Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0003748

Physical Location & Seq

Genomic Coordinates Forward (+)

39267904 .. 39270793

Gene Structure 2890 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G472100.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1548 bp

ATGTCAGCTTCCAATTTAAGGACTCCTTTAAACCCTCCATCATCAGTATCCCCATCCTCATTGAAGCTTCCTGATTTCAAACAATCTGTGAAGCTGAAGTATGTGAAGCTTGGCTACCATTACCTCATCACCCATGGGATGTACCTGTTCCTATCCCCTCTATTTGTTCTCACTGTGGCACAGCTCTCTACATTTTCACTCCAAGATCTCCATGACCTTTGGGACCATCTCAGGTTCAATCTCATATCTGTTGTCCTTTGCTCAACTCTTTTGGTCTTCTTATTGACCCTTTATTTCCTTACTCGTCCACGCCCCGTTTACCTTGTTGATTTCTCATGCTATAAGCCGGAGGATGCCCGAAAATGCCCGAGACAAATATTCATGGATAGGTCTCATTTTATAGGAACATTCACTGGGGAGAACCTCGAGTTTCAACGAAAAATTCTTGAGAGATCAGGTCTTGGGGAGTCAACCTACCTCCCTGAAGCTGTTATACAGGTTCCTCCTAATCCATGTATGGCAGAGGCCAGAAAAGAAGCTGAGATGGTAATGTTTGGTGCCCTTGATCAGCTCTTTGAGAAAACTTCTATAAAACCAAAAGACATTGGTATTCTGATTGTAAATTGTAGCTTGTTTAATCCAACACCATCTTTGTCAGCTATGGTTATCAATCATTATAAGCTACGAGGGAATATTATTAGTTATAATCTTGGTGGGATGGGATGTAGTGCTGGCTTGATCTCGATTGATCTTGCTAAAGATCTTCTTCGAGTCCACCCCAATACCTATGCTTTGGTCATTAGCATGGAAAACATCACTTTGAATTGGTATTTTGGGAATGATAGATCAATGCTTGTTTCAAACTGCTTGTTTAGAATGGGAGGAGCTGCAATATTGCTTTCAAACAATGGGTCTGACAGACGTCGATCCAAGTACCAACTGGTTCATACTGTTCGAACCCACAAAGGTGCCGATGACAAGTGCTTCTCATGTGTAACCCAAAAAGAGGATTTTGCAGGTAAAATTGGAGTTTCTCTGTCGAAAGATCTTATGGCAGTTGCTGGAGATGCTTTGAAGACCAACATCACTACCTTGGGTCCTCTTGTGTTACCTATGTCTGAACAGTTGCTCTTCTTTGCCACACTTGTTGGGAGAAAGCTTTTCAAGATGAAGGTGAAGCCTTACATCCCTGATTTTAAATTAGCTTTTGAACATTTCTGCATTCATGCCGGAGGAAGAGCTGTGCTGGATGAATTGGAGAAGAACTTGCAGCTTTCGGATCGCCACATGGAGCCGTCAAGGATGACACTTTACAGATTTGGCAACACTTCAAGCAGCTCTCTTTGGTATGAATTGGCTTATACAGAAGCCAAGGGGAGGATGAAAAAGGGAGACAGAACTTGGCAGATTGCGTTCGGGTCTGGCTTCAAGTGCAACAGTGCAGTTTGGAAGGCTTTGAGAACTGTGAATCCAGCAAAAGAGAAGAATCCATGGATGGATGAGATCCATCAGTTCCCAGTGGATGTTCCAAAGGTCTCAGCCCTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0006950 GO:0008150 GO:0009266 GO:0009314 GO:0009409 GO:0009416 GO:0009628 GO:0050896

KEGG Pathways

Metabolic & Signaling

ko00062 ko01110 map00062 map01110

Pfam Domains

Protein Families

ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

516

Amino Acids

58.08

Weight (kDa)

9.25

Isoelectric Point (pI)

35.95

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003748)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26640
fragaria_vesca	FvH4_1g04020 FvH4_2g29750 FvH4_2g29750
malus_domestica	MD00G1025800.v1.1 MD15G1118900.v1.1 MD15G1178600.v1.1
prunus_persica	Prupe.1G472100_v2.0.a1 Prupe.1G472100_v2.0.a1 Prupe.7G236700_v2.0.a1
pyrus_communis	pycom15g10700 pycom15g16040
rosa_chinensis	RchiOBHm_Chr2g0089491 RchiOBHm_Chr6g0298771
rosa_laevigata	RLG00000011487 RLG00000016035
rosa_multiflora	Rmu_co8400115.1_g000001 Rmu_sc0000197.1_g000003 Rmu_ssc0000397.1_g000013
rosa_roxburghii	Rroxscaffold_2G00151880 Rroxscaffold_7G00169350
rosa_rugosa	Rorug02G0001200 Rorug06G0282800 Rorug06G0282900
rosa_samantha	Rh2AG046500 Rh2BG045100 Rh2CG046900 Rh2DG046500 Rh6AG394300 Rh6BG402100 Rh6CG408000 Rh6DG394600
rosa_wichuraiana	Rw2G003610 Rw6G034490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	678, 705
AatII	GACGTC	1 cut(s)	925
Acc36I	ACCTGC	1 cut(s)	1007
AccB1I	GGYRCC	2 cut(s)	557, 968
AclWI	GGATC	3 cut(s)	921, 1287, 1498
AcsI	RAATTY	1 cut(s)	441
AcuI	CTGAAG	2 cut(s)	116, 504
AcyI	GRCGYC	1 cut(s)	922
AfaI	GTAC	2 cut(s)	143, 935
AfiI	CCNNNNNNNGG	3 cut(s)	18, 1006, 1377
AleI	CACNNNNGTG	1 cut(s)	966
AloI	GAACNNNNNNTCC	2 cut(s)	1453, 1485
Alw26I	GTCTC	4 cut(s)	364, 396, 1386, 1540
AlwI	GGATC	3 cut(s)	921, 1287, 1498
AlwNI	CAGNNNCTG	1 cut(s)	1061
Ama87I	CYCGRG	2 cut(s)	367, 425
AoxI	GGCC	1 cut(s)	525
ApeKI	GCWGC	3 cut(s)	887, 1270, 1335
ApoI	RAATTY	1 cut(s)	441
ArsI	GACNNNNNNTTYG	2 cut(s)	896, 928
AspS9I	GGNCC	2 cut(s)	223, 1097
AsuHPI	GGTGA	2 cut(s)	121, 1186
AsuII	TTCGAA	1 cut(s)	955
AvaI	CYCGRG	2 cut(s)	367, 425
AvaII	GGWCC	2 cut(s)	223, 1097
BaeGI	GKGCMC	1 cut(s)	562
BanI	GGYRCC	2 cut(s)	557, 968
BarI	GAAGNNNNNNTAC	4 cut(s)	98, 130, 477, 509
BbsI	GAAGAC	2 cut(s)	268, 1082
BbvI	GCAGC	3 cut(s)	874, 1282, 1347
BccI	CCATC	8 cut(s)	46, 61, 234, 538, 655, 712, 1489, 1515
BceAI	ACGGC	1 cut(s)	1279
BciVI	GTATCC	1 cut(s)	58
BclI	TGATCA	1 cut(s)	565
BcoDI	GTCTC	4 cut(s)	364, 396, 1386, 1540
BfuAI	ACCTGC	1 cut(s)	1007
BfuI	GTATCC	1 cut(s)	58
BglII	AGATCT	3 cut(s)	205, 760, 1045
BisI	GCNGC	3 cut(s)	888, 1271, 1336
BlsI	GCNGC	3 cut(s)	889, 1272, 1337
Bme18I	GGWCC	2 cut(s)	223, 1097
BmeT110I	CYCGRG	2 cut(s)	367, 425
BmgT120I	GGNCC	2 cut(s)	223, 1097
BmiI	GGNNCC	6 cut(s)	224, 501, 559, 970, 1098, 1293
BmrI	ACTGGG	2 cut(s)	423, 1511
BmsI	GCATC	2 cut(s)	343, 1057
BmuI	ACTGGG	2 cut(s)	423, 1511
BoxI	GACNNNNGTC	1 cut(s)	921
BpiI	GAAGAC	2 cut(s)	268, 1082
BpmI	CTGGAG	1 cut(s)	1083
Bpu14I	TTCGAA	1 cut(s)	955
BpuEI	CTTGAG	1 cut(s)	467
BsaHI	GRCGYC	1 cut(s)	922
BsaI	GGTCTC	2 cut(s)	396, 1540
BsaJI	CCNNGG	4 cut(s)	133, 1092, 1371, 1490
Bsc4I	CCNNNNNNNGG	3 cut(s)	18, 1006, 1377
Bse1I	ACTGG	3 cut(s)	418, 945, 1517
BseDI	CCNNGG	4 cut(s)	133, 1092, 1371, 1490
BseLI	CCNNNNNNNGG	3 cut(s)	18, 1006, 1377
BseMII	CTCAG	2 cut(s)	244, 531
BseNI	ACTGG	3 cut(s)	418, 945, 1517
BseRI	GAGGAG	1 cut(s)	897
BseSI	GKGCMC	1 cut(s)	562
BseXI	GCAGC	3 cut(s)	874, 1282, 1347
BsgI	GTGCAG	1 cut(s)	1461
BshFI	GGCC	1 cut(s)	527
BshNI	GGYRCC	2 cut(s)	557, 968
BsiHKCI	CYCGRG	2 cut(s)	367, 425
BsiSI	CCGG	2 cut(s)	347, 1230
BslFI	GGGAC	1 cut(s)	236
BslI	CCNNNNNNNGG	3 cut(s)	18, 1006, 1377
BsmAI	GTCTC	4 cut(s)	364, 396, 1386, 1540
BsmFI	GGGAC	1 cut(s)	236
BsmI	GAATGC	1 cut(s)	1221
BsnI	GGCC	1 cut(s)	527
Bso31I	GGTCTC	2 cut(s)	396, 1540
BsoBI	CYCGRG	2 cut(s)	367, 425
Bsp119I	TTCGAA	1 cut(s)	955
Bsp1286I	GDGCHC	1 cut(s)	562
Bsp19I	CCATGG	2 cut(s)	133, 1490
BspANI	GGCC	1 cut(s)	527
BspCNI	CTCAG	2 cut(s)	243, 532
BspLI	GGNNCC	6 cut(s)	224, 501, 559, 970, 1098, 1293
BspMI	ACCTGC	1 cut(s)	1007
BspPI	GGATC	3 cut(s)	921, 1287, 1498
BspQI	GCTCTTC	2 cut(s)	1136, 1231
BspT104I	TTCGAA	1 cut(s)	955
BspT107I	GGYRCC	2 cut(s)	557, 968
BspTNI	GGTCTC	2 cut(s)	396, 1540
BsrI	ACTGG	3 cut(s)	418, 945, 1517
BssECI	CCNNGG	4 cut(s)	133, 1092, 1371, 1490
BssNI	GRCGYC	1 cut(s)	922
BssT1I	CCWWGG	4 cut(s)	133, 1092, 1371, 1490
Bst4CI	ACNGT	5 cut(s)	175, 952, 1125, 1439, 1465
Bst6I	CTCTTC	2 cut(s)	1136, 1231
BstACI	GRCGYC	1 cut(s)	922
BstBI	TTCGAA	1 cut(s)	955
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	3 cut(s)	230, 540, 1537
BstDSI	CCRYGG	2 cut(s)	133, 1490
BstMAI	GTCTC	4 cut(s)	364, 396, 1386, 1540
BstMWI	GCNNNNNNNGC	2 cut(s)	1067, 1431
BstPAI	GACNNNNGTC	1 cut(s)	921
BstSLI	GKGCMC	1 cut(s)	562
BstV1I	GCAGC	3 cut(s)	874, 1282, 1347
BstV2I	GAAGAC	2 cut(s)	268, 1082
BstX2I	RGATCY	4 cut(s)	205, 760, 1045, 1503
BstYI	RGATCY	4 cut(s)	205, 760, 1045, 1503
BsuI	GTATCC	1 cut(s)	58
BsuRI	GGCC	1 cut(s)	527
BtgI	CCRYGG	2 cut(s)	133, 1490
BtsIMutI	CAGTG	4 cut(s)	171, 411, 1444, 1524
BveI	ACCTGC	1 cut(s)	1007
Cac8I	GCNNGC	1 cut(s)	733
CaiI	CAGNNNCTG	1 cut(s)	1061
Cfr13I	GGNCC	2 cut(s)	223, 1097
Csp6I	GTAC	2 cut(s)	142, 934
CspCI	CAANNNNNGTGG	2 cut(s)	1129, 1164
CviQI	GTAC	2 cut(s)	142, 934
DdeI	CTNAG	3 cut(s)	230, 540, 1537
DraI	TTTAAA	2 cut(s)	30, 1198
Eam1104I	CTCTTC	2 cut(s)	1136, 1231
EarI	CTCTTC	2 cut(s)	1136, 1231
Eco130I	CCWWGG	4 cut(s)	133, 1092, 1371, 1490
Eco31I	GGTCTC	2 cut(s)	396, 1540
Eco47I	GGWCC	2 cut(s)	223, 1097
Eco57I	CTGAAG	2 cut(s)	116, 504
Eco88I	CYCGRG	2 cut(s)	367, 425
EcoO109I	RGGNCCY	1 cut(s)	1097
EcoT14I	CCWWGG	4 cut(s)	133, 1092, 1371, 1490
ErhI	CCWWGG	4 cut(s)	133, 1092, 1371, 1490
FalI	AAGNNNNNCTT	4 cut(s)	10, 42, 750, 782
FaqI	GGGAC	1 cut(s)	236
FbaI	TGATCA	1 cut(s)	565
Fnu4HI	GCNGC	3 cut(s)	888, 1271, 1336
Fsp4HI	GCNGC	3 cut(s)	888, 1271, 1336
GluI	GCNGC	3 cut(s)	888, 1271, 1336
GsuI	CTGGAG	1 cut(s)	1083
HaeIII	GGCC	1 cut(s)	527
HapII	CCGG	2 cut(s)	347, 1230
Hin1I	GRCGYC	1 cut(s)	922
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HindIII	AAGCTT	3 cut(s)	65, 107, 1157
HinfI	GANTC	5 cut(s)	22, 467, 771, 1468, 1486
HpaII	CCGG	2 cut(s)	347, 1230
HphI	GGTGA	2 cut(s)	121, 1186
Hpy166II	GTNNAC	4 cut(s)	308, 319, 471, 775
Hpy188I	TCNGA	4 cut(s)	615, 916, 1120, 1279
Hpy188III	TCNNGA	4 cut(s)	71, 446, 742, 1165
Hpy8I	GTNNAC	4 cut(s)	308, 319, 471, 775
Hpy99I	CGWCG	1 cut(s)	927
HpyAV	CCTTC	2 cut(s)	1165, 1444
HpyCH4III	ACNGT	5 cut(s)	175, 952, 1125, 1439, 1465
HpyCH4IV	ACGT	1 cut(s)	922
HpyCH4V	TGCA	6 cut(s)	890, 1016, 1221, 1270, 1434, 1442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1067, 1431
HpyF3I	CTNAG	3 cut(s)	230, 540, 1537
HpySE526I	ACGT	1 cut(s)	922
Hsp92I	GRCGYC	1 cut(s)	922
Ksp22I	TGATCA	1 cut(s)	565
LguI	GCTCTTC	2 cut(s)	1136, 1231
LmnI	GCTCC	2 cut(s)	884, 1291
Lsp1109I	GCAGC	3 cut(s)	874, 1282, 1347
LweI	GCATC	2 cut(s)	343, 1057
MaeII	ACGT	1 cut(s)	922
MaeIII	GTNAC	2 cut(s)	994, 1107
MboII	GAAGA	8 cut(s)	268, 755, 758, 1087, 1123, 1248, 1273, 1495
MflI	RGATCY	4 cut(s)	205, 760, 1045, 1503
MhlI	GDGCHC	1 cut(s)	562
MluCI	AATT	8 cut(s)	13, 441, 622, 823, 1023, 1199, 1253, 1352
MlyI	GAGTC	3 cut(s)	16, 476, 780
MmeI	TCCRAC	1 cut(s)	665
MseI	TTAA	4 cut(s)	17, 29, 636, 1197
MslI	CAYNNNNRTG	2 cut(s)	803, 966
MspI	CCGG	2 cut(s)	347, 1230
Mva1269I	GAATGC	1 cut(s)	1221
MwoI	GCNNNNNNNGC	2 cut(s)	1067, 1431
NcoI	CCATGG	2 cut(s)	133, 1490
NlaIV	GGNNCC	6 cut(s)	224, 501, 559, 970, 1098, 1293
NspV	TTCGAA	1 cut(s)	955
OliI	CACNNNNGTG	1 cut(s)	966
PaeR7I	CTCGAG	1 cut(s)	425
PciSI	GCTCTTC	2 cut(s)	1136, 1231
PctI	GAATGC	1 cut(s)	1221
PfeI	GAWTC	2 cut(s)	1468, 1486
PkrI	GCNGC	3 cut(s)	889, 1272, 1337
PleI	GAGTC	3 cut(s)	16, 475, 779
PpsI	GAGTC	3 cut(s)	16, 475, 779
PpuMI	RGGWCCY	1 cut(s)	1097
PshAI	GACNNNNGTC	1 cut(s)	921
PsiI	TTATAA	2 cut(s)	678, 705
Psp5II	RGGWCCY	1 cut(s)	1097
PspN4I	GGNNCC	6 cut(s)	224, 501, 559, 970, 1098, 1293
PspPI	GGNCC	2 cut(s)	223, 1097
PspPPI	RGGWCCY	1 cut(s)	1097
PspXI	VCTCGAGB	1 cut(s)	425
PstNI	CAGNNNCTG	1 cut(s)	1061
PsuI	RGATCY	4 cut(s)	205, 760, 1045, 1503
RsaI	GTAC	2 cut(s)	143, 935
RsaNI	GTAC	2 cut(s)	142, 934
RseI	CAYNNNNRTG	2 cut(s)	803, 966
SapI	GCTCTTC	2 cut(s)	1136, 1231
SaqAI	TTAA	4 cut(s)	17, 29, 636, 1197
SatI	GCNGC	3 cut(s)	888, 1271, 1336
Sau96I	GGNCC	2 cut(s)	223, 1097
SchI	GAGTC	3 cut(s)	16, 476, 780
SduI	GDGCHC	1 cut(s)	562
SfaNI	GCATC	2 cut(s)	343, 1057
Sfr274I	CTCGAG	1 cut(s)	425
SfuI	TTCGAA	1 cut(s)	955
SinI	GGWCC	2 cut(s)	223, 1097
SlaI	CTCGAG	1 cut(s)	425
SmiMI	CAYNNNNRTG	2 cut(s)	803, 966
SmlI	CTYRAG	2 cut(s)	425, 446
SmoI	CTYRAG	2 cut(s)	425, 446
Sse9I	AATT	8 cut(s)	13, 441, 622, 823, 1023, 1199, 1253, 1352
SspI	AATATT	3 cut(s)	378, 694, 894
StyI	CCWWGG	4 cut(s)	133, 1092, 1371, 1490
TaaI	ACNGT	5 cut(s)	175, 952, 1125, 1439, 1465
TaiI	ACGT	1 cut(s)	925
TaqI	TCGA	6 cut(s)	426, 743, 769, 925, 955, 1040
TasI	AATT	8 cut(s)	13, 441, 622, 823, 1023, 1199, 1253, 1352
TfiI	GAWTC	2 cut(s)	1468, 1486
Tru1I	TTAA	4 cut(s)	17, 29, 636, 1197
Tru9I	TTAA	4 cut(s)	17, 29, 636, 1197
TscAI	CASTG	4 cut(s)	178, 418, 1444, 1524
TseI	GCWGC	3 cut(s)	887, 1270, 1335
TspDTI	ATGAA	7 cut(s)	370, 935, 1184, 1214, 1266, 1365, 1397
TspRI	CASTG	4 cut(s)	178, 418, 1444, 1524
VpaK11BI	GGWCC	2 cut(s)	223, 1097
XapI	RAATTY	1 cut(s)	441
XcmI	CCANNNNNNNNNTGG	1 cut(s)	937
XhoI	CTCGAG	1 cut(s)	425
ZraI	GACGTC	1 cut(s)	923

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.