Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8340319.1

Orthogroup ID

OG0012753

Physical Location & Seq

Genomic Coordinates Forward (+)

5 .. 1005

Gene Structure 1001 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8340319.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1001 bp

atgggtactggtgatggggcagaggtgatcccaacggttgcaaaggcagattcagatgtgcccgggtggatcattgtagggtttgaggtgataccttgcagttccacgcataatgtagatgctgtgaagaatttgaacatgtatgacaagtaccctactgctattaaatgtgatccaacgtctgtggcaatggctgttgatgataagaagccaattatcttctcatatgaggttgaattcgaggagagtgacatcaagtggccttcgaggtgggatgcttatttgaagatggagggatctaaagtccattggttctccattctcaattctctgatggtgattactttccttgctggtattgtcctcgtgatctttttgaggactgttaggcgggacctgacacggtatgaagagcttgacaaggaggctcaagcacagatgaatgaggagttgtctggctggaagcttgttgttggggatgttttccgtgctccagaccatcctgccctgctgtgcataatggttggtgatggggttcagatcctcgggatggcagtggttaccatattgtttgctgctcttgggttcatgtcccctgcttcccgtggaacacttattacaggtatgctgtttttctacatgatccttggtattgcagctggttatgttgctgttcgtctttggaggacaattggctgtggagataaaacgggatgggtttcagtctcatggaaggtttcctgtttcttccctggaattgcctttttaattctgacgaccctgaatttcctattgtggggtagtcacagcacaggagccattccattttctctatttgttattctcatcttgctctggttctgcatttctgttccccttacactaattggtggatacctcggggccaaggcacctcacattgagttccctgttcgtaccaatcaaattcccagggaaatcccagcacagaaatacccatcctggctgttggttcttggtgc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005769 GO:0005794 GO:0005802 GO:0008150 GO:0012505 GO:0016020 GO:0016021 GO:0031224 GO:0031410 GO:0031982 GO:0031984 GO:0032386 GO:0032388 GO:0032879 GO:0032880 GO:0033157 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0050789 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0060341 GO:0065007 GO:0070201 GO:0070861 GO:0070863 GO:0090087 GO:0090316 GO:0097708 GO:0098791 GO:1903827 GO:1903829 GO:1904951 GO:2000008 GO:2000010

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EMP70

Protein Analysis

334

Amino Acids

36.91

Weight (kDa)

5.77

Isoelectric Point (pI)

36.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012753)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G35160 AT5G35160 AT5G35160 AT5G35160
malus_domestica	MD02G1012600.v1.1 MD15G1158400.v1.1
prunus_persica	Prupe.7G253600_v2.0.a1
pyrus_communis	pycom02g01180 pycom15g14210
rosa_chinensis	RchiOBHm_Chr2g0086541
rosa_laevigata	RLG00000015765
rosa_multiflora	Rmu_co8340319.1_g000001
rosa_roxburghii	Rroxscaffold_2G00154460
rosa_samantha	Rh2AG018700 Rh2BG018300 Rh2CG019200 Rh2DG020000
rosa_wichuraiana	Rw2G001570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	910
AciI	CCGC	1 cut(s)	391
AclWI	GGATC	6 cut(s)	22, 77, 167, 304, 535, 637
AcsI	RAATTY	4 cut(s)	130, 236, 784, 945
AfaI	GTAC	3 cut(s)	7, 152, 937
AfiI	CCNNNNNNNGG	2 cut(s)	550, 796
AflIII	ACRYGT	1 cut(s)	138
AgsI	TTSAA	3 cut(s)	136, 236, 286
AjnI	CCWGG	3 cut(s)	751, 950, 980
AluBI	AGCT	3 cut(s)	415, 466, 659
AluI	AGCT	3 cut(s)	415, 466, 659
Alw21I	GWGCWC	1 cut(s)	493
Alw26I	GTCTC	1 cut(s)	730
AlwI	GGATC	6 cut(s)	22, 77, 167, 304, 535, 637
Ama87I	CYCGRG	3 cut(s)	62, 545, 899
AoxI	GGCC	2 cut(s)	260, 903
ApeKI	GCWGC	2 cut(s)	575, 656
ApoI	RAATTY	4 cut(s)	130, 236, 784, 945
AspS9I	GGNCC	2 cut(s)	394, 903
AsuC2I	CCSGG	2 cut(s)	63, 64
AsuHPI	GGTGA	5 cut(s)	23, 37, 100, 349, 539
AvaI	CYCGRG	3 cut(s)	62, 545, 899
AvaII	GGWCC	1 cut(s)	394
BaeGI	GKGCMC	1 cut(s)	63
BanI	GGYRCC	1 cut(s)	910
BauI	CACGAG	1 cut(s)	365
Bbv12I	GWGCWC	1 cut(s)	493
BbvI	GCAGC	2 cut(s)	562, 668
BccI	CCATC	8 cut(s)	8, 283, 328, 507, 524, 544, 708, 985
BciT130I	CCWGG	3 cut(s)	753, 952, 982
BciVI	GTATCC	1 cut(s)	887
BcnI	CCSGG	2 cut(s)	63, 64
BcoDI	GTCTC	1 cut(s)	730
BfuI	GTATCC	1 cut(s)	887
BisI	GCNGC	2 cut(s)	576, 657
BlsI	GCNGC	2 cut(s)	577, 658
Bme1390I	CCNGG	5 cut(s)	63, 64, 753, 952, 982
Bme18I	GGWCC	1 cut(s)	394
BmeT110I	CYCGRG	3 cut(s)	62, 545, 899
BmgT120I	GGNCC	2 cut(s)	394, 903
BmiI	GGNNCC	4 cut(s)	395, 817, 904, 912
BmrFI	CCNGG	5 cut(s)	63, 64, 753, 952, 982
BmsI	GCATC	2 cut(s)	109, 265
BpmI	CTGGAG	1 cut(s)	477
BpuEI	CTTGAG	1 cut(s)	414
BpuMI	CCSGG	2 cut(s)	63, 64
BsaJI	CCNNGG	9 cut(s)	62, 544, 604, 646, 751, 898, 906, 950, 951
Bsc4I	CCNNNNNNNGG	2 cut(s)	550, 796
Bse1I	ACTGG	1 cut(s)	13
Bse3DI	GCAATG	1 cut(s)	195
BseBI	CCWGG	3 cut(s)	753, 952, 982
BseDI	CCNNGG	9 cut(s)	62, 544, 604, 646, 751, 898, 906, 950, 951
BseGI	GGATG	6 cut(s)	280, 484, 499, 555, 719, 977
BseLI	CCNNNNNNNGG	2 cut(s)	550, 796
BseMI	GCAATG	1 cut(s)	195
BseNI	ACTGG	1 cut(s)	13
BseRI	GAGGAG	2 cut(s)	257, 461
BseSI	GKGCMC	1 cut(s)	63
BseXI	GCAGC	2 cut(s)	562, 668
BseYI	CCCAGC	1 cut(s)	961
BshFI	GGCC	2 cut(s)	262, 905
BshNI	GGYRCC	1 cut(s)	910
BsiHKAI	GWGCWC	1 cut(s)	493
BsiHKCI	CYCGRG	3 cut(s)	62, 545, 899
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	2 cut(s)	407, 577
BslI	CCNNNNNNNGG	2 cut(s)	550, 796
BsmAI	GTCTC	1 cut(s)	730
BsmFI	GGGAC	2 cut(s)	407, 577
BsnI	GGCC	2 cut(s)	262, 905
BsoBI	CYCGRG	3 cut(s)	62, 545, 899
Bsp1286I	GDGCHC	2 cut(s)	63, 493
Bsp143I	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
BspACI	CCGC	1 cut(s)	391
BspANI	GGCC	2 cut(s)	262, 905
BspLI	GGNNCC	4 cut(s)	395, 817, 904, 912
BspPI	GGATC	6 cut(s)	22, 77, 167, 304, 535, 637
BspQI	GCTCTTC	1 cut(s)	405
BspT107I	GGYRCC	1 cut(s)	910
BsrDI	GCAATG	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	13
BssECI	CCNNGG	9 cut(s)	62, 544, 604, 646, 751, 898, 906, 950, 951
BssMI	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
BssSI	CACGAG	1 cut(s)	365
BssT1I	CCWWGG	2 cut(s)	646, 906
Bst2BI	CACGAG	1 cut(s)	365
Bst2UI	CCWGG	3 cut(s)	753, 952, 982
Bst4CI	ACNGT	3 cut(s)	37, 385, 405
Bst6I	CTCTTC	1 cut(s)	405
BstDSI	CCRYGG	1 cut(s)	604
BstEII	GGTNACC	1 cut(s)	559
BstF5I	GGATG	6 cut(s)	280, 484, 499, 555, 719, 977
BstKTI	GATC	7 cut(s)	30, 72, 175, 299, 372, 543, 645
BstMAI	GTCTC	1 cut(s)	730
BstMBI	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
BstNI	CCWGG	3 cut(s)	753, 952, 982
BstNSI	RCATGY	1 cut(s)	142
BstPI	GGTNACC	1 cut(s)	559
BstSCI	CCNGG	5 cut(s)	61, 62, 751, 950, 980
BstSLI	GKGCMC	1 cut(s)	63
BstV1I	GCAGC	2 cut(s)	562, 668
BstX2I	RGATCY	2 cut(s)	296, 540
BstYI	RGATCY	2 cut(s)	296, 540
BsuI	GTATCC	1 cut(s)	887
BsuRI	GGCC	2 cut(s)	262, 905
BtgI	CCRYGG	1 cut(s)	604
BtsCI	GGATG	6 cut(s)	280, 484, 499, 555, 719, 977
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	1 cut(s)	561
Cfr13I	GGNCC	2 cut(s)	394, 903
Cfr9I	CCCGGG	1 cut(s)	62
Csp6I	GTAC	3 cut(s)	6, 151, 936
CspCI	CAANNNNNGTGG	2 cut(s)	165, 200
CviAII	CATG	4 cut(s)	139, 589, 640, 729
CviQI	GTAC	3 cut(s)	6, 151, 936
DpnI	GATC	7 cut(s)	29, 71, 174, 298, 371, 542, 644
DpnII	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
Eam1104I	CTCTTC	1 cut(s)	405
EarI	CTCTTC	1 cut(s)	405
Eco130I	CCWWGG	2 cut(s)	646, 906
Eco47I	GGWCC	1 cut(s)	394
Eco88I	CYCGRG	3 cut(s)	62, 545, 899
Eco91I	GGTNACC	1 cut(s)	559
EcoO109I	RGGNCCY	1 cut(s)	394
EcoO65I	GGTNACC	1 cut(s)	559
EcoRI	GAATTC	1 cut(s)	236
EcoRII	CCWGG	3 cut(s)	751, 950, 980
EcoT14I	CCWWGG	2 cut(s)	646, 906
ErhI	CCWWGG	2 cut(s)	646, 906
FaeI	CATG	4 cut(s)	142, 592, 643, 732
FaqI	GGGAC	2 cut(s)	407, 577
FatI	CATG	4 cut(s)	138, 588, 639, 728
FauI	CCCGC	1 cut(s)	384
FauNDI	CATATG	1 cut(s)	226
Fnu4HI	GCNGC	2 cut(s)	576, 657
FokI	GGATG	6 cut(s)	287, 486, 491, 562, 726, 964
Fsp4HI	GCNGC	2 cut(s)	576, 657
GluI	GCNGC	2 cut(s)	576, 657
GsaI	CCCAGC	1 cut(s)	965
GsuI	CTGGAG	1 cut(s)	477
HaeIII	GGCC	2 cut(s)	262, 905
HapII	CCGG	1 cut(s)	63
Hin1II	CATG	4 cut(s)	142, 592, 643, 732
HindIII	AAGCTT	1 cut(s)	464
HinfI	GANTC	1 cut(s)	50
HpaII	CCGG	1 cut(s)	63
HphI	GGTGA	5 cut(s)	23, 37, 100, 349, 539
Hpy188I	TCNGA	4 cut(s)	55, 333, 540, 774
Hpy188III	TCNNGA	3 cut(s)	367, 494, 547
HpyAV	CCTTC	2 cut(s)	273, 727
HpyCH4III	ACNGT	3 cut(s)	37, 385, 405
HpyCH4IV	ACGT	1 cut(s)	179
HpyCH4V	TGCA	5 cut(s)	41, 99, 516, 656, 864
HpySE526I	ACGT	1 cut(s)	179
Hsp92II	CATG	4 cut(s)	142, 592, 643, 732
Kzo9I	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
LguI	GCTCTTC	1 cut(s)	405
LmnI	GCTCC	2 cut(s)	496, 815
Lsp1109I	GCAGC	2 cut(s)	562, 668
LweI	GCATC	2 cut(s)	109, 265
MaeII	ACGT	1 cut(s)	179
MaeIII	GTNAC	3 cut(s)	248, 559, 803
MalI	GATC	7 cut(s)	29, 71, 174, 298, 371, 542, 644
MboI	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
MboII	GAAGA	5 cut(s)	139, 211, 298, 422, 739
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	2 cut(s)	296, 540
MhlI	GDGCHC	2 cut(s)	63, 493
MmeI	TCCRAC	1 cut(s)	200
MseI	TTAA	2 cut(s)	165, 767
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	5 cut(s)	63, 64, 753, 952, 982
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	3 cut(s)	753, 952, 982
NciI	CCSGG	2 cut(s)	63, 64
NdeI	CATATG	1 cut(s)	226
NdeII	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
NlaIII	CATG	4 cut(s)	142, 592, 643, 732
NlaIV	GGNNCC	4 cut(s)	395, 817, 904, 912
NmuCI	GTSAC	2 cut(s)	248, 803
NspI	RCATGY	1 cut(s)	142
PasI	CCCWGGG	1 cut(s)	951
PciI	ACATGT	1 cut(s)	138
PciSI	GCTCTTC	1 cut(s)	405
PfeI	GAWTC	1 cut(s)	50
PkrI	GCNGC	2 cut(s)	577, 658
PpuMI	RGGWCCY	1 cut(s)	394
PscI	ACATGT	1 cut(s)	138
Psp5II	RGGWCCY	1 cut(s)	394
Psp6I	CCWGG	3 cut(s)	751, 950, 980
PspEI	GGTNACC	1 cut(s)	559
PspFI	CCCAGC	1 cut(s)	961
PspGI	CCWGG	3 cut(s)	751, 950, 980
PspN4I	GGNNCC	4 cut(s)	395, 817, 904, 912
PspPI	GGNCC	2 cut(s)	394, 903
PspPPI	RGGWCCY	1 cut(s)	394
PsrI	GAACNNNNNNTAC	2 cut(s)	601, 633
PsuI	RGATCY	2 cut(s)	296, 540
PvuII	CAGCTG	1 cut(s)	659
RsaI	GTAC	3 cut(s)	7, 152, 937
RsaNI	GTAC	3 cut(s)	6, 151, 936
SapI	GCTCTTC	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	165, 767
SatI	GCNGC	2 cut(s)	576, 657
Sau3AI	GATC	7 cut(s)	27, 69, 172, 296, 369, 540, 642
Sau96I	GGNCC	2 cut(s)	394, 903
ScrFI	CCNGG	5 cut(s)	63, 64, 753, 952, 982
SduI	GDGCHC	2 cut(s)	63, 493
SfaNI	GCATC	2 cut(s)	109, 265
SinI	GGWCC	1 cut(s)	394
SmaI	CCCGGG	1 cut(s)	64
SmlI	CTYRAG	1 cut(s)	429
SmoI	CTYRAG	1 cut(s)	429
SsiI	CCGC	1 cut(s)	391
StyD4I	CCNGG	5 cut(s)	61, 62, 751, 950, 980
StyI	CCWWGG	2 cut(s)	646, 906
TaaI	ACNGT	3 cut(s)	37, 385, 405
TaiI	ACGT	1 cut(s)	182
TaqI	TCGA	2 cut(s)	240, 266
TfiI	GAWTC	1 cut(s)	50
Tru1I	TTAA	2 cut(s)	165, 767
Tru9I	TTAA	2 cut(s)	165, 767
TscAI	CASTG	1 cut(s)	561
TseFI	GTSAC	2 cut(s)	248, 803
TseI	GCWGC	2 cut(s)	575, 656
Tsp45I	GTSAC	2 cut(s)	248, 803
TspDTI	ATGAA	3 cut(s)	423, 455, 577
TspGWI	ACGGA	1 cut(s)	476
TspMI	CCCGGG	1 cut(s)	62
TspRI	CASTG	1 cut(s)	561
VpaK11BI	GGWCC	1 cut(s)	394
XapI	RAATTY	4 cut(s)	130, 236, 784, 945
XceI	RCATGY	1 cut(s)	142
XmaI	CCCGGG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.