pycom520g00780

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Basic Information

Type: gene
Biological Identity
pyrus_communis
SuperScaffold_520
Physical Location & Seq
Forward (+)
630349 .. 630815
467 bp
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UTR
Exon/CDS
Intron
pycom520g00780.2

Sequence Viewer

Length: 372 bp
ATGTTTACATTTTTCTTGAATCTGAAACATGCAGATTTGTACACACCATTATCTCCGAAAGTATCATGGTACATACAAAGCAATGGGGAATGGAAGCAGAAGGATGAGGATGGCACAACCCCTAATTTCATCACTATTCTTCGGCAAGACTACTTCAACTTGAAAGCCAGAGGTATGCTTGGGACTCTAAAAGTGCTTTGGCATGACTGTAAAGTAGCTCTCGTGCATAGAAAACCAAGCAGAAATGTTTTGCTGCGATTTTTTTCGGCTTTCCATTCAAATTTTGAGCGGTGTGTTGTGGAATTGTCAAATAGCCATAGTTTTAGAAGCGACGTCTTCATTCATTCATTCTCTCACCACACGAGATTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

124

Amino Acids

14.58

Weight (kDa)

9.64

Isoelectric Point (pI)

27.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024698)

Species Orthologous Gene IDs
pyrus_communis pycom15g12600 pycom520g00780
rosa_samantha Rh2DG331500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 336
AccBSI CCGCTC 1 cut(s) 289
AciI CCGC 1 cut(s) 289
AcsI RAATTY 1 cut(s) 280
AcyI GRCGYC 1 cut(s) 333
AfaI GTAC 2 cut(s) 41, 71
AgsI TTSAA 4 cut(s) 19, 157, 163, 279
AluBI AGCT 1 cut(s) 218
AluI AGCT 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 253
ApoI RAATTY 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 347
BauI CACGAG 2 cut(s) 221, 361
BbsI GAAGAC 1 cut(s) 328
BbvI GCAGC 1 cut(s) 240
BccI CCATC 1 cut(s) 104
BisI GCNGC 1 cut(s) 254
BlsI GCNGC 1 cut(s) 255
BpiI GAAGAC 1 cut(s) 328
BsaHI GRCGYC 1 cut(s) 333
Bse3DI GCAATG 1 cut(s) 88
BseGI GGATG 2 cut(s) 109, 115
BseMI GCAATG 1 cut(s) 88
BseXI GCAGC 1 cut(s) 240
BslFI GGGAC 1 cut(s) 196
BsmFI GGGAC 1 cut(s) 196
Bsp1407I TGTACA 1 cut(s) 39
BspACI CCGC 1 cut(s) 289
BsrBI CCGCTC 1 cut(s) 289
BsrDI GCAATG 1 cut(s) 88
BsrGI TGTACA 1 cut(s) 39
BssNI GRCGYC 1 cut(s) 333
BssSI CACGAG 2 cut(s) 221, 361
Bst2BI CACGAG 2 cut(s) 221, 361
Bst4CI ACNGT 1 cut(s) 209
BstACI GRCGYC 1 cut(s) 333
BstAUI TGTACA 1 cut(s) 39
BstF5I GGATG 2 cut(s) 109, 115
BstNSI RCATGY 1 cut(s) 32
BstV1I GCAGC 1 cut(s) 240
BstV2I GAAGAC 1 cut(s) 328
BtsCI GGATG 2 cut(s) 109, 115
Csp6I GTAC 2 cut(s) 40, 70
CviAII CATG 3 cut(s) 29, 66, 203
CviJI RGCY 4 cut(s) 167, 218, 269, 315
CviKI_1 RGCY 4 cut(s) 167, 218, 269, 315
CviQI GTAC 2 cut(s) 40, 70
FaeI CATG 3 cut(s) 32, 69, 206
FaiI YATR 7 cut(s) 30, 67, 74, 176, 204, 228, 318
FaqI GGGAC 1 cut(s) 196
FatI CATG 3 cut(s) 28, 65, 202
Fnu4HI GCNGC 1 cut(s) 254
FokI GGATG 2 cut(s) 116, 122
Fsp4HI GCNGC 1 cut(s) 254
GluI GCNGC 1 cut(s) 254
Hin1I GRCGYC 1 cut(s) 333
Hin1II CATG 3 cut(s) 32, 69, 206
HinfI GANTC 2 cut(s) 19, 184
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 2 cut(s) 6, 42
Hpy188I TCNGA 2 cut(s) 24, 57
Hpy188III TCNNGA 1 cut(s) 16
Hpy8I GTNNAC 2 cut(s) 6, 42
Hpy99I CGWCG 1 cut(s) 335
HpyAV CCTTC 1 cut(s) 94
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4IV ACGT 1 cut(s) 333
HpyCH4V TGCA 2 cut(s) 32, 226
HpySE526I ACGT 1 cut(s) 333
Hsp92I GRCGYC 1 cut(s) 333
Hsp92II CATG 3 cut(s) 32, 69, 206
LpnPI CCDG 1 cut(s) 181
Lsp1109I GCAGC 1 cut(s) 240
MaeII ACGT 1 cut(s) 333
MbiI CCGCTC 1 cut(s) 289
MboII GAAGA 2 cut(s) 131, 328
MluCI AATT 3 cut(s) 124, 280, 302
MlyI GAGTC 1 cut(s) 178
MnlI CCTC 2 cut(s) 100, 164
NlaIII CATG 3 cut(s) 32, 69, 206
NspI RCATGY 1 cut(s) 32
PfeI GAWTC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 255
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
RsaI GTAC 2 cut(s) 41, 71
RsaNI GTAC 2 cut(s) 40, 70
SatI GCNGC 1 cut(s) 254
SchI GAGTC 1 cut(s) 178
SetI ASST 3 cut(s) 175, 220, 336
Sse9I AATT 3 cut(s) 124, 280, 302
SsiI CCGC 1 cut(s) 289
TaaI ACNGT 1 cut(s) 209
TaiI ACGT 1 cut(s) 336
TasI AATT 3 cut(s) 124, 280, 302
TatI WGTACW 1 cut(s) 39
TfiI GAWTC 1 cut(s) 19
TseI GCWGC 1 cut(s) 253
TspDTI ATGAA 4 cut(s) 118, 328, 332, 336
XapI RAATTY 1 cut(s) 280
XceI RCATGY 1 cut(s) 32
ZraI GACGTC 1 cut(s) 334
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.