Rh2DG331500

Acts as a Mg(2 ) transporter. Can also transport other divalent cations such as Fe(2 ), Sr(2 ), Ba(2 ), Mn(2 ) and Co(2 ) but to a much less extent than Mg(2 )

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0024698
Physical Location & Seq
Forward (+)
42339355 .. 42343164
3810 bp
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UTR
Exon/CDS
Intron
Rh2DG331500.1

Sequence Viewer

Length: 297 bp
ATGGATAGTGCGGTGTTAGCGCATTTCCTGTTAAAGGAGAAACTCCAGAAAATGGGAATGTTGGGCTGCCTTTTATGCATAGTGGGTTCGGTTGTGATTGTACTCCATGCACCCGAAGAGCAGACTCTTACTTCCGTCCAACAAATCTGGGATTTAGCAATACAACCAGATTTGTATACGCCATTATCTCCTAAAGTATCATGGTACATCCAAAGCAATGGAGAATGGAAGCAGAAGGATGAAGACGGTTCAGCCCCCAATTTCATCACAGTACTTCGGCCAGACTATTTCAAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Mg_trans_NIPA

Protein Analysis

98

Amino Acids

11.08

Weight (kDa)

5.16

Isoelectric Point (pI)

36.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mg_trans_NIPA PF05653 3 - 57 1.6e-19 Magnesium transporter NIPA
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0024698)

Species Orthologous Gene IDs
pyrus_communis pycom15g12600 pycom520g00780
rosa_samantha Rh2DG331500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 52
AccI GTMKAC 1 cut(s) 176
AciI CCGC 1 cut(s) 11
AcoI YGGCCR 1 cut(s) 278
AfaI GTAC 3 cut(s) 102, 206, 273
AfiI CCNNNNNNNGG 2 cut(s) 34, 52
AgsI TTSAA 1 cut(s) 292
AoxI GGCC 1 cut(s) 278
ApeKI GCWGC 1 cut(s) 66
AspLEI GCGC 1 cut(s) 22
BbsI GAAGAC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 53
BisI GCNGC 1 cut(s) 67
BlsI GCNGC 1 cut(s) 68
BmcAI AGTACT 1 cut(s) 273
BpiI GAAGAC 1 cut(s) 249
BpmI CTGGAG 1 cut(s) 29
Bsc4I CCNNNNNNNGG 2 cut(s) 34, 52
Bse3DI GCAATG 1 cut(s) 223
BseGI GGATG 2 cut(s) 207, 244
BseLI CCNNNNNNNGG 2 cut(s) 34, 52
BseMI GCAATG 1 cut(s) 223
BseXI GCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 280
BslI CCNNNNNNNGG 2 cut(s) 34, 52
BsnI GGCC 1 cut(s) 280
BspACI CCGC 1 cut(s) 11
BspANI GGCC 1 cut(s) 280
BspQI GCTCTTC 1 cut(s) 111
BsrDI GCAATG 1 cut(s) 223
BssNAI GTATAC 1 cut(s) 177
Bst1107I GTATAC 1 cut(s) 177
Bst4CI ACNGT 2 cut(s) 248, 271
Bst6I CTCTTC 1 cut(s) 111
BstENI CCTNNNNNAGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 207, 244
BstHHI GCGC 1 cut(s) 22
BstMWI GCNNNNNNNGC 2 cut(s) 17, 75
BstV1I GCAGC 1 cut(s) 53
BstV2I GAAGAC 1 cut(s) 249
BstXI CCANNNNNNTGG 1 cut(s) 218
BstZ17I GTATAC 1 cut(s) 177
BsuRI GGCC 1 cut(s) 280
BtsCI GGATG 2 cut(s) 207, 244
CfoI GCGC 1 cut(s) 22
Csp6I GTAC 3 cut(s) 101, 205, 272
CviAII CATG 2 cut(s) 107, 201
CviJI RGCY 3 cut(s) 66, 254, 280
CviKI_1 RGCY 3 cut(s) 66, 254, 280
CviQI GTAC 3 cut(s) 101, 205, 272
EaeI YGGCCR 1 cut(s) 278
Eam1104I CTCTTC 1 cut(s) 111
EarI CTCTTC 1 cut(s) 111
EcoNI CCTNNNNNAGG 1 cut(s) 32
EcoT22I ATGCAT 1 cut(s) 80
FaeI CATG 2 cut(s) 110, 204
FaiI YATR 5 cut(s) 76, 80, 108, 177, 202
FatI CATG 2 cut(s) 106, 200
FblI GTMKAC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 67
FokI GGATG 2 cut(s) 194, 251
Fsp4HI GCNGC 1 cut(s) 67
GlaI GCGC 1 cut(s) 21
GluI GCNGC 1 cut(s) 67
GsuI CTGGAG 1 cut(s) 29
HaeIII GGCC 1 cut(s) 280
HhaI GCGC 1 cut(s) 22
Hin1II CATG 2 cut(s) 110, 204
Hin6I GCGC 1 cut(s) 20
HinP1I GCGC 1 cut(s) 20
HinfI GANTC 1 cut(s) 124
Hpy166II GTNNAC 1 cut(s) 177
Hpy188III TCNNGA 1 cut(s) 46
Hpy8I GTNNAC 1 cut(s) 177
HpyAV CCTTC 1 cut(s) 229
HpyCH4III ACNGT 2 cut(s) 248, 271
HpyCH4V TGCA 2 cut(s) 78, 110
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 75
Hsp92II CATG 2 cut(s) 110, 204
HspAI GCGC 1 cut(s) 20
LguI GCTCTTC 1 cut(s) 111
LpnPI CCDG 4 cut(s) 41, 59, 133, 180
Lsp1109I GCAGC 1 cut(s) 53
MboII GAAGA 2 cut(s) 128, 254
MluCI AATT 1 cut(s) 259
MlyI GAGTC 1 cut(s) 118
MmeI TCCRAC 1 cut(s) 163
Mph1103I ATGCAT 1 cut(s) 80
MseI TTAA 1 cut(s) 32
MwoI GCNNNNNNNGC 2 cut(s) 17, 75
NlaIII CATG 2 cut(s) 110, 204
NsiI ATGCAT 1 cut(s) 80
PciSI GCTCTTC 1 cut(s) 111
PflMI CCANNNNNTGG 1 cut(s) 52
PkrI GCNGC 1 cut(s) 68
PleI GAGTC 1 cut(s) 118
PpsI GAGTC 1 cut(s) 118
RsaI GTAC 3 cut(s) 102, 206, 273
RsaNI GTAC 3 cut(s) 101, 205, 272
SapI GCTCTTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 32
SatI GCNGC 1 cut(s) 67
ScaI AGTACT 1 cut(s) 273
SchI GAGTC 1 cut(s) 118
SgeI CNNG 8 cut(s) 40, 58, 119, 125, 160, 179, 213, 293
Sse9I AATT 1 cut(s) 259
SsiI CCGC 1 cut(s) 11
TaaI ACNGT 2 cut(s) 248, 271
TasI AATT 1 cut(s) 259
TatI WGTACW 2 cut(s) 100, 271
Tru1I TTAA 1 cut(s) 32
Tru9I TTAA 1 cut(s) 32
TseI GCWGC 1 cut(s) 66
TspDTI ATGAA 2 cut(s) 253, 255
TspGWI ACGGA 1 cut(s) 124
Van91I CCANNNNNTGG 1 cut(s) 52
XagI CCTNNNNNAGG 1 cut(s) 32
XmiI GTMKAC 1 cut(s) 176
ZrmI AGTACT 1 cut(s) 273
Zsp2I ATGCAT 1 cut(s) 80
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.