Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000197.1

Orthogroup ID

OG0003748

Physical Location & Seq

Genomic Coordinates Forward (+)

9274 .. 10821

Gene Structure 1548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000197.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

atggcggagccaaaaccagatacacccttgatcccaccatcatctacaccctcatccaatcggaacctccccgacttcaaaaaatccattaagctaaaatatgtgaagcttggttaccatattctcatcacccatggaatgtacctttttctttcccctctcgtggttgttattgctgcccaactctcaacattttcgctccaagatctttatgatctttgggagcatctccaatacaacctgatttcggtgattatctgctcgaccctcctggtgttcctatccactgtctactttcttacccgccctcgccctgtgtaccttgttaacttctcctgttacaagccagaagaaactcgaaaatgcaccaaaaagatctttatggaacagtctaagatgactggtacattctcagaggagaatctacagttccagagaaggatccttgagagatccggccttggagattcaacataccttccagaggctgtactcaacattcctccaaatccgtcaatgaaagaagccagaaaagaagctgaggcagtgatgtttggtgccattgacgaactttttgccaagacatctgtaaaacccaaggacattggaatattgattgtcaactgcagtttgttcaatccaactccgtctctttctgccatggttatcaaccattaccagcttcgagggaacatagtcagctacaatcttggtggaatgggatgcagcgcaggtctcatctcaattgatcttgctcaaaagcttcttcaggtgcatcctaactcttatgcgctggttatcagcatggagaacatcacattgaactggtactttgggaatgatcgctcaaagcttgtttcaaattgcttatttcggatgggaggggctgctatacttctttcaaacaaaagctcagacagaagaaggtccaaataccggttggttcaaactgtccgcacgcacaagggtgctgatgacaagtgctttagctgtgttacccaagaagaagatgatgctgggaagattggtgttactctatcaaaggacctgatggctgtagcaggtgatgctttgaagaccaatatcaccacattggggcctcttgttcttccaatgtccgagcagctgcttttctttgctacattggtgggtaggaaactcttcaagatgaagatcaaaccttacatcccagatttcagacttgcttttgagcatttctgcattcatgctggaggaagagccgtcttggatgaattagagaagaacctgcatctatctgattggcatatggagccatcaaggatgacactttaccgatttggaaacacctcaagcagttctctctggtatgagttggcttacacagaagcaaagggaaggatcaagaaaggagatagaacatggcagatagcttttgggtcgggattcaagtgtaatagtgctgtgtggaaagctctcaagagcatagatcctgcaaaggaaaagagcccatggatggctgaaattgatcagttcccagtcgatgttccaagggtgtcaaccttctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

515

Amino Acids

58.01

Weight (kDa)

9.16

Isoelectric Point (pI)

41.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26640
fragaria_vesca	FvH4_1g04020 FvH4_2g29750 FvH4_2g29750
malus_domestica	MD00G1025800.v1.1 MD15G1118900.v1.1 MD15G1178600.v1.1
prunus_persica	Prupe.1G472100_v2.0.a1 Prupe.1G472100_v2.0.a1 Prupe.7G236700_v2.0.a1
pyrus_communis	pycom15g10700 pycom15g16040
rosa_chinensis	RchiOBHm_Chr2g0089491 RchiOBHm_Chr6g0298771
rosa_laevigata	RLG00000011487 RLG00000016035
rosa_multiflora	Rmu_co8400115.1_g000001 Rmu_sc0000197.1_g000003 Rmu_ssc0000397.1_g000013
rosa_roxburghii	Rroxscaffold_2G00151880 Rroxscaffold_7G00169350
rosa_rugosa	Rorug02G0001200 Rorug06G0282800 Rorug06G0282900
rosa_samantha	Rh2AG046500 Rh2BG045100 Rh2CG046900 Rh2DG046500 Rh6AG394300 Rh6BG402100 Rh6CG408000 Rh6DG394600
rosa_wichuraiana	Rw2G003610 Rw6G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1052
Acc36I	ACCTGC	3 cut(s)	722, 1052, 1275
AccB1I	GGYRCC	1 cut(s)	557
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	3 cut(s)	5, 304, 955
AclWI	GGATC	6 cut(s)	25, 436, 447, 449, 1388, 1463
AcuI	CTGAAG	1 cut(s)	752
AfaI	GTAC	5 cut(s)	143, 320, 406, 492, 830
AfiI	CCNNNNNNNGG	6 cut(s)	163, 247, 484, 936, 1095, 1495
AgeI	ACCGGT	1 cut(s)	936
AjnI	CCWGG	1 cut(s)	270
AleI	CACNNNNGTG	1 cut(s)	966
Alw26I	GTCTC	2 cut(s)	654, 740
AlwI	GGATC	6 cut(s)	25, 436, 447, 449, 1388, 1463
AlwNI	CAGNNNCTG	1 cut(s)	488
AoxI	GGCC	2 cut(s)	457, 1097
ApeKI	GCWGC	5 cut(s)	176, 726, 887, 1123, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AsiGI	ACCGGT	1 cut(s)	936
Asp700I	GAANNNNTTC	1 cut(s)	1160
AspLEI	GCGC	2 cut(s)	731, 793
AspS9I	GGNCC	3 cut(s)	927, 1045, 1097
AsuHPI	GGTGA	4 cut(s)	121, 262, 1076, 1078
AvaII	GGWCC	2 cut(s)	927, 1045
BamHI	GGATCC	1 cut(s)	441
BanI	GGYRCC	1 cut(s)	557
BanII	GRGCYC	1 cut(s)	1490
BarI	GAAGNNNNNNTAC	2 cut(s)	98, 130
BauI	CACGAG	1 cut(s)	161
BbsI	GAAGAC	1 cut(s)	1082
BbvCI	CCTCAGC	1 cut(s)	540
BbvI	GCAGC	5 cut(s)	163, 738, 874, 1113, 1135
BccI	CCATC	5 cut(s)	46, 871, 1045, 1303, 1489
BceAI	ACGGC	1 cut(s)	1226
BcgI	CGANNNNNNTGC	2 cut(s)	557, 591
BciT130I	CCWGG	1 cut(s)	272
BclI	TGATCA	1 cut(s)	1507
BcoDI	GTCTC	2 cut(s)	654, 740
BfmI	CTRYAG	3 cut(s)	425, 625, 1056
BfuAI	ACCTGC	3 cut(s)	722, 1052, 1275
BglII	AGATCT	2 cut(s)	205, 375
BisI	GCNGC	5 cut(s)	177, 727, 888, 1124, 1127
BlsI	GCNGC	5 cut(s)	178, 728, 889, 1125, 1128
Bme1390I	CCNGG	1 cut(s)	272
Bme18I	GGWCC	2 cut(s)	927, 1045
BmgT120I	GGNCC	3 cut(s)	927, 1045, 1097
BmiI	GGNNCC	6 cut(s)	9, 65, 443, 559, 1098, 1293
BmrFI	CCNGG	1 cut(s)	272
BmrI	ACTGGG	1 cut(s)	1511
BmsI	GCATC	6 cut(s)	235, 713, 784, 1003, 1057, 1279
BmuI	ACTGGG	1 cut(s)	1511
BpiI	GAAGAC	1 cut(s)	1082
BpmI	CTGGAG	1 cut(s)	1251
Bpu10I	CCTNAGC	1 cut(s)	540
BpuEI	CTTGAG	3 cut(s)	467, 1315, 1442
BsaBI	GATNNNNATC	1 cut(s)	1172
BsaI	GGTCTC	1 cut(s)	740
BsaJI	CCNNGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
BsaWI	WCCGGW	1 cut(s)	936
Bsc4I	CCNNNNNNNGG	6 cut(s)	163, 247, 484, 936, 1095, 1495
Bse118I	RCCGGY	1 cut(s)	936
Bse1I	ACTGG	3 cut(s)	406, 830, 1517
Bse8I	GATNNNNATC	1 cut(s)	1172
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
BseGI	GGATG	8 cut(s)	53, 728, 775, 882, 1185, 1255, 1308, 1500
BseJI	GATNNNNATC	1 cut(s)	1172
BseLI	CCNNNNNNNGG	6 cut(s)	163, 247, 484, 936, 1095, 1495
BseMII	CTCAG	3 cut(s)	426, 531, 927
BseNI	ACTGG	3 cut(s)	406, 830, 1517
BseRI	GAGGAG	1 cut(s)	431
BseXI	GCAGC	5 cut(s)	163, 738, 874, 1113, 1135
BseYI	CCCAGC	1 cut(s)	1016
BshFI	GGCC	2 cut(s)	459, 1099
BshNI	GGYRCC	1 cut(s)	557
BshTI	ACCGGT	1 cut(s)	936
BsiSI	CCGG	2 cut(s)	456, 937
BslI	CCNNNNNNNGG	6 cut(s)	163, 247, 484, 936, 1095, 1495
BsmAI	GTCTC	2 cut(s)	654, 740
BsmBI	CGTCTC	1 cut(s)	654
BsmI	GAATGC	1 cut(s)	1221
BsnI	GGCC	2 cut(s)	459, 1099
Bso31I	GGTCTC	1 cut(s)	740
Bsp1286I	GDGCHC	1 cut(s)	1490
Bsp19I	CCATGG	3 cut(s)	133, 660, 1490
BspACI	CCGC	3 cut(s)	5, 304, 955
BspANI	GGCC	2 cut(s)	459, 1099
BspCNI	CTCAG	3 cut(s)	425, 532, 926
BspLI	GGNNCC	6 cut(s)	9, 65, 443, 559, 1098, 1293
BspMAI	CTGCAG	1 cut(s)	629
BspMI	ACCTGC	3 cut(s)	722, 1052, 1275
BspPI	GGATC	6 cut(s)	25, 436, 447, 449, 1388, 1463
BspQI	GCTCTTC	1 cut(s)	1231
BspT107I	GGYRCC	1 cut(s)	557
BspTNI	GGTCTC	1 cut(s)	740
BsrFI	RCCGGY	1 cut(s)	936
BsrI	ACTGG	3 cut(s)	406, 830, 1517
BssAI	RCCGGY	1 cut(s)	936
BssECI	CCNNGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
BssSI	CACGAG	1 cut(s)	161
BssT1I	CCWWGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
Bst2BI	CACGAG	1 cut(s)	161
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	4 cut(s)	289, 390, 429, 952
Bst6I	CTCTTC	2 cut(s)	1166, 1231
BstAPI	GCANNNNNTGC	1 cut(s)	1067
BstC8I	GCNNGC	1 cut(s)	959
BstDEI	CTNAG	4 cut(s)	393, 412, 540, 913
BstDSI	CCRYGG	3 cut(s)	133, 660, 1490
BstEII	GGTNACC	1 cut(s)	113
BstENI	CCTNNNNNAGG	1 cut(s)	482
BstF5I	GGATG	8 cut(s)	53, 728, 775, 882, 1185, 1255, 1308, 1500
BstHHI	GCGC	2 cut(s)	731, 793
BstMAI	GTCTC	2 cut(s)	654, 740
BstMWI	GCNNNNNNNGC	2 cut(s)	1067, 1291
BstNI	CCWGG	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	113
BstSCI	CCNGG	1 cut(s)	270
BstSFI	CTRYAG	3 cut(s)	425, 625, 1056
BstV1I	GCAGC	5 cut(s)	163, 738, 874, 1113, 1135
BstV2I	GAAGAC	1 cut(s)	1082
BstX2I	RGATCY	5 cut(s)	205, 375, 441, 452, 1468
BstYI	RGATCY	5 cut(s)	205, 375, 441, 452, 1468
BsuRI	GGCC	2 cut(s)	459, 1099
BtgI	CCRYGG	3 cut(s)	133, 660, 1490
BtsCI	GGATG	8 cut(s)	53, 728, 775, 882, 1185, 1255, 1308, 1500
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	2 cut(s)	285, 552
BveI	ACCTGC	3 cut(s)	722, 1052, 1275
Cac8I	GCNNGC	1 cut(s)	959
CaiI	CAGNNNCTG	1 cut(s)	488
CfoI	GCGC	2 cut(s)	731, 793
Cfr10I	RCCGGY	1 cut(s)	936
Cfr13I	GGNCC	3 cut(s)	927, 1045, 1097
Csp6I	GTAC	5 cut(s)	142, 319, 405, 491, 829
CspAI	ACCGGT	1 cut(s)	936
CspCI	CAANNNNNGTGG	2 cut(s)	694, 729
CviAII	CATG	6 cut(s)	134, 661, 805, 1226, 1401, 1491
CviQI	GTAC	5 cut(s)	142, 319, 405, 491, 829
DdeI	CTNAG	4 cut(s)	393, 412, 540, 913
Eam1104I	CTCTTC	2 cut(s)	1166, 1231
EarI	CTCTTC	2 cut(s)	1166, 1231
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
Eco24I	GRGCYC	1 cut(s)	1490
Eco31I	GGTCTC	1 cut(s)	740
Eco47I	GGWCC	2 cut(s)	927, 1045
Eco57I	CTGAAG	1 cut(s)	752
Eco91I	GGTNACC	1 cut(s)	113
EcoNI	CCTNNNNNAGG	1 cut(s)	482
EcoO109I	RGGNCCY	2 cut(s)	1045, 1097
EcoO65I	GGTNACC	1 cut(s)	113
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
EcoT38I	GRGCYC	1 cut(s)	1490
ErhI	CCWWGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
Esp3I	CGTCTC	1 cut(s)	654
FaeI	CATG	6 cut(s)	137, 664, 808, 1229, 1404, 1494
FatI	CATG	6 cut(s)	133, 660, 804, 1225, 1400, 1490
FauI	CCCGC	1 cut(s)	311
FauNDI	CATATG	1 cut(s)	1287
FbaI	TGATCA	1 cut(s)	1507
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	5 cut(s)	177, 727, 888, 1124, 1127
FokI	GGATG	8 cut(s)	40, 735, 762, 889, 1172, 1262, 1315, 1507
FriOI	GRGCYC	1 cut(s)	1490
Fsp4HI	GCNGC	5 cut(s)	177, 727, 888, 1124, 1127
GlaI	GCGC	2 cut(s)	730, 792
GluI	GCNGC	5 cut(s)	177, 727, 888, 1124, 1127
GsaI	CCCAGC	1 cut(s)	1020
GsuI	CTGGAG	1 cut(s)	1251
HaeIII	GGCC	2 cut(s)	459, 1099
HapII	CCGG	2 cut(s)	456, 937
HhaI	GCGC	2 cut(s)	731, 793
Hin1II	CATG	6 cut(s)	137, 664, 808, 1229, 1404, 1494
Hin6I	GCGC	2 cut(s)	729, 791
HinP1I	GCGC	2 cut(s)	729, 791
HincII	GTYRAC	3 cut(s)	328, 622, 1539
HindII	GTYRAC	3 cut(s)	328, 622, 1539
HindIII	AAGCTT	3 cut(s)	107, 761, 851
HinfI	GANTC	3 cut(s)	421, 467, 1425
HpaI	GTTAAC	1 cut(s)	328
HpaII	CCGG	2 cut(s)	456, 937
HphI	GGTGA	4 cut(s)	121, 262, 1076, 1078
Hpy166II	GTNNAC	5 cut(s)	292, 319, 328, 622, 1539
Hpy188I	TCNGA	7 cut(s)	63, 415, 876, 916, 1120, 1199, 1279
Hpy188III	TCNNGA	6 cut(s)	433, 482, 1165, 1384, 1422, 1459
Hpy8I	GTNNAC	5 cut(s)	292, 319, 328, 622, 1539
HpyAV	CCTTC	4 cut(s)	432, 488, 918, 1371
HpyCH4III	ACNGT	4 cut(s)	289, 390, 429, 952
HpyCH4V	TGCA	7 cut(s)	366, 627, 726, 775, 1221, 1270, 1475
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1067, 1291
HpyF3I	CTNAG	4 cut(s)	393, 412, 540, 913
Hsp92II	CATG	6 cut(s)	137, 664, 808, 1229, 1404, 1494
HspAI	GCGC	2 cut(s)	729, 791
Ksp22I	TGATCA	1 cut(s)	1507
KspAI	GTTAAC	1 cut(s)	328
LguI	GCTCTTC	1 cut(s)	1231
LmnI	GCTCC	4 cut(s)	7, 204, 223, 1291
Lsp1109I	GCAGC	5 cut(s)	163, 738, 874, 1113, 1135
LweI	GCATC	6 cut(s)	235, 713, 784, 1003, 1057, 1279
MaeIII	GTNAC	4 cut(s)	113, 338, 994, 1030
MfeI	CAATTG	1 cut(s)	744
MflI	RGATCY	5 cut(s)	205, 375, 441, 452, 1468
MhlI	GDGCHC	1 cut(s)	1490
MluCI	AATT	4 cut(s)	744, 862, 1253, 1503
MmeI	TCCRAC	1 cut(s)	665
MroXI	GAANNNNTTC	1 cut(s)	1160
MseI	TTAA	2 cut(s)	90, 327
MslI	CAYNNNNRTG	1 cut(s)	966
MspA1I	CMGCKG	1 cut(s)	1126
MspI	CCGG	2 cut(s)	456, 937
MspR9I	CCNGG	1 cut(s)	272
MunI	CAATTG	1 cut(s)	744
Mva1269I	GAATGC	1 cut(s)	1221
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	2 cut(s)	1067, 1291
NcoI	CCATGG	3 cut(s)	133, 660, 1490
NdeI	CATATG	1 cut(s)	1287
NlaIII	CATG	6 cut(s)	137, 664, 808, 1229, 1404, 1494
NlaIV	GGNNCC	6 cut(s)	9, 65, 443, 559, 1098, 1293
OliI	CACNNNNGTG	1 cut(s)	966
PaqCI	CACCTGC	1 cut(s)	1052
PciSI	GCTCTTC	1 cut(s)	1231
PctI	GAATGC	1 cut(s)	1221
PdmI	GAANNNNTTC	1 cut(s)	1160
PfeI	GAWTC	3 cut(s)	421, 467, 1425
PinAI	ACCGGT	1 cut(s)	936
PkrI	GCNGC	5 cut(s)	178, 728, 889, 1125, 1128
PpuMI	RGGWCCY	1 cut(s)	1045
Psp5II	RGGWCCY	1 cut(s)	1045
Psp6I	CCWGG	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	113
PspFI	CCCAGC	1 cut(s)	1016
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	6 cut(s)	9, 65, 443, 559, 1098, 1293
PspPI	GGNCC	3 cut(s)	927, 1045, 1097
PspPPI	RGGWCCY	1 cut(s)	1045
PstI	CTGCAG	1 cut(s)	629
PstNI	CAGNNNCTG	1 cut(s)	488
PsuI	RGATCY	5 cut(s)	205, 375, 441, 452, 1468
PvuII	CAGCTG	1 cut(s)	1126
RsaI	GTAC	5 cut(s)	143, 320, 406, 492, 830
RsaNI	GTAC	5 cut(s)	142, 319, 405, 491, 829
RseI	CAYNNNNRTG	1 cut(s)	966
SapI	GCTCTTC	1 cut(s)	1231
SaqAI	TTAA	2 cut(s)	90, 327
SatI	GCNGC	5 cut(s)	177, 727, 888, 1124, 1127
Sau96I	GGNCC	3 cut(s)	927, 1045, 1097
ScrFI	CCNGG	1 cut(s)	272
SduI	GDGCHC	1 cut(s)	1490
SfaNI	GCATC	6 cut(s)	235, 713, 784, 1003, 1057, 1279
SfcI	CTRYAG	3 cut(s)	425, 625, 1056
SinI	GGWCC	2 cut(s)	927, 1045
SmiMI	CAYNNNNRTG	1 cut(s)	966
SmlI	CTYRAG	3 cut(s)	446, 1330, 1457
SmoI	CTYRAG	3 cut(s)	446, 1330, 1457
Sse9I	AATT	4 cut(s)	744, 862, 1253, 1503
SsiI	CCGC	3 cut(s)	5, 304, 955
SspI	AATATT	1 cut(s)	612
StyD4I	CCNGG	1 cut(s)	270
StyI	CCWWGG	6 cut(s)	133, 460, 597, 660, 1490, 1529
TaaI	ACNGT	4 cut(s)	289, 390, 429, 952
TaqI	TCGA	4 cut(s)	263, 358, 685, 1521
TasI	AATT	4 cut(s)	744, 862, 1253, 1503
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	3 cut(s)	421, 467, 1425
Tru1I	TTAA	2 cut(s)	90, 327
Tru9I	TTAA	2 cut(s)	90, 327
TscAI	CASTG	2 cut(s)	292, 552
TseI	GCWGC	5 cut(s)	176, 726, 887, 1123, 1126
TspDTI	ATGAA	4 cut(s)	533, 1184, 1214, 1266
TspGWI	ACGGA	2 cut(s)	501, 636
TspRI	CASTG	2 cut(s)	292, 552
VpaK11BI	GGWCC	2 cut(s)	927, 1045
XagI	CCTNNNNNAGG	1 cut(s)	482
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XmiI	GTMKAC	1 cut(s)	291
XmnI	GAANNNNTTC	1 cut(s)	1160

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.