Rmu_ssc0000397.1_g000012

Histone H2A

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000397.1
OG0013855
Physical Location & Seq
Forward (+)
54888 .. 55190
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000397.1_g000012.1.cds

Sequence Viewer

Length: 303 bp
ctgcagttcccagttggtcgaattcaccgtcttttgaagacaagggttcaatctagcggaagagttggggctacagctgctgtgtacgcagctgctatcttggagtatctgactgcagaagtgttggagttggcaggtaatgcaagcaaagatctaaaggtgaagcgtataacacccaggcatctgcagcttgccattcgtggtgatgaagaactggacaccctgatcaaaggtacaatagccggcggtggcgtgatccctcacattcacaagtctctcatcaacaagtcctctaaagaataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko05034 ko05322 map04217 map05034 map05322
Pfam Domains
Protein Families
Histone Histone_H2A_C

Protein Analysis

100

Amino Acids

10.79

Weight (kDa)

9.99

Isoelectric Point (pI)

41.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0013855)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G54560 AT3G54560
prunus_persica Prupe.1G472200_v2.0.a1 Prupe.1G472200_v2.0.a1
pyrus_communis pycom15g10710
rosa_chinensis RchiOBHm_Chr6g0298761
rosa_laevigata RLG00000011488
rosa_multiflora Rmu_ssc0000397.1_g000012
rosa_roxburghii Rroxscaffold_7G00169360
rosa_rugosa Rorug06G0282800 Rorug06G0282800 Rorug06G0282800
rosa_samantha Rh6AG394200 Rh6BG402000 Rh6CG407900 Rh6DG394500
rosa_wichuraiana Rw6G034480

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 125
AciI CCGC 2 cut(s) 57, 246
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 1 cut(s) 21
AfaI GTAC 2 cut(s) 86, 235
AgsI TTSAA 2 cut(s) 37, 50
AjnI CCWGG 1 cut(s) 176
AluBI AGCT 3 cut(s) 77, 92, 190
AluI AGCT 3 cut(s) 77, 92, 190
Alw26I GTCTC 1 cut(s) 279
AlwI GGATC 1 cut(s) 250
AlwNI CAGNNNCTG 1 cut(s) 80
ApeKI GCWGC 4 cut(s) 77, 89, 92, 187
ApoI RAATTY 1 cut(s) 21
ArsI GACNNNNNNTTYG 2 cut(s) 13, 45
AsuHPI GGTGA 3 cut(s) 17, 172, 215
BbsI GAAGAC 1 cut(s) 44
BbvI GCAGC 4 cut(s) 64, 79, 101, 199
BciT130I CCWGG 1 cut(s) 178
BclI TGATCA 1 cut(s) 225
BcoDI GTCTC 1 cut(s) 279
BfaI CTAG 1 cut(s) 54
BfmI CTRYAG 4 cut(s) 2, 72, 114, 185
BfuAI ACCTGC 1 cut(s) 125
BglII AGATCT 1 cut(s) 151
BisI GCNGC 4 cut(s) 78, 90, 93, 188
BlsI GCNGC 4 cut(s) 79, 91, 94, 189
Bme1390I CCNGG 1 cut(s) 178
BmrFI CCNGG 1 cut(s) 178
BmrI ACTGGG 1 cut(s) 5
BmsI GCATC 1 cut(s) 190
BmuI ACTGGG 1 cut(s) 5
BpiI GAAGAC 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 176
Bse118I RCCGGY 1 cut(s) 242
Bse1I ACTGG 2 cut(s) 11, 219
BseBI CCWGG 1 cut(s) 178
BseDI CCNNGG 1 cut(s) 176
BseNI ACTGG 2 cut(s) 11, 219
BseXI GCAGC 4 cut(s) 64, 79, 101, 199
BsiSI CCGG 1 cut(s) 243
BsmAI GTCTC 1 cut(s) 279
Bsp143I GATC 3 cut(s) 151, 225, 255
BspACI CCGC 2 cut(s) 57, 246
BspMAI CTGCAG 3 cut(s) 6, 118, 189
BspMI ACCTGC 1 cut(s) 125
BspPI GGATC 1 cut(s) 250
BsrFI RCCGGY 1 cut(s) 242
BsrI ACTGG 2 cut(s) 11, 219
BssAI RCCGGY 1 cut(s) 242
BssECI CCNNGG 1 cut(s) 176
BssMI GATC 3 cut(s) 151, 225, 255
Bst2UI CCWGG 1 cut(s) 178
Bst4CI ACNGT 1 cut(s) 29
Bst6I CTCTTC 1 cut(s) 55
BstAPI GCANNNNNTGC 1 cut(s) 140
BstC8I GCNNGC 3 cut(s) 145, 192, 244
BstKTI GATC 3 cut(s) 154, 228, 258
BstMAI GTCTC 1 cut(s) 279
BstMBI GATC 3 cut(s) 151, 225, 255
BstMWI GCNNNNNNNGC 4 cut(s) 77, 86, 140, 187
BstNI CCWGG 1 cut(s) 178
BstSCI CCNGG 1 cut(s) 176
BstSFI CTRYAG 4 cut(s) 2, 72, 114, 185
BstV1I GCAGC 4 cut(s) 64, 79, 101, 199
BstV2I GAAGAC 1 cut(s) 44
BstX2I RGATCY 1 cut(s) 151
BstYI RGATCY 1 cut(s) 151
BveI ACCTGC 1 cut(s) 125
Cac8I GCNNGC 3 cut(s) 145, 192, 244
CaiI CAGNNNCTG 1 cut(s) 80
Cfr10I RCCGGY 1 cut(s) 242
Csp6I GTAC 2 cut(s) 85, 234
CviJI RGCY 5 cut(s) 71, 77, 92, 190, 242
CviKI_1 RGCY 5 cut(s) 71, 77, 92, 190, 242
CviQI GTAC 2 cut(s) 85, 234
DpnI GATC 3 cut(s) 153, 227, 257
DpnII GATC 3 cut(s) 151, 225, 255
Eam1104I CTCTTC 1 cut(s) 55
EarI CTCTTC 1 cut(s) 55
EcoRI GAATTC 1 cut(s) 21
EcoRII CCWGG 1 cut(s) 176
FaiI YATR 1 cut(s) 170
FbaI TGATCA 1 cut(s) 225
Fnu4HI GCNGC 4 cut(s) 78, 90, 93, 188
Fsp4HI GCNGC 4 cut(s) 78, 90, 93, 188
FspBI CTAG 1 cut(s) 54
GluI GCNGC 4 cut(s) 78, 90, 93, 188
HapII CCGG 1 cut(s) 243
HpaII CCGG 1 cut(s) 243
HphI GGTGA 3 cut(s) 17, 172, 215
Hpy166II GTNNAC 1 cut(s) 85
Hpy188I TCNGA 1 cut(s) 111
Hpy8I GTNNAC 1 cut(s) 85
HpyCH4III ACNGT 1 cut(s) 29
HpyCH4V TGCA 4 cut(s) 4, 116, 143, 187
HpyF10VI GCNNNNNNNGC 4 cut(s) 77, 86, 140, 187
KroI GCCGGC 1 cut(s) 242
KroNI GCCGGC 1 cut(s) 244
Ksp22I TGATCA 1 cut(s) 225
Kzo9I GATC 3 cut(s) 151, 225, 255
LpnPI CCDG 7 cut(s) 24, 120, 163, 190, 200, 236, 256
Lsp1109I GCAGC 4 cut(s) 64, 79, 101, 199
LweI GCATC 1 cut(s) 190
MaeI CTAG 1 cut(s) 54
MalI GATC 3 cut(s) 153, 227, 257
MboI GATC 3 cut(s) 151, 225, 255
MboII GAAGA 3 cut(s) 49, 72, 221
MflI RGATCY 1 cut(s) 151
MluCI AATT 1 cut(s) 21
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 2 cut(s) 270, 301
MroNI GCCGGC 1 cut(s) 242
MspA1I CMGCKG 2 cut(s) 77, 92
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 1 cut(s) 178
MvaI CCWGG 1 cut(s) 178
MwoI GCNNNNNNNGC 4 cut(s) 77, 86, 140, 187
NaeI GCCGGC 1 cut(s) 244
NdeII GATC 3 cut(s) 151, 225, 255
NgoMIV GCCGGC 1 cut(s) 242
PcsI WCGNNNNNNNCGW 1 cut(s) 25
PdiI GCCGGC 1 cut(s) 244
PkrI GCNGC 4 cut(s) 79, 91, 94, 189
Psp6I CCWGG 1 cut(s) 176
PspGI CCWGG 1 cut(s) 176
PstI CTGCAG 3 cut(s) 6, 118, 189
PstNI CAGNNNCTG 1 cut(s) 80
PsuI RGATCY 1 cut(s) 151
PvuII CAGCTG 2 cut(s) 77, 92
RsaI GTAC 2 cut(s) 86, 235
RsaNI GTAC 2 cut(s) 85, 234
SatI GCNGC 4 cut(s) 78, 90, 93, 188
Sau3AI GATC 3 cut(s) 151, 225, 255
ScrFI CCNGG 1 cut(s) 178
SetI ASST 6 cut(s) 79, 94, 139, 162, 192, 235
SfaNI GCATC 1 cut(s) 190
SfcI CTRYAG 4 cut(s) 2, 72, 114, 185
Sse9I AATT 1 cut(s) 21
SsiI CCGC 2 cut(s) 57, 246
SspMI CTAG 1 cut(s) 54
StyD4I CCNGG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 29
TaqI TCGA 1 cut(s) 19
TasI AATT 1 cut(s) 21
TseI GCWGC 4 cut(s) 77, 89, 92, 187
TspDTI ATGAA 1 cut(s) 222
XapI RAATTY 1 cut(s) 21
XspI CTAG 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.