Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012753

Physical Location & Seq

Genomic Coordinates Reverse (-)

9674988 .. 9676316

Gene Structure 1329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g14210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGGACGTTTCTGGTCGATTTACGATCTGGGTGTTTACCATTTTGTTGATTTTTGAATCCGGATATGGGTTTTACCTTCCGGGTAGTTACCCTCACAAGTACCATGTTGGGGACAACTTAGGGGTGAAAGTGAATTCTCTGACTTCCATTGATACCGAGCTACCCTATAGCTATTACAGTCTCCCCTTTTGTCAGCCCCCAGATGGTGTTAAGGACAGTGCCGAGAATCTCGGTGAGTTCCTCATGGGGGACCGCATTGAGAGCTCTCCATATCGATTTAAGATGCATACCAATGAGACTGAGATCTTCTTGTGTCAGACGGATCCGTTGTCGGCGGATCAGTTCAGTCTCTTGAAGAAGAGGATTGATGAGATGTATCAGGTCAATCTGATTCTTGATAATTTGCCTGCAATCCGATATACCAAGAAGGAGGGATTTTTGTTGCGGTGGACTGGGTATCCTGTGGGAATTAAGGTTAAGGATGTGTACTACGTGTTTAACCATTTGAAGTTTAAGGTGCTTGTTCATAAGTATGAAGAGCCCAATGTAGCACGTGTGATGGGTACTGGCGAGGGGGCGGAGGTGATCCCAACAATTGCTAAATCAGATTCAGATGAGCCCGGTTATATCATTGTTGGGTTTGAGGTGATACCTTGCAGTTTCGTTCACAATGTGGATTCTGTGAAGAAGTTGAATATGTATGAAAAGTACCCTGCTAAGATCCTTTGTGATCCCACCACTGTGGCAATGCCGATTAATGAAAAGCAGTCAGTTGTATTCACTTATGAGGTTGAATTTGAGGAAAGTGACATCAAGTGGCCCTCACGGTGGGATGCTTATCTGAAGATGGAGGGAGCCAAAGTCCATTGGTTCTCTATTCTCAATTCTCTGATGGTGATTACTTTCCTTGCTGGTATTGTCCTTGTGATCTTTTTGAGAACTGTTCGGCGGGATCTAACTCGTTATGAAGAGCTTGACAAAGAGGCTCAAGCACAGATGAATGAGGAGTTGTCTGGCTGGAAGCTTGTTGTAGGGGATGTTTTCCGTGCTCCAAGCAACCCTGCCCTGTTGTGTATAATGGTTGGTGATGGGGTTCAGATCCTTGGGATGGCAGTGGTGACCATACTCTTTGCTGCTCTAGGGTTCATGTCGCCTGCTTCTCGTGGGACACTTATCACAGGGATGCTGTTTTTCTTTATGATCCTTGTTGTTGCAGCTGGTTATGTTGCTGTTCGTCTTTGGAGGACAATTGGCTGTGGATCGATCAAAAGGGATGGGTCTCGGTCTCATGGAAGGTTGCTTGTTTCTTCCCCGGAATTGCCTTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0008150 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0060341 GO:0065007 GO:0070201 GO:0070861 GO:0070863 GO:0090087 GO:0090316 GO:0097708 GO:0098791 GO:1903827 GO:1903829 GO:1904951 GO:2000008 GO:2000010

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

443

Amino Acids

49.98

Weight (kDa)

5.84

Isoelectric Point (pI)

41.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EMP70	PF02990	55 - 422	6.9e-101	Endomembrane protein 70

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0012753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35160 AT5G35160 AT5G35160 AT5G35160
malus_domestica	MD02G1012600.v1.1 MD15G1158400.v1.1
prunus_persica	Prupe.7G253600_v2.0.a1
pyrus_communis	pycom02g01180 pycom15g14210
rosa_chinensis	RchiOBHm_Chr2g0086541
rosa_laevigata	RLG00000015765
rosa_multiflora	Rmu_co8340319.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154460
rosa_samantha	Rh2AG018700 Rh2BG018300 Rh2CG019200 Rh2DG020000
rosa_wichuraiana	Rw2G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	59
AciI	CCGC	5 cut(s)	253, 335, 445, 578, 949
AcsI	RAATTY	2 cut(s)	133, 794
AcuI	CTGAAG	1 cut(s)	863
AcvI	CACGTG	1 cut(s)	554
AdeI	CACNNNGTG	1 cut(s)	673
AfaI	GTAC	4 cut(s)	101, 488, 565, 710
AfiI	CCNNNNNNNGG	6 cut(s)	66, 109, 203, 247, 828, 1108
AflIII	ACRYGT	2 cut(s)	492, 553
AgsI	TTSAA	5 cut(s)	56, 355, 508, 694, 794
AleI	CACNNNNGTG	1 cut(s)	740
AluBI	AGCT	6 cut(s)	160, 171, 264, 973, 1024, 1217
AluI	AGCT	6 cut(s)	160, 171, 264, 973, 1024, 1217
Alw21I	GWGCWC	2 cut(s)	266, 1051
Alw26I	GTCTC	5 cut(s)	185, 290, 353, 1284, 1290
Aor13HI	TCCGGA	1 cut(s)	59
AoxI	GGCC	1 cut(s)	818
ApeKI	GCWGC	2 cut(s)	1133, 1214
ApoI	RAATTY	2 cut(s)	133, 794
AseI	ATTAAT	1 cut(s)	756
AspS9I	GGNCC	2 cut(s)	250, 819
AsuC2I	CCSGG	3 cut(s)	81, 621, 1313
AsuHPI	GGTGA	7 cut(s)	136, 245, 595, 658, 907, 1097, 1129
AvaII	GGWCC	1 cut(s)	250
BamHI	GGATCC	1 cut(s)	322
BanII	GRGCYC	3 cut(s)	266, 543, 621
BauI	CACGAG	1 cut(s)	1161
BbrPI	CACGTG	1 cut(s)	554
Bbv12I	GWGCWC	2 cut(s)	266, 1051
BbvI	GCAGC	2 cut(s)	1120, 1226
BccI	CCATC	7 cut(s)	197, 553, 841, 886, 1082, 1102, 1268
BciVI	GTATCC	1 cut(s)	468
BcnI	CCSGG	3 cut(s)	81, 621, 1313
BcoDI	GTCTC	5 cut(s)	185, 290, 353, 1284, 1290
BfaI	CTAG	1 cut(s)	1139
BfmI	CTRYAG	1 cut(s)	166
BfuI	GTATCC	1 cut(s)	468
BglII	AGATCT	1 cut(s)	303
BisI	GCNGC	2 cut(s)	1134, 1215
BlsI	GCNGC	2 cut(s)	1135, 1216
Bme1390I	CCNGG	3 cut(s)	81, 621, 1313
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	250, 819
BmiI	GGNNCC	3 cut(s)	251, 324, 856
BmrFI	CCNGG	3 cut(s)	81, 621, 1313
BmrI	ACTGGG	1 cut(s)	462
BmsI	GCATC	3 cut(s)	273, 823, 1173
BmuI	ACTGGG	1 cut(s)	462
BpuEI	CTTGAG	1 cut(s)	972
BpuMI	CCSGG	3 cut(s)	81, 621, 1313
Bsa29I	ATCGAT	2 cut(s)	274, 1262
BsaAI	YACGTR	2 cut(s)	493, 554
BsaBI	GATNNNNATC	1 cut(s)	837
BsaI	GGTCTC	2 cut(s)	1284, 1290
BsaJI	CCNNGG	2 cut(s)	1102, 1311
BsaWI	WCCGGW	1 cut(s)	59
BsaXI	ACNNNNNCTCC	2 cut(s)	846, 876
Bsc4I	CCNNNNNNNGG	6 cut(s)	66, 109, 203, 247, 828, 1108
Bse1I	ACTGG	2 cut(s)	457, 571
Bse3DI	GCAATG	1 cut(s)	753
Bse8I	GATNNNNATC	1 cut(s)	837
BseAI	TCCGGA	1 cut(s)	59
BseCI	ATCGAT	2 cut(s)	274, 1262
BseDI	CCNNGG	2 cut(s)	1102, 1311
BseGI	GGATG	6 cut(s)	487, 838, 1042, 1113, 1188, 1279
BseJI	GATNNNNATC	1 cut(s)	837
BseLI	CCNNNNNNNGG	6 cut(s)	66, 109, 203, 247, 828, 1108
BseMI	GCAATG	1 cut(s)	753
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	2 cut(s)	457, 571
BseRI	GAGGAG	1 cut(s)	1019
BseXI	GCAGC	2 cut(s)	1120, 1226
BshFI	GGCC	1 cut(s)	820
BshVI	ATCGAT	2 cut(s)	274, 1262
BsiHKAI	GWGCWC	2 cut(s)	266, 1051
BsiSI	CCGG	4 cut(s)	60, 80, 621, 1313
BslFI	GGGAC	3 cut(s)	125, 263, 1180
BslI	CCNNNNNNNGG	6 cut(s)	66, 109, 203, 247, 828, 1108
BsmAI	GTCTC	5 cut(s)	185, 290, 353, 1284, 1290
BsmFI	GGGAC	3 cut(s)	125, 263, 1180
BsnI	GGCC	1 cut(s)	820
Bso31I	GGTCTC	2 cut(s)	1284, 1290
Bsp1286I	GDGCHC	4 cut(s)	266, 543, 621, 1051
Bsp13I	TCCGGA	1 cut(s)	59
BspACI	CCGC	5 cut(s)	253, 335, 445, 578, 949
BspANI	GGCC	1 cut(s)	820
BspCNI	CTCAG	1 cut(s)	292
BspDI	ATCGAT	2 cut(s)	274, 1262
BspEI	TCCGGA	1 cut(s)	59
BspLI	GGNNCC	3 cut(s)	251, 324, 856
BspQI	GCTCTTC	2 cut(s)	531, 963
BspTNI	GGTCTC	2 cut(s)	1284, 1290
BsrDI	GCAATG	1 cut(s)	753
BsrI	ACTGG	2 cut(s)	457, 571
BssECI	CCNNGG	2 cut(s)	1102, 1311
BssSI	CACGAG	1 cut(s)	1161
BssT1I	CCWWGG	1 cut(s)	1102
Bst2BI	CACGAG	1 cut(s)	1161
Bst4CI	ACNGT	5 cut(s)	179, 218, 742, 828, 943
Bst6I	CTCTTC	3 cut(s)	353, 531, 963
BstBAI	YACGTR	2 cut(s)	493, 554
BstC8I	GCNNGC	2 cut(s)	408, 1155
BstDEI	CTNAG	3 cut(s)	118, 300, 717
BstEII	GGTNACC	1 cut(s)	1117
BstF5I	GGATG	6 cut(s)	487, 838, 1042, 1113, 1188, 1279
BstMAI	GTCTC	5 cut(s)	185, 290, 353, 1284, 1290
BstMWI	GCNNNNNNNGC	1 cut(s)	261
BstPI	GGTNACC	1 cut(s)	1117
BstSCI	CCNGG	3 cut(s)	79, 619, 1311
BstSFI	CTRYAG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	1120, 1226
BstX2I	RGATCY	5 cut(s)	303, 322, 720, 952, 1098
BstXI	CCANNNNNNTGG	1 cut(s)	742
BstYI	RGATCY	5 cut(s)	303, 322, 720, 952, 1098
Bsu15I	ATCGAT	2 cut(s)	274, 1262
BsuI	GTATCC	1 cut(s)	468
BsuRI	GGCC	1 cut(s)	820
BsuTUI	ATCGAT	2 cut(s)	274, 1262
BtsCI	GGATG	6 cut(s)	487, 838, 1042, 1113, 1188, 1279
BtsI	GCAGTG	1 cut(s)	1119
BtsIMutI	CAGTG	3 cut(s)	223, 738, 1119
Cac8I	GCNNGC	2 cut(s)	408, 1155
Cfr13I	GGNCC	2 cut(s)	250, 819
ClaI	ATCGAT	2 cut(s)	274, 1262
Csp6I	GTAC	4 cut(s)	100, 487, 564, 709
CviAII	CATG	4 cut(s)	104, 244, 1147, 1289
CviQI	GTAC	4 cut(s)	100, 487, 564, 709
DdeI	CTNAG	3 cut(s)	118, 300, 717
DraIII	CACNNNGTG	1 cut(s)	673
Eam1104I	CTCTTC	3 cut(s)	353, 531, 963
EarI	CTCTTC	3 cut(s)	353, 531, 963
EciI	GGCGGA	2 cut(s)	350, 593
Ecl136II	GAGCTC	1 cut(s)	264
Eco130I	CCWWGG	1 cut(s)	1102
Eco24I	GRGCYC	3 cut(s)	266, 543, 621
Eco31I	GGTCTC	2 cut(s)	1284, 1290
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	264
Eco57I	CTGAAG	1 cut(s)	863
Eco72I	CACGTG	1 cut(s)	554
Eco91I	GGTNACC	1 cut(s)	1117
EcoICRI	GAGCTC	1 cut(s)	264
EcoO65I	GGTNACC	1 cut(s)	1117
EcoRI	GAATTC	1 cut(s)	133
EcoT14I	CCWWGG	1 cut(s)	1102
EcoT22I	ATGCAT	1 cut(s)	288
EcoT38I	GRGCYC	3 cut(s)	266, 543, 621
ErhI	CCWWGG	1 cut(s)	1102
FaeI	CATG	4 cut(s)	107, 247, 1150, 1292
FaqI	GGGAC	3 cut(s)	125, 263, 1180
FatI	CATG	4 cut(s)	103, 243, 1146, 1288
FauI	CCCGC	1 cut(s)	942
Fnu4HI	GCNGC	2 cut(s)	1134, 1215
FokI	GGATG	6 cut(s)	494, 845, 1049, 1120, 1195, 1286
FriOI	GRGCYC	3 cut(s)	266, 543, 621
Fsp4HI	GCNGC	2 cut(s)	1134, 1215
FspBI	CTAG	1 cut(s)	1139
GluI	GCNGC	2 cut(s)	1134, 1215
HaeIII	GGCC	1 cut(s)	820
HapII	CCGG	4 cut(s)	60, 80, 621, 1313
Hin1II	CATG	4 cut(s)	107, 247, 1150, 1292
HindIII	AAGCTT	1 cut(s)	1022
HinfI	GANTC	5 cut(s)	56, 226, 391, 608, 677
HpaII	CCGG	4 cut(s)	60, 80, 621, 1313
HphI	GGTGA	7 cut(s)	136, 245, 595, 658, 907, 1097, 1129
Hpy166II	GTNNAC	4 cut(s)	36, 450, 487, 667
Hpy188I	TCNGA	9 cut(s)	141, 318, 390, 416, 607, 613, 843, 891, 1098
Hpy188III	TCNNGA	3 cut(s)	60, 352, 395
Hpy8I	GTNNAC	4 cut(s)	36, 450, 487, 667
HpyAV	CCTTC	3 cut(s)	86, 421, 1287
HpyCH4III	ACNGT	5 cut(s)	179, 218, 742, 828, 943
HpyCH4IV	ACGT	3 cut(s)	6, 492, 553
HpyCH4V	TGCA	4 cut(s)	286, 410, 657, 1214
HpyF10VI	GCNNNNNNNGC	1 cut(s)	261
HpyF3I	CTNAG	3 cut(s)	118, 300, 717
HpySE526I	ACGT	3 cut(s)	6, 492, 553
Hsp92II	CATG	4 cut(s)	107, 247, 1150, 1292
Kpn2I	TCCGGA	1 cut(s)	59
LguI	GCTCTTC	2 cut(s)	531, 963
LmnI	GCTCC	2 cut(s)	854, 1054
Lsp1109I	GCAGC	2 cut(s)	1120, 1226
LweI	GCATC	3 cut(s)	273, 823, 1173
MaeI	CTAG	1 cut(s)	1139
MaeII	ACGT	3 cut(s)	6, 492, 553
MaeIII	GTNAC	3 cut(s)	86, 806, 1117
MboII	GAAGA	8 cut(s)	298, 367, 370, 548, 697, 856, 980, 1299
MfeI	CAATTG	2 cut(s)	594, 1248
MflI	RGATCY	5 cut(s)	303, 322, 720, 952, 1098
MhlI	GDGCHC	4 cut(s)	266, 543, 621, 1051
MluCI	AATT	8 cut(s)	133, 400, 468, 594, 794, 883, 1248, 1316
Mph1103I	ATGCAT	1 cut(s)	288
MroI	TCCGGA	1 cut(s)	59
MseI	TTAA	7 cut(s)	210, 279, 471, 477, 498, 513, 756
MslI	CAYNNNNRTG	4 cut(s)	291, 531, 740, 1181
MspA1I	CMGCKG	1 cut(s)	1217
MspI	CCGG	4 cut(s)	60, 80, 621, 1313
MspR9I	CCNGG	3 cut(s)	81, 621, 1313
MunI	CAATTG	2 cut(s)	594, 1248
MwoI	GCNNNNNNNGC	1 cut(s)	261
NciI	CCSGG	3 cut(s)	81, 621, 1313
NlaIII	CATG	4 cut(s)	107, 247, 1150, 1292
NlaIV	GGNNCC	3 cut(s)	251, 324, 856
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	2 cut(s)	806, 1117
NsiI	ATGCAT	1 cut(s)	288
OliI	CACNNNNGTG	1 cut(s)	740
PciSI	GCTCTTC	2 cut(s)	531, 963
PfeI	GAWTC	5 cut(s)	56, 226, 391, 608, 677
PkrI	GCNGC	2 cut(s)	1135, 1216
PmaCI	CACGTG	1 cut(s)	554
PmlI	CACGTG	1 cut(s)	554
Ppu21I	YACGTR	2 cut(s)	493, 554
PshBI	ATTAAT	1 cut(s)	756
Psp124BI	GAGCTC	1 cut(s)	266
PspCI	CACGTG	1 cut(s)	554
PspEI	GGTNACC	1 cut(s)	1117
PspN4I	GGNNCC	3 cut(s)	251, 324, 856
PspPI	GGNCC	2 cut(s)	250, 819
PsuI	RGATCY	5 cut(s)	303, 322, 720, 952, 1098
PvuII	CAGCTG	1 cut(s)	1217
RsaI	GTAC	4 cut(s)	101, 488, 565, 710
RsaNI	GTAC	4 cut(s)	100, 487, 564, 709
RseI	CAYNNNNRTG	4 cut(s)	291, 531, 740, 1181
SacI	GAGCTC	1 cut(s)	266
SapI	GCTCTTC	2 cut(s)	531, 963
SaqAI	TTAA	7 cut(s)	210, 279, 471, 477, 498, 513, 756
SatI	GCNGC	2 cut(s)	1134, 1215
Sau96I	GGNCC	2 cut(s)	250, 819
ScrFI	CCNGG	3 cut(s)	81, 621, 1313
SduI	GDGCHC	4 cut(s)	266, 543, 621, 1051
SfaNI	GCATC	3 cut(s)	273, 823, 1173
SfcI	CTRYAG	1 cut(s)	166
SinI	GGWCC	1 cut(s)	250
SmiMI	CAYNNNNRTG	4 cut(s)	291, 531, 740, 1181
SmlI	CTYRAG	1 cut(s)	987
SmoI	CTYRAG	1 cut(s)	987
Sse9I	AATT	8 cut(s)	133, 400, 468, 594, 794, 883, 1248, 1316
SsiI	CCGC	5 cut(s)	253, 335, 445, 578, 949
SspMI	CTAG	1 cut(s)	1139
SstI	GAGCTC	1 cut(s)	266
StyD4I	CCNGG	3 cut(s)	79, 619, 1311
StyI	CCWWGG	1 cut(s)	1102
TaaI	ACNGT	5 cut(s)	179, 218, 742, 828, 943
TaiI	ACGT	3 cut(s)	9, 495, 556
TaqI	TCGA	3 cut(s)	16, 274, 1262
TaqII	GACCGA	1 cut(s)	1272
TasI	AATT	8 cut(s)	133, 400, 468, 594, 794, 883, 1248, 1316
TatI	WGTACW	1 cut(s)	486
TfiI	GAWTC	5 cut(s)	56, 226, 391, 608, 677
Tru1I	TTAA	7 cut(s)	210, 279, 471, 477, 498, 513, 756
Tru9I	TTAA	7 cut(s)	210, 279, 471, 477, 498, 513, 756
TscAI	CASTG	3 cut(s)	223, 745, 1119
TseFI	GTSAC	2 cut(s)	806, 1117
TseI	GCWGC	2 cut(s)	1133, 1214
Tsp45I	GTSAC	2 cut(s)	806, 1117
TspDTI	ATGAA	7 cut(s)	515, 549, 717, 774, 981, 1013, 1135
TspGWI	ACGGA	3 cut(s)	315, 335, 1034
TspRI	CASTG	3 cut(s)	223, 745, 1119
VpaK11BI	GGWCC	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	756
XapI	RAATTY	2 cut(s)	133, 794
XspI	CTAG	1 cut(s)	1139
Zsp2I	ATGCAT	1 cut(s)	288

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.