FvH4_2g29750

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0003748
Physical Location & Seq
Reverse (-)
23015501 .. 23018246
2746 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g29750.t1

Sequence Viewer

Length: 1539 bp
ATGTCAGGGTCCAATCTAAACAAATCTTTGATATCTCCATCATTATCATCACCTAAGCTCCCTGACTTCAAACAATCTGTGAAATTGAAGTATGTAAAGCTTGGCTACCATTACCTCATAACTCATGGAATGTACTTGTTCCTAACCCCTCTTTTTGTTCTCACTGCTGCACAAGTCTCCACATTCTCACTCCAAGACCTCCATGACCTTTGGGATCATTTGAGGTTCAATCTCATATCTGTTGTCCTTTGCTCAACTCTCTTGGTCTTCTTGTCCACCCTTTACTTCCTCACTCGTCCCCGTCCTGTTTACCTTGTTGATTTCTCATGCTACAAGCCTGAAGATGCTCAAAAAACCACTAGGCAAGTGTTCATGAAATGCTCACATTCGATAGGGACATTCACTGGGGAGAATCTTGAGTTTCAGCGCAAAATTCTTGAGAGGTCAGGTCTTGGGGAGTCTACATACCTCCCTGAAGCTGTTATAAGGGTGCCTCCTAATCCATGTATGGCAGAGGCAAGAAAAGAAGCTGAAATGGTAATGTATGGTGCCCTTGATCAGCTGTTTGAGAAAACTTCTATAAAACCGAAGGACATTGGTATTTTGGTTGTGAATTGTAGCTTGTTCAATCCAACACCGTCTTTGTCAGCTATGTTGATCAATCATTATAAGCTAAGAGGGAATATTATTAGTTACAATCTTGGTGGGATGGGATGCAGTGCTGGTTTGATCTCGATTGATCTTGCGAAAGATCTCCTTCAAGTCCACCCGAACACCTATGCTTTGGTGATTAGTATGGAGAATATCACTTTGAATTGGTATTTTGGGAATGACAGATCAATGCTGGTGTCAAACTGCTTGTTTAGAATGGGGGGAGCTGCAATGTTGCTTTCGAACAATAGGCATGACAGGTGTCGTTCCAAGTACCAGTTAGTCCATACTGTTCGAACACATAAAGGTGCTGATGACAAGTGCTTCTCTTGTGTAACTCAAAAAGAGGATCCTGCAGGGAAAATTGGAGTTTCTTTGTCAAAGGATCTTATGGCAGTAGCTGGGGATGCTTTGAAGACCAACATTACAACTTTGGGTCCTTTGGTGTTACCTATGTCAGAACAGTTGCTCTTCTTTGCTACACTTGTTGGGAGAAAGCTTTTCAAGATGAAGGTGAAGCCCTACATCCCAGATTTCAAATTGGCTTTTGAGCATTTCTGCATTCATGCTGGTGGAAGAGCTGTGCTGGATGAATTGGAGAAGAACTTGCAGCTTTTGGACAGACATATGGAGCCTTCAAGGATGACCCTTTACAGATTTGGCAACACTTCAAGCAGCTCTCTTTGGTATGAACTGGCTTATACAGAAGCCAAGGGGAGGATGAAGAAAGGTGACAGAACATGGCAGATAGCGTTCGGGTCTGGCTTCAAGTGTAACAGCGCGGTTTGGAAGGCTTTGAGGACTGTGAATCCAGTGAAGGAAAAGAACCCGTGGATGGATGAGATCGACATGTTCCCTGTGGATGTTCCCAAGGTCTCATCCATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

513

Amino Acids

57.69

Weight (kDa)

9.16

Isoelectric Point (pI)

33.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 95 - 384 3.3e-144 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 401 - 481 2.4e-09 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Chal_sti_synt_C PF02797 403 - 479 6.1e-09 Chalcone and stilbene synthases, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 485, 669
AccB1I GGYRCC 2 cut(s) 490, 548
AccI GTMKAC 1 cut(s) 461
AccII CGCG 1 cut(s) 1433
AciI CCGC 1 cut(s) 1433
AclWI GGATC 4 cut(s) 222, 995, 1008, 1044
AcsI RAATTY 1 cut(s) 432
AcuI CTGAAG 2 cut(s) 360, 495
AfaI GTAC 2 cut(s) 134, 926
AfiI CCNNNNNNNGG 2 cut(s) 1368, 1486
AflIII ACRYGT 1 cut(s) 1500
Alw26I GTCTC 2 cut(s) 181, 1531
AlwI GGATC 4 cut(s) 222, 995, 1008, 1044
AlwNI CAGNNNCTG 1 cut(s) 1052
ApeKI GCWGC 4 cut(s) 167, 878, 1261, 1326
ApoI RAATTY 1 cut(s) 432
AspLEI GCGC 2 cut(s) 429, 1433
AspS9I GGNCC 2 cut(s) 9, 1088
AsuHPI GGTGA 4 cut(s) 42, 799, 1177, 1394
AsuII TTCGAA 2 cut(s) 893, 946
AvaII GGWCC 2 cut(s) 9, 1088
BaeGI GKGCMC 1 cut(s) 553
BamHI GGATCC 1 cut(s) 1000
BanI GGYRCC 2 cut(s) 490, 548
BbsI GAAGAC 2 cut(s) 259, 1073
BbvI GCAGC 4 cut(s) 154, 865, 1273, 1338
BccI CCATC 3 cut(s) 46, 703, 1480
BclI TGATCA 2 cut(s) 556, 657
BcoDI GTCTC 2 cut(s) 181, 1531
BfaI CTAG 1 cut(s) 360
BfmI CTRYAG 1 cut(s) 1005
BglII AGATCT 1 cut(s) 751
BisI GCNGC 4 cut(s) 168, 879, 1262, 1327
BlsI GCNGC 4 cut(s) 169, 880, 1263, 1328
Bme18I GGWCC 2 cut(s) 9, 1088
BmgT120I GGNCC 2 cut(s) 9, 1088
BmiI GGNNCC 6 cut(s) 10, 492, 550, 1002, 1089, 1284
BmrI ACTGGG 1 cut(s) 414
BmsI GCATC 3 cut(s) 334, 704, 1048
BmuI ACTGGG 1 cut(s) 414
BoxI GACNNNNGTC 1 cut(s) 912
BpiI GAAGAC 2 cut(s) 259, 1073
Bpu10I CCTNAGC 1 cut(s) 54
Bpu14I TTCGAA 2 cut(s) 893, 946
BpuEI CTTGAG 2 cut(s) 437, 458
BsaI GGTCTC 1 cut(s) 1531
BsaJI CCNNGG 3 cut(s) 1362, 1481, 1521
BsaXI ACNNNNNCTCC 2 cut(s) 42, 72
Bsc4I CCNNNNNNNGG 2 cut(s) 1368, 1486
Bse1I ACTGG 4 cut(s) 409, 928, 1350, 1463
Bse3DI GCAATG 1 cut(s) 888
BseDI CCNNGG 3 cut(s) 1362, 1481, 1521
BseLI CCNNNNNNNGG 2 cut(s) 1368, 1486
BseMI GCAATG 1 cut(s) 888
BseNI ACTGG 4 cut(s) 409, 928, 1350, 1463
BseSI GKGCMC 1 cut(s) 553
BseXI GCAGC 4 cut(s) 154, 865, 1273, 1338
BseYI CCCAGC 1 cut(s) 1052
BsgI GTGCAG 1 cut(s) 153
Bsh1236I CGCG 1 cut(s) 1433
BshNI GGYRCC 2 cut(s) 490, 548
BslFI GGGAC 2 cut(s) 282, 409
BslI CCNNNNNNNGG 2 cut(s) 1368, 1486
BsmAI GTCTC 2 cut(s) 181, 1531
BsmFI GGGAC 2 cut(s) 282, 409
BsmI GAATGC 1 cut(s) 1212
Bso31I GGTCTC 1 cut(s) 1531
Bsp119I TTCGAA 2 cut(s) 893, 946
Bsp1286I GDGCHC 1 cut(s) 553
BspACI CCGC 1 cut(s) 1433
BspFNI CGCG 1 cut(s) 1433
BspHI TCATGA 1 cut(s) 372
BspLI GGNNCC 6 cut(s) 10, 492, 550, 1002, 1089, 1284
BspMAI CTGCAG 1 cut(s) 1009
BspPI GGATC 4 cut(s) 222, 995, 1008, 1044
BspQI GCTCTTC 2 cut(s) 1127, 1222
BspT104I TTCGAA 2 cut(s) 893, 946
BspT107I GGYRCC 2 cut(s) 490, 548
BspTNI GGTCTC 1 cut(s) 1531
BsrDI GCAATG 1 cut(s) 888
BsrI ACTGG 4 cut(s) 409, 928, 1350, 1463
BssECI CCNNGG 3 cut(s) 1362, 1481, 1521
BssT1I CCWWGG 2 cut(s) 1362, 1521
Bst4CI ACNGT 4 cut(s) 639, 943, 1116, 1456
Bst6I CTCTTC 2 cut(s) 1127, 1222
BstBI TTCGAA 2 cut(s) 893, 946
BstDEI CTNAG 2 cut(s) 54, 674
BstDSI CCRYGG 1 cut(s) 1481
BstFNI CGCG 1 cut(s) 1433
BstHHI GCGC 2 cut(s) 429, 1433
BstMAI GTCTC 2 cut(s) 181, 1531
BstMWI GCNNNNNNNGC 1 cut(s) 1058
BstNSI RCATGY 1 cut(s) 1504
BstPAI GACNNNNGTC 1 cut(s) 912
BstSFI CTRYAG 1 cut(s) 1005
BstSLI GKGCMC 1 cut(s) 553
BstUI CGCG 1 cut(s) 1433
BstV1I GCAGC 4 cut(s) 154, 865, 1273, 1338
BstV2I GAAGAC 2 cut(s) 259, 1073
BstX2I RGATCY 3 cut(s) 751, 1000, 1036
BstYI RGATCY 3 cut(s) 751, 1000, 1036
BtgI CCRYGG 1 cut(s) 1481
BtsI GCAGTG 2 cut(s) 162, 724
BtsIMutI CAGTG 4 cut(s) 162, 402, 724, 1470
CaiI CAGNNNCTG 1 cut(s) 1052
CciI TCATGA 1 cut(s) 372
CfoI GCGC 2 cut(s) 429, 1433
Cfr13I GGNCC 2 cut(s) 9, 1088
Csp6I GTAC 2 cut(s) 133, 925
CspCI CAANNNNNGTGG 2 cut(s) 685, 720
CviAII CATG 9 cut(s) 125, 203, 327, 373, 504, 905, 1217, 1392, 1501
CviQI GTAC 2 cut(s) 133, 925
DdeI CTNAG 2 cut(s) 54, 674
Eam1104I CTCTTC 2 cut(s) 1127, 1222
EarI CTCTTC 2 cut(s) 1127, 1222
Eco130I CCWWGG 2 cut(s) 1362, 1521
Eco31I GGTCTC 1 cut(s) 1531
Eco32I GATATC 1 cut(s) 33
Eco47I GGWCC 2 cut(s) 9, 1088
Eco57I CTGAAG 2 cut(s) 360, 495
EcoO109I RGGNCCY 1 cut(s) 1088
EcoRV GATATC 1 cut(s) 33
EcoT14I CCWWGG 2 cut(s) 1362, 1521
ErhI CCWWGG 2 cut(s) 1362, 1521
FaeI CATG 9 cut(s) 128, 206, 330, 376, 507, 908, 1220, 1395, 1504
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 2 cut(s) 282, 409
FatI CATG 9 cut(s) 124, 202, 326, 372, 503, 904, 1216, 1391, 1500
FauNDI CATATG 1 cut(s) 1278
FbaI TGATCA 2 cut(s) 556, 657
FblI GTMKAC 1 cut(s) 461
Fnu4HI GCNGC 4 cut(s) 168, 879, 1262, 1327
Fsp4HI GCNGC 4 cut(s) 168, 879, 1262, 1327
FspBI CTAG 1 cut(s) 360
GlaI GCGC 2 cut(s) 428, 1432
GluI GCNGC 4 cut(s) 168, 879, 1262, 1327
GsaI CCCAGC 1 cut(s) 1056
HhaI GCGC 2 cut(s) 429, 1433
Hin1II CATG 9 cut(s) 128, 206, 330, 376, 507, 908, 1220, 1395, 1504
Hin6I GCGC 2 cut(s) 427, 1431
HinP1I GCGC 2 cut(s) 427, 1431
HindIII AAGCTT 2 cut(s) 98, 1148
HinfI GANTC 3 cut(s) 412, 458, 1459
HphI GGTGA 4 cut(s) 42, 799, 1177, 1394
Hpy166II GTNNAC 4 cut(s) 276, 310, 462, 766
Hpy188I TCNGA 2 cut(s) 1111, 1538
Hpy188III TCNNGA 5 cut(s) 373, 416, 437, 733, 1156
Hpy8I GTNNAC 4 cut(s) 276, 310, 462, 766
HpyAV CCTTC 6 cut(s) 583, 767, 1156, 1296, 1435, 1462
HpyCH4III ACNGT 4 cut(s) 639, 943, 1116, 1456
HpyCH4V TGCA 6 cut(s) 170, 717, 881, 1007, 1212, 1261
HpyF10VI GCNNNNNNNGC 1 cut(s) 1058
HpyF3I CTNAG 2 cut(s) 54, 674
Hsp92II CATG 9 cut(s) 128, 206, 330, 376, 507, 908, 1220, 1395, 1504
HspAI GCGC 2 cut(s) 427, 1431
Ksp22I TGATCA 2 cut(s) 556, 657
LguI GCTCTTC 2 cut(s) 1127, 1222
LmnI GCTCC 3 cut(s) 63, 875, 1282
Lsp1109I GCAGC 4 cut(s) 154, 865, 1273, 1338
LweI GCATC 3 cut(s) 334, 704, 1048
MaeI CTAG 1 cut(s) 360
MaeIII GTNAC 5 cut(s) 692, 985, 1098, 1382, 1424
MboII GAAGA 7 cut(s) 259, 353, 1078, 1114, 1239, 1264, 1387
MflI RGATCY 3 cut(s) 751, 1000, 1036
MhlI GDGCHC 1 cut(s) 553
MluCI AATT 7 cut(s) 83, 432, 613, 814, 1014, 1190, 1244
MlyI GAGTC 1 cut(s) 467
MmeI TCCRAC 1 cut(s) 656
MslI CAYNNNNRTG 2 cut(s) 957, 1221
MspA1I CMGCKG 1 cut(s) 562
Mva1269I GAATGC 1 cut(s) 1212
MvnI CGCG 1 cut(s) 1433
MwoI GCNNNNNNNGC 1 cut(s) 1058
NdeI CATATG 1 cut(s) 1278
NlaIII CATG 9 cut(s) 128, 206, 330, 376, 507, 908, 1220, 1395, 1504
NlaIV GGNNCC 6 cut(s) 10, 492, 550, 1002, 1089, 1284
NmuCI GTSAC 1 cut(s) 1382
NspI RCATGY 1 cut(s) 1504
NspV TTCGAA 2 cut(s) 893, 946
PagI TCATGA 1 cut(s) 372
PciI ACATGT 1 cut(s) 1500
PciSI GCTCTTC 2 cut(s) 1127, 1222
PctI GAATGC 1 cut(s) 1212
PfeI GAWTC 2 cut(s) 412, 1459
PkrI GCNGC 4 cut(s) 169, 880, 1263, 1328
PleI GAGTC 1 cut(s) 466
PpsI GAGTC 1 cut(s) 466
PpuMI RGGWCCY 1 cut(s) 1088
PscI ACATGT 1 cut(s) 1500
PshAI GACNNNNGTC 1 cut(s) 912
PsiI TTATAA 2 cut(s) 485, 669
Psp5II RGGWCCY 1 cut(s) 1088
PspFI CCCAGC 1 cut(s) 1052
PspN4I GGNNCC 6 cut(s) 10, 492, 550, 1002, 1089, 1284
PspPI GGNCC 2 cut(s) 9, 1088
PspPPI RGGWCCY 1 cut(s) 1088
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 1 cut(s) 1052
PsuI RGATCY 3 cut(s) 751, 1000, 1036
PvuII CAGCTG 1 cut(s) 562
RsaI GTAC 2 cut(s) 134, 926
RsaNI GTAC 2 cut(s) 133, 925
RseI CAYNNNNRTG 2 cut(s) 957, 1221
SapI GCTCTTC 2 cut(s) 1127, 1222
SatI GCNGC 4 cut(s) 168, 879, 1262, 1327
Sau96I GGNCC 2 cut(s) 9, 1088
SbfI CCTGCAGG 1 cut(s) 1009
SchI GAGTC 1 cut(s) 467
SdaI CCTGCAGG 1 cut(s) 1009
SduI GDGCHC 1 cut(s) 553
SfaNI GCATC 3 cut(s) 334, 704, 1048
SfcI CTRYAG 1 cut(s) 1005
SfuI TTCGAA 2 cut(s) 893, 946
SinI GGWCC 2 cut(s) 9, 1088
SmiMI CAYNNNNRTG 2 cut(s) 957, 1221
SmlI CTYRAG 2 cut(s) 416, 437
SmoI CTYRAG 2 cut(s) 416, 437
Sse8387I CCTGCAGG 1 cut(s) 1009
Sse9I AATT 7 cut(s) 83, 432, 613, 814, 1014, 1190, 1244
SsiI CCGC 1 cut(s) 1433
SspI AATATT 1 cut(s) 685
SspMI CTAG 1 cut(s) 360
StyI CCWWGG 2 cut(s) 1362, 1521
TaaI ACNGT 4 cut(s) 639, 943, 1116, 1456
TaqI TCGA 5 cut(s) 389, 734, 893, 946, 1497
TasI AATT 7 cut(s) 83, 432, 613, 814, 1014, 1190, 1244
TatI WGTACW 1 cut(s) 132
TfiI GAWTC 2 cut(s) 412, 1459
TscAI CASTG 4 cut(s) 169, 409, 724, 1470
TseFI GTSAC 1 cut(s) 1382
TseI GCWGC 4 cut(s) 167, 878, 1261, 1326
Tsp45I GTSAC 1 cut(s) 1382
TspDTI ATGAA 7 cut(s) 361, 389, 1175, 1205, 1257, 1356, 1388
TspRI CASTG 4 cut(s) 169, 409, 724, 1470
VpaK11BI GGWCC 2 cut(s) 9, 1088
XapI RAATTY 1 cut(s) 432
XceI RCATGY 1 cut(s) 1504
XmiI GTMKAC 1 cut(s) 461
XspI CTAG 1 cut(s) 360
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.