pycom15g12600

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Forward (+)
8605507 .. 8605728
222 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g12600.1

Sequence Viewer

Length: 222 bp
ATGCTCTGGCATGACTGTAAAGTAGCTTGTGCATGCAAAATCAAGCAGAGATGTTTTGCCAATATTTTTTCGGCTTTCCATTCAAATTTTGAGCAGTGTGTTGTGCAGTTGTCAATAGCCATAGTTTTAGGAGCGACTTCTTCATTCATTCATTCTCTCGCCGCACGAGATTTTAGTTTCAGTCCTTGTAGAGAGCCAGACAGATCCATCTCCAGTTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

74

Amino Acids

8.14

Weight (kDa)

8.3

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024698)

Species Orthologous Gene IDs
pyrus_communis pycom15g12600 pycom520g00780
rosa_samantha Rh2DG331500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 162
AclWI GGATC 1 cut(s) 198
AcsI RAATTY 1 cut(s) 85
AgsI TTSAA 1 cut(s) 84
AluBI AGCT 1 cut(s) 26
AluI AGCT 1 cut(s) 26
AlwI GGATC 1 cut(s) 198
ApoI RAATTY 1 cut(s) 85
BauI CACGAG 1 cut(s) 165
BccI CCATC 1 cut(s) 215
BisI GCNGC 1 cut(s) 162
BlsI GCNGC 1 cut(s) 163
BpmI CTGGAG 1 cut(s) 196
Bse1I ACTGG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 213
BsgI GTGCAG 1 cut(s) 125
Bsp143I GATC 1 cut(s) 203
BspACI CCGC 1 cut(s) 162
BspPI GGATC 1 cut(s) 198
BsrI ACTGG 1 cut(s) 213
BssMI GATC 1 cut(s) 203
BssSI CACGAG 1 cut(s) 165
Bst2BI CACGAG 1 cut(s) 165
Bst4CI ACNGT 1 cut(s) 17
BstC8I GCNNGC 1 cut(s) 34
BstKTI GATC 1 cut(s) 206
BstMBI GATC 1 cut(s) 203
BstNSI RCATGY 1 cut(s) 36
BstX2I RGATCY 1 cut(s) 203
BstYI RGATCY 1 cut(s) 203
BtsI GCAGTG 1 cut(s) 101
BtsIMutI CAGTG 1 cut(s) 101
Cac8I GCNNGC 1 cut(s) 34
CviAII CATG 2 cut(s) 11, 33
CviJI RGCY 4 cut(s) 26, 74, 119, 196
CviKI_1 RGCY 4 cut(s) 26, 74, 119, 196
DpnI GATC 1 cut(s) 205
DpnII GATC 1 cut(s) 203
FaeI CATG 2 cut(s) 14, 36
FaiI YATR 4 cut(s) 12, 34, 122, 220
FatI CATG 2 cut(s) 10, 32
Fnu4HI GCNGC 1 cut(s) 162
Fsp4HI GCNGC 1 cut(s) 162
FspEI CC 8 cut(s) 56, 73, 92, 114, 133, 175, 198, 210
GluI GCNGC 1 cut(s) 162
GsuI CTGGAG 1 cut(s) 196
Hin1II CATG 2 cut(s) 14, 36
HpyCH4III ACNGT 1 cut(s) 17
HpyCH4V TGCA 3 cut(s) 32, 36, 106
Hsp92II CATG 2 cut(s) 14, 36
Kzo9I GATC 1 cut(s) 203
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 1 cut(s) 210
MalI GATC 1 cut(s) 205
MboI GATC 1 cut(s) 203
MboII GAAGA 1 cut(s) 132
MflI RGATCY 1 cut(s) 203
MluCI AATT 1 cut(s) 85
NdeII GATC 1 cut(s) 203
NlaIII CATG 2 cut(s) 14, 36
NspI RCATGY 1 cut(s) 36
PaeI GCATGC 1 cut(s) 36
PkrI GCNGC 1 cut(s) 163
PsuI RGATCY 1 cut(s) 203
SatI GCNGC 1 cut(s) 162
Sau3AI GATC 1 cut(s) 203
SetI ASST 1 cut(s) 28
SphI GCATGC 1 cut(s) 36
Sse9I AATT 1 cut(s) 85
SsiI CCGC 1 cut(s) 162
SspI AATATT 1 cut(s) 64
TaaI ACNGT 1 cut(s) 17
TasI AATT 1 cut(s) 85
TauI GCSGC 1 cut(s) 164
TscAI CASTG 1 cut(s) 101
TspDTI ATGAA 3 cut(s) 132, 136, 140
TspRI CASTG 1 cut(s) 101
XapI RAATTY 1 cut(s) 85
XceI RCATGY 1 cut(s) 36
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.