Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0013855

Physical Location & Seq

Genomic Coordinates Forward (+)

62881296 .. 62886694

Gene Structure 5399 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG402000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 408 bp

ATGTCTGGTAAAGGAGCAAAGGGTTTGTTAATGGGGAAATCCCCAGCGACCAACAAGGACAAAGACAACAAGAAGAAACCCACCTCTCGTTCTTCTCGAGCTGGCCTTCAGTTCCCAGTTGGTCGAATTCACCGTCTTTTGAAGACAAGGGTTCAGTCTAGCGGAAGAGTTGGGGCTACAGCTGCTGTGTACGCGGCTGCTATCTTGGAGTATCTGACTGCAGAAGTGTTGGAGTTGGCAGGTAATGCAAGCAAAGATCTAAAGGTGAAGCGTATAACACCCAGGCATCTGCAGCTTGCCATTCGTGGTGATGAAGAACTGGACACCCTGATCAAAGGTACAATAGCCGGCGGTGGCGTGATCCCTCACATTCACAAGTCTCTCATCAACAAGTCCTCTAAAGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000785 GO:0000790 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0006325 GO:0006342 GO:0006355 GO:0006996 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016043 GO:0016458 GO:0019219 GO:0019222 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0040029 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0045814 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0071840 GO:0080090 GO:0097159 GO:1901363 GO:1902679 GO:1903506 GO:1903507 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04217 ko05034 ko05322 map04217 map05034 map05322

Pfam Domains

Protein Families

Histone Histone_H2A_C

Protein Analysis

135

Amino Acids

14.41

Weight (kDa)

10.39

Isoelectric Point (pI)

46.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	19 - 103	2.1e-18	Core histone H2A/H2B/H3/H4 domain
Histone_H2A_C	PF16211	105 - 134	1.4e-10	C-terminus of histone H2A

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0013855)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54560 AT3G54560
prunus_persica	Prupe.1G472200_v2.0.a1 Prupe.1G472200_v2.0.a1
pyrus_communis	pycom15g10710
rosa_chinensis	RchiOBHm_Chr6g0298761
rosa_laevigata	RLG00000011488
rosa_multiflora	Rmu_ssc0000397.1_g000012
rosa_roxburghii	Rroxscaffold_7G00169360
rosa_rugosa	Rorug06G0282800 Rorug06G0282800 Rorug06G0282800
rosa_samantha	Rh6AG394200 Rh6BG402000 Rh6CG407900 Rh6DG394500
rosa_wichuraiana	Rw6G034480

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	230
AccII	CGCG	1 cut(s)	194
AciI	CCGC	3 cut(s)	162, 194, 351
AclWI	GGATC	1 cut(s)	355
AcsI	RAATTY	1 cut(s)	126
AcuI	CTGAAG	1 cut(s)	92
AfaI	GTAC	2 cut(s)	191, 340
AgsI	TTSAA	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	281
AluBI	AGCT	3 cut(s)	101, 182, 295
AluI	AGCT	3 cut(s)	101, 182, 295
Alw26I	GTCTC	1 cut(s)	384
AlwI	GGATC	1 cut(s)	355
AlwNI	CAGNNNCTG	1 cut(s)	185
Ama87I	CYCGRG	1 cut(s)	96
AoxI	GGCC	1 cut(s)	103
ApeKI	GCWGC	3 cut(s)	182, 197, 292
ApoI	RAATTY	1 cut(s)	126
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsuHPI	GGTGA	3 cut(s)	122, 277, 320
AvaI	CYCGRG	1 cut(s)	96
BbsI	GAAGAC	1 cut(s)	149
BbvI	GCAGC	3 cut(s)	169, 184, 304
BciT130I	CCWGG	1 cut(s)	283
BclI	TGATCA	1 cut(s)	330
BcoDI	GTCTC	1 cut(s)	384
BfaI	CTAG	1 cut(s)	159
BfmI	CTRYAG	3 cut(s)	177, 219, 290
BfuAI	ACCTGC	1 cut(s)	230
BglII	AGATCT	1 cut(s)	256
BisI	GCNGC	4 cut(s)	183, 195, 198, 293
BlsI	GCNGC	4 cut(s)	184, 196, 199, 294
Bme1390I	CCNGG	1 cut(s)	283
BmeT110I	CYCGRG	1 cut(s)	96
BmrFI	CCNGG	1 cut(s)	283
BmrI	ACTGGG	1 cut(s)	110
BmsI	GCATC	1 cut(s)	295
BmuI	ACTGGG	1 cut(s)	110
BpiI	GAAGAC	1 cut(s)	149
BsaJI	CCNNGG	1 cut(s)	281
Bse118I	RCCGGY	1 cut(s)	347
Bse1I	ACTGG	2 cut(s)	116, 324
BseBI	CCWGG	1 cut(s)	283
BseDI	CCNNGG	1 cut(s)	281
BseNI	ACTGG	2 cut(s)	116, 324
BseXI	GCAGC	3 cut(s)	169, 184, 304
BseYI	CCCAGC	1 cut(s)	43
Bsh1236I	CGCG	1 cut(s)	194
BshFI	GGCC	1 cut(s)	105
BsiHKCI	CYCGRG	1 cut(s)	96
BsiSI	CCGG	1 cut(s)	348
BsmAI	GTCTC	1 cut(s)	384
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	1 cut(s)	96
Bsp143I	GATC	3 cut(s)	256, 330, 360
BspACI	CCGC	3 cut(s)	162, 194, 351
BspANI	GGCC	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	194
BspMAI	CTGCAG	2 cut(s)	223, 294
BspMI	ACCTGC	1 cut(s)	230
BspPI	GGATC	1 cut(s)	355
BsrFI	RCCGGY	1 cut(s)	347
BsrI	ACTGG	2 cut(s)	116, 324
BssAI	RCCGGY	1 cut(s)	347
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	256, 330, 360
Bst2UI	CCWGG	1 cut(s)	283
Bst4CI	ACNGT	1 cut(s)	134
Bst6I	CTCTTC	1 cut(s)	160
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstC8I	GCNNGC	4 cut(s)	103, 250, 297, 349
BstFNI	CGCG	1 cut(s)	194
BstKTI	GATC	3 cut(s)	259, 333, 363
BstMAI	GTCTC	1 cut(s)	384
BstMBI	GATC	3 cut(s)	256, 330, 360
BstMWI	GCNNNNNNNGC	4 cut(s)	182, 191, 245, 292
BstNI	CCWGG	1 cut(s)	283
BstSCI	CCNGG	1 cut(s)	281
BstSFI	CTRYAG	3 cut(s)	177, 219, 290
BstUI	CGCG	1 cut(s)	194
BstV1I	GCAGC	3 cut(s)	169, 184, 304
BstV2I	GAAGAC	1 cut(s)	149
BstX2I	RGATCY	1 cut(s)	256
BstYI	RGATCY	1 cut(s)	256
BsuRI	GGCC	1 cut(s)	105
BveI	ACCTGC	1 cut(s)	230
Cac8I	GCNNGC	4 cut(s)	103, 250, 297, 349
CaiI	CAGNNNCTG	1 cut(s)	185
Cfr10I	RCCGGY	1 cut(s)	347
Csp6I	GTAC	2 cut(s)	190, 339
CviJI	RGCY	7 cut(s)	101, 105, 176, 182, 197, 295, 347
CviKI_1	RGCY	7 cut(s)	101, 105, 176, 182, 197, 295, 347
CviQI	GTAC	2 cut(s)	190, 339
DpnI	GATC	3 cut(s)	258, 332, 362
DpnII	GATC	3 cut(s)	256, 330, 360
Eam1104I	CTCTTC	1 cut(s)	160
EarI	CTCTTC	1 cut(s)	160
Eco57I	CTGAAG	1 cut(s)	92
Eco88I	CYCGRG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	126
EcoRII	CCWGG	1 cut(s)	281
FaiI	YATR	1 cut(s)	275
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	4 cut(s)	183, 195, 198, 293
Fsp4HI	GCNGC	4 cut(s)	183, 195, 198, 293
FspBI	CTAG	1 cut(s)	159
GluI	GCNGC	4 cut(s)	183, 195, 198, 293
GsaI	CCCAGC	1 cut(s)	47
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	1 cut(s)	348
HpaII	CCGG	1 cut(s)	348
HphI	GGTGA	3 cut(s)	122, 277, 320
Hpy166II	GTNNAC	1 cut(s)	190
Hpy188I	TCNGA	1 cut(s)	216
Hpy188III	TCNNGA	1 cut(s)	96
Hpy8I	GTNNAC	1 cut(s)	190
HpyAV	CCTTC	1 cut(s)	116
HpyCH4III	ACNGT	1 cut(s)	134
HpyCH4V	TGCA	3 cut(s)	221, 248, 292
HpyF10VI	GCNNNNNNNGC	4 cut(s)	182, 191, 245, 292
KroI	GCCGGC	1 cut(s)	347
KroNI	GCCGGC	1 cut(s)	349
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	256, 330, 360
LmnI	GCTCC	1 cut(s)	14
LpnPI	CCDG	9 cut(s)	57, 87, 129, 225, 268, 295, 305, 341, 361
Lsp1109I	GCAGC	3 cut(s)	169, 184, 304
LweI	GCATC	1 cut(s)	295
MaeI	CTAG	1 cut(s)	159
MalI	GATC	3 cut(s)	258, 332, 362
MboI	GATC	3 cut(s)	256, 330, 360
MboII	GAAGA	5 cut(s)	84, 85, 154, 177, 326
MflI	RGATCY	1 cut(s)	256
MluCI	AATT	1 cut(s)	126
MmeI	TCCRAC	1 cut(s)	210
MnlI	CCTC	3 cut(s)	94, 375, 406
MroNI	GCCGGC	1 cut(s)	347
MseI	TTAA	1 cut(s)	29
MspA1I	CMGCKG	1 cut(s)	182
MspI	CCGG	1 cut(s)	348
MspR9I	CCNGG	1 cut(s)	283
MvaI	CCWGG	1 cut(s)	283
MvnI	CGCG	1 cut(s)	194
MwoI	GCNNNNNNNGC	4 cut(s)	182, 191, 245, 292
NaeI	GCCGGC	1 cut(s)	349
NdeII	GATC	3 cut(s)	256, 330, 360
NgoMIV	GCCGGC	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	96
PcsI	WCGNNNNNNNCGW	2 cut(s)	94, 130
PdiI	GCCGGC	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	184, 196, 199, 294
Psp6I	CCWGG	1 cut(s)	281
PspFI	CCCAGC	1 cut(s)	43
PspGI	CCWGG	1 cut(s)	281
PstI	CTGCAG	2 cut(s)	223, 294
PstNI	CAGNNNCTG	1 cut(s)	185
PsuI	RGATCY	1 cut(s)	256
PvuII	CAGCTG	1 cut(s)	182
RsaI	GTAC	2 cut(s)	191, 340
RsaNI	GTAC	2 cut(s)	190, 339
SaqAI	TTAA	1 cut(s)	29
SatI	GCNGC	4 cut(s)	183, 195, 198, 293
Sau3AI	GATC	3 cut(s)	256, 330, 360
ScrFI	CCNGG	1 cut(s)	283
SetI	ASST	7 cut(s)	86, 103, 184, 244, 267, 297, 340
SfaNI	GCATC	1 cut(s)	295
SfcI	CTRYAG	3 cut(s)	177, 219, 290
Sfr274I	CTCGAG	1 cut(s)	96
SlaI	CTCGAG	1 cut(s)	96
SmlI	CTYRAG	1 cut(s)	96
SmoI	CTYRAG	1 cut(s)	96
Sse9I	AATT	1 cut(s)	126
SsiI	CCGC	3 cut(s)	162, 194, 351
SspMI	CTAG	1 cut(s)	159
StyD4I	CCNGG	1 cut(s)	281
TaaI	ACNGT	1 cut(s)	134
TaqI	TCGA	2 cut(s)	97, 124
TasI	AATT	1 cut(s)	126
TauI	GCSGC	1 cut(s)	197
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TseI	GCWGC	3 cut(s)	182, 197, 292
TspDTI	ATGAA	1 cut(s)	327
XapI	RAATTY	1 cut(s)	126
XhoI	CTCGAG	1 cut(s)	96
XspI	CTAG	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.