI CASTG 6 cut(s) 304, 333, 745, 810, 967, 1456
Vha464I CTTAAG 1 cut(s) 1469
VpaK11BI GGWCC 1 cut(s) 939
XagI CCTNNNNNAGG 1 cut(s) 494
XapI RAATTY 1 cut(s) 94
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 1172
XspI CTAG 2 cut(s) 540, 1214
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.