pycom15g15810

Protein kinase PINOID

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
Physical Location & Seq
Reverse (-)
11018035 .. 11019779
1745 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g15810.2

Sequence Viewer

Length: 1482 bp
ATGGCAGCCATAACAACCAAAGACGATTCGGACTATGACAGCAGCTGCTCATCCATAACGGTTCCAGATTCGAGCCGGAGCTGGATGAGCAACCTGAGCTTCAGCAGCCGCCGCCAGAGCTCGGTCTCCGTTTGCTCCTCCACCACTGAAGCCTCTCTGCTTTCCTCTGCTCACAAGCCCCACAAGGCCAACCAACCTGCATGGGAAGCCATGCGGCGGCTCCGCAGCTCCAAAGGCCGAGTTGGGCTCGACCATTTTCGGCTCCTCCGCCGCCTAGGAAGCGGCGACATTGGAAATGTGTACCTTTGCCAGATAAGAAACCCGGTTGTGGGTTTGCCGCAGTGCTTTTACGCGATGAAAGTGGTTGACAGAGAAGCACTTGCTATAAGAAAGAAGCTGCACAGAGCTGAGATGGAGAAGGAGATTCTGGACATGCTCGATCACCCTTTTTTGCCTACTCTCTACGCTGAGTTTGATGCTTCTCACTACTCTTGCTTGGTTATGGAGTTTTGCCCCGGCGGCGACTTGTTCGCTGCCCGTCAACGCCTCCCCGGAAAATGCTTCAGCATCTCATCTGCTAGGTTTTACGCGGCGGAGACACTGTTAGCTCTAGAGTATCTGCACATGATGGGGAGTGGTTACAGAGACTTGAAGCCTGAAAATGTACTGGTTAGAGAGGATGGACACATCATGCTTTCAGATTTTGATCTCTCCCTCAAATGCGACGTGGTTCCAAAATTGCTAAGGCGAAAATCGGAGCTAGAATCGGACCAGAAGAGCGCAAAGAGTTCATCAATGTCGTATTGTGCTGCTGCGCCCATGCAGCCTGTGCTCTCTTGCTTCTCTGCCTCCCACAAGAAAAAGAAGGGCACAGTCACAACCATAACAGAACAAGTCGGTGCTGATAATGATGTTAATCATGATTATGATGATGATTATAAAGAGCTGAACCCGGAAATGGTGGCCGAACCAATCCACGCCCGCTCCAAGTCATTCGTGGGGACCCACGAGTACTTGGCGCCTGAGGTGATCTCAGGGCAAGGCCATGGAAGCGCGGTGGACTGGTGGACATTCGGAGTGTTTTTGTATGAAATGTTGTACGGGCGGACGCCTTTCAAAGGAGAAAACAATGAGAAAACCCTAATCAACATTCTTAAGCAGCCATTAAGGTTTCCAAGAGTTGTGGTCAGCAGCAGCAAAGAGCTTGAGGAAATGGTCAGAGTTCAAGACTTGATTAGCAAGCTACTGGTGAAGAATCCCAAGAAGAGAATTGGGAGCTTAAAGGGATCTGTCAAGATCAAAGGGCATGATTTCTTTAAGGGTGTGAATTGGGCTTTGATTAGGTCAGTTAGGCCTCCTCATGTCCCTAATAGTGATTTGCATAATAAGAATAGGAATAATCGAGTTAATTACTTGCCTAAGTTAAGCCAAAAAGAGAGGGATGAACCATTTCAGATCCCTCATCATGTTGATTATTTCTAA

Protein Analysis

494

Amino Acids

55.73

Weight (kDa)

8.95

Isoelectric Point (pI)

49.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0014314)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G26700
fragaria_vesca FvH4_1g03770
malus_domestica MD02G1036300.v1.1 MD15G1176500.v1.1
prunus_persica Prupe.7G239100_v2.0.a1
pyrus_communis pycom02g02990 pycom15g15810
rosa_chinensis RchiOBHm_Chr2g0089181
rosa_laevigata RLG00000016001
rosa_multiflora Rmu_sc0008909.1_g000007
rosa_roxburghii Rroxscaffold_2G00152180
rosa_rugosa Rorug01G0488100
rosa_samantha Rh2AG043800 Rh2BG042500 Rh2CG043800 Rh2DG042800
rosa_wichuraiana Rw2G003940

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 939
Acc36I ACCTGC 1 cut(s) 205
AccB1I GGYRCC 1 cut(s) 1018
AccBSI CCGCTC 1 cut(s) 984
AccII CGCG 3 cut(s) 353, 590, 1055
AclWI GGATC 2 cut(s) 1294, 1450
AcoI YGGCCR 1 cut(s) 963
AcuI CTGAAG 3 cut(s) 85, 168, 547
AcyI GRCGYC 2 cut(s) 1019, 1109
AfaI GTAC 4 cut(s) 302, 666, 1013, 1100
AfiI CCNNNNNNNGG 6 cut(s) 121, 216, 328, 329, 958, 1118
AflII CTTAAG 1 cut(s) 1154
AgsI TTSAA 3 cut(s) 652, 1117, 1226
AjiI CACGTC 1 cut(s) 727
Alw21I GWGCWC 2 cut(s) 122, 834
Alw26I GTCTC 3 cut(s) 130, 590, 639
AlwI GGATC 2 cut(s) 1294, 1450
AlwNI CAGNNNCTG 1 cut(s) 45
AoxI GGCC 5 cut(s) 186, 235, 963, 1042, 1352
Asp700I GAANNNNTTC 1 cut(s) 1449
AspA2I CCTAGG 1 cut(s) 274
AspLEI GCGC 4 cut(s) 782, 817, 1021, 1055
AspS9I GGNCC 2 cut(s) 769, 1002
AsuC2I CCSGG 4 cut(s) 323, 516, 552, 953
AsuHPI GGTGA 3 cut(s) 434, 1039, 1261
AvaII GGWCC 2 cut(s) 769, 1002
AvrII CCTAGG 1 cut(s) 274
AxyI CCTNAGG 1 cut(s) 1023
BaeGI GKGCMC 1 cut(s) 872
BanI GGYRCC 1 cut(s) 1018
BanII GRGCYC 2 cut(s) 122, 249
BauI CACGAG 1 cut(s) 1007
Bbv12I GWGCWC 2 cut(s) 122, 834
BccI CCATC 3 cut(s) 406, 622, 674
BcnI CCSGG 4 cut(s) 323, 516, 552, 953
BcoDI GTCTC 3 cut(s) 130, 590, 639
BfaI CTAG 4 cut(s) 275, 579, 611, 761
BfoI RGCGCY 1 cut(s) 1022
BfrI CTTAAG 1 cut(s) 1154
BfuAI ACCTGC 1 cut(s) 205
BglI GCCNNNNNGGC 1 cut(s) 519
BlnI CCTAGG 1 cut(s) 274
BmcAI AGTACT 1 cut(s) 1013
Bme1390I CCNGG 4 cut(s) 323, 516, 552, 953
Bme18I GGWCC 2 cut(s) 769, 1002
BmgBI CACGTC 1 cut(s) 727
BmgT120I GGNCC 2 cut(s) 769, 1002
BmiI GGNNCC 7 cut(s) 63, 221, 263, 732, 1003, 1004, 1020
BmrFI CCNGG 4 cut(s) 323, 516, 552, 953
BmsI GCATC 2 cut(s) 466, 576
BplI GAGNNNNNCTC 4 cut(s) 231, 263, 1016, 1048
Bpu10I CCTNAGC 2 cut(s) 95, 743
BpuEI CTTGAG 1 cut(s) 1226
BpuMI CCSGG 4 cut(s) 323, 516, 552, 953
BsaBI GATNNNNATC 2 cut(s) 705, 915
BsaHI GRCGYC 2 cut(s) 1019, 1109
BsaI GGTCTC 1 cut(s) 130
BsaJI CCNNGG 4 cut(s) 274, 514, 550, 1045
BsaXI ACNNNNNCTCC 4 cut(s) 587, 617, 968, 998
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 216, 328, 329, 958, 1118
Bse1I ACTGG 3 cut(s) 672, 1067, 1251
Bse21I CCTNAGG 1 cut(s) 1023
Bse8I GATNNNNATC 2 cut(s) 705, 915
BseDI CCNNGG 4 cut(s) 274, 514, 550, 1045
BseGI GGATG 4 cut(s) 50, 90, 685, 1447
BseJI GATNNNNATC 2 cut(s) 705, 915
BseLI CCNNNNNNNGG 6 cut(s) 121, 216, 328, 329, 958, 1118
BseMII CTCAG 5 cut(s) 86, 399, 459, 1014, 1047
BseNI ACTGG 3 cut(s) 672, 1067, 1251
BseRI GAGGAG 3 cut(s) 127, 254, 1347
BseSI GKGCMC 1 cut(s) 872
BsgI GTGCAG 2 cut(s) 383, 605
Bsh1236I CGCG 3 cut(s) 353, 590, 1055
BshFI GGCC 5 cut(s) 188, 237, 965, 1044, 1354
BshNI GGYRCC 1 cut(s) 1018
BsiHKAI GWGCWC 2 cut(s) 122, 834
BsiSI CCGG 5 cut(s) 76, 323, 516, 552, 953
BslFI GGGAC 2 cut(s) 1015, 1349
BslI CCNNNNNNNGG 6 cut(s) 121, 216, 328, 329, 958, 1118
BsmAI GTCTC 3 cut(s) 130, 590, 639
BsmFI GGGAC 2 cut(s) 1015, 1349
BsnI GGCC 5 cut(s) 188, 237, 965, 1044, 1354
Bso31I GGTCTC 1 cut(s) 130
Bsp1286I GDGCHC 4 cut(s) 122, 249, 834, 872
Bsp143I GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
Bsp19I CCATGG 1 cut(s) 1045
BspANI GGCC 5 cut(s) 188, 237, 965, 1044, 1354
BspCNI CTCAG 5 cut(s) 87, 400, 460, 1015, 1046
BspFNI CGCG 3 cut(s) 353, 590, 1055
BspHI TCATGA 1 cut(s) 919
BspLI GGNNCC 7 cut(s) 63, 221, 263, 732, 1003, 1004, 1020
BspMI ACCTGC 1 cut(s) 205
BspPI GGATC 2 cut(s) 1294, 1450
BspQI GCTCTTC 1 cut(s) 770
BspT107I GGYRCC 1 cut(s) 1018
BspTI CTTAAG 1 cut(s) 1154
BspTNI GGTCTC 1 cut(s) 130
BsrBI CCGCTC 1 cut(s) 984
BsrI ACTGG 3 cut(s) 672, 1067, 1251
BssECI CCNNGG 4 cut(s) 274, 514, 550, 1045
BssMI GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
BssNI GRCGYC 2 cut(s) 1019, 1109
BssSI CACGAG 1 cut(s) 1007
BssT1I CCWWGG 2 cut(s) 274, 1045
Bst2BI CACGAG 1 cut(s) 1007
Bst4CI ACNGT 3 cut(s) 61, 603, 874
Bst6I CTCTTC 2 cut(s) 770, 1259
BstACI GRCGYC 2 cut(s) 1019, 1109
BstAFI CTTAAG 1 cut(s) 1154
BstAPI GCANNNNNTGC 1 cut(s) 829
BstC8I GCNNGC 2 cut(s) 982, 1241
BstDEI CTNAG 7 cut(s) 95, 408, 468, 743, 1023, 1033, 1419
BstDSI CCRYGG 1 cut(s) 1045
BstENI CCTNNNNNAGG 1 cut(s) 1116
BstF5I GGATG 4 cut(s) 50, 90, 685, 1447
BstFNI CGCG 3 cut(s) 353, 590, 1055
BstH2I RGCGCY 1 cut(s) 1022
BstHHI GCGC 4 cut(s) 782, 817, 1021, 1055
BstKTI GATC 6 cut(s) 442, 709, 1032, 1289, 1299, 1458
BstMAI GTCTC 3 cut(s) 130, 590, 639
BstMBI GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
BstNSI RCATGY 1 cut(s) 436
BstSCI CCNGG 4 cut(s) 321, 514, 550, 951
BstSLI GKGCMC 1 cut(s) 872
BstUI CGCG 3 cut(s) 353, 590, 1055
BstX2I RGATCY 2 cut(s) 1286, 1455
BstYI RGATCY 2 cut(s) 1286, 1455
Bsu36I CCTNAGG 1 cut(s) 1023
BsuRI GGCC 5 cut(s) 188, 237, 965, 1044, 1354
BtgI CCRYGG 1 cut(s) 1045
BtgZI GCGATG 1 cut(s) 368
BtrI CACGTC 1 cut(s) 727
BtsCI GGATG 4 cut(s) 50, 90, 685, 1447
BtsI GCAGTG 1 cut(s) 347
BtsIMutI CAGTG 3 cut(s) 144, 347, 599
BveI ACCTGC 1 cut(s) 205
Cac8I GCNNGC 2 cut(s) 982, 1241
CaiI CAGNNNCTG 1 cut(s) 45
CciI TCATGA 1 cut(s) 919
CfoI GCGC 4 cut(s) 782, 817, 1021, 1055
Cfr13I GGNCC 2 cut(s) 769, 1002
CseI GACGC 1 cut(s) 1117
Csp6I GTAC 4 cut(s) 301, 665, 1012, 1099
CspCI CAANNNNNGTGG 2 cut(s) 1164, 1199
CviQI GTAC 4 cut(s) 301, 665, 1012, 1099
DdeI CTNAG 7 cut(s) 95, 408, 468, 743, 1023, 1033, 1419
DinI GGCGCC 1 cut(s) 1020
DpnI GATC 6 cut(s) 441, 708, 1031, 1288, 1298, 1457
DpnII GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
EaeI YGGCCR 1 cut(s) 963
Eam1104I CTCTTC 2 cut(s) 770, 1259
EarI CTCTTC 2 cut(s) 770, 1259
EciI GGCGGA 3 cut(s) 257, 608, 1120
Ecl136II GAGCTC 1 cut(s) 120
Eco130I CCWWGG 2 cut(s) 274, 1045
Eco147I AGGCCT 1 cut(s) 1354
Eco24I GRGCYC 2 cut(s) 122, 249
Eco31I GGTCTC 1 cut(s) 130
Eco47I GGWCC 2 cut(s) 769, 1002
Eco53kI GAGCTC 1 cut(s) 120
Eco57I CTGAAG 3 cut(s) 85, 168, 547
Eco81I CCTNAGG 1 cut(s) 1023
EcoICRI GAGCTC 1 cut(s) 120
EcoNI CCTNNNNNAGG 1 cut(s) 1116
EcoO109I RGGNCCY 1 cut(s) 1002
EcoT14I CCWWGG 2 cut(s) 274, 1045
EcoT38I GRGCYC 2 cut(s) 122, 249
EgeI GGCGCC 1 cut(s) 1020
EheI GGCGCC 1 cut(s) 1020
ErhI CCWWGG 2 cut(s) 274, 1045
FaqI GGGAC 2 cut(s) 1015, 1349
FauI CCCGC 1 cut(s) 989
FokI GGATG 4 cut(s) 37, 97, 692, 1454
FriOI GRGCYC 2 cut(s) 122, 249
FspBI CTAG 4 cut(s) 275, 579, 611, 761
GlaI GCGC 4 cut(s) 781, 816, 1020, 1054
HaeII RGCGCY 1 cut(s) 1022
HaeIII GGCC 5 cut(s) 188, 237, 965, 1044, 1354
HapII CCGG 5 cut(s) 76, 323, 516, 552, 953
HgaI GACGC 1 cut(s) 1117
HhaI GCGC 4 cut(s) 782, 817, 1021, 1055
Hin1I GRCGYC 2 cut(s) 1019, 1109
Hin6I GCGC 4 cut(s) 780, 815, 1019, 1053
HinP1I GCGC 4 cut(s) 780, 815, 1019, 1053
HincII GTYRAC 2 cut(s) 367, 542
HindII GTYRAC 2 cut(s) 367, 542
HinfI GANTC 5 cut(s) 26, 68, 424, 764, 1255
HpaII CCGG 5 cut(s) 76, 323, 516, 552, 953
HphI GGTGA 3 cut(s) 434, 1039, 1261
Hpy166II GTNNAC 5 cut(s) 301, 367, 542, 1060, 1068
Hpy188I TCNGA 7 cut(s) 31, 700, 757, 769, 1076, 1220, 1455
Hpy188III TCNNGA 6 cut(s) 65, 428, 611, 920, 1226, 1294
Hpy8I GTNNAC 5 cut(s) 301, 367, 542, 1060, 1068
Hpy99I CGWCG 1 cut(s) 728
HpyAV CCTTC 2 cut(s) 412, 859
HpyCH4III ACNGT 3 cut(s) 61, 603, 874
HpyCH4IV ACGT 1 cut(s) 726
HpyCH4V TGCA 5 cut(s) 200, 400, 622, 823, 1381
HpyF3I CTNAG 7 cut(s) 95, 408, 468, 743, 1023, 1033, 1419
HpySE526I ACGT 1 cut(s) 726
Hsp92I GRCGYC 2 cut(s) 1019, 1109
HspAI GCGC 4 cut(s) 780, 815, 1019, 1053
KasI GGCGCC 1 cut(s) 1018
KflI GGGWCCC 1 cut(s) 1002
Kzo9I GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
LguI GCTCTTC 1 cut(s) 770
LmnI GCTCC 8 cut(s) 78, 140, 225, 233, 267, 757, 989, 1275
LweI GCATC 2 cut(s) 466, 576
MaeI CTAG 4 cut(s) 275, 579, 611, 761
MaeII ACGT 1 cut(s) 726
MaeIII GTNAC 2 cut(s) 638, 874
MalI GATC 6 cut(s) 441, 708, 1031, 1288, 1298, 1457
MbiI CCGCTC 1 cut(s) 984
MboI GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
MboII GAAGA 3 cut(s) 787, 1264, 1276
MflI RGATCY 2 cut(s) 1286, 1455
MhlI GDGCHC 4 cut(s) 122, 249, 834, 872
MluCI AATT 4 cut(s) 737, 1269, 1327, 1408
Mly113I GGCGCC 1 cut(s) 1019
MroXI GAANNNNTTC 1 cut(s) 1449
MseI TTAA 7 cut(s) 915, 1155, 1166, 1280, 1317, 1407, 1424
MslI CAYNNNNRTG 1 cut(s) 924
MspA1I CMGCKG 1 cut(s) 45
MspCI CTTAAG 1 cut(s) 1154
MspI CCGG 5 cut(s) 76, 323, 516, 552, 953
MspR9I CCNGG 4 cut(s) 323, 516, 552, 953
MvnI CGCG 3 cut(s) 353, 590, 1055
NarI GGCGCC 1 cut(s) 1019
NciI CCSGG 4 cut(s) 323, 516, 552, 953
NcoI CCATGG 1 cut(s) 1045
NdeII GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
NlaIV GGNNCC 7 cut(s) 63, 221, 263, 732, 1003, 1004, 1020
NmeAIII GCCGAG 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 874
NspI RCATGY 1 cut(s) 436
PagI TCATGA 1 cut(s) 919
PceI AGGCCT 1 cut(s) 1354
PciSI GCTCTTC 1 cut(s) 770
PdmI GAANNNNTTC 1 cut(s) 1449
PfeI GAWTC 5 cut(s) 26, 68, 424, 764, 1255
PluTI GGCGCC 1 cut(s) 1022
PpuMI RGGWCCY 1 cut(s) 1002
PsiI TTATAA 1 cut(s) 939
Psp124BI GAGCTC 1 cut(s) 122
Psp5II RGGWCCY 1 cut(s) 1002
PspN4I GGNNCC 7 cut(s) 63, 221, 263, 732, 1003, 1004, 1020
PspPI GGNCC 2 cut(s) 769, 1002
PspPPI RGGWCCY 1 cut(s) 1002
PstNI CAGNNNCTG 1 cut(s) 45
PsuI RGATCY 2 cut(s) 1286, 1455
PvuII CAGCTG 1 cut(s) 45
RsaI GTAC 4 cut(s) 302, 666, 1013, 1100
RsaNI GTAC 4 cut(s) 301, 665, 1012, 1099
RseI CAYNNNNRTG 1 cut(s) 924
SacI GAGCTC 1 cut(s) 122
SapI GCTCTTC 1 cut(s) 770
SaqAI TTAA 7 cut(s) 915, 1155, 1166, 1280, 1317, 1407, 1424
Sau3AI GATC 6 cut(s) 439, 706, 1029, 1286, 1296, 1455
Sau96I GGNCC 2 cut(s) 769, 1002
ScaI AGTACT 1 cut(s) 1013
ScrFI CCNGG 4 cut(s) 323, 516, 552, 953
SduI GDGCHC 4 cut(s) 122, 249, 834, 872
SfaNI GCATC 2 cut(s) 466, 576
SfoI GGCGCC 1 cut(s) 1020
SinI GGWCC 2 cut(s) 769, 1002
SmiMI CAYNNNNRTG 1 cut(s) 924
SmlI CTYRAG 2 cut(s) 1154, 1205
SmoI CTYRAG 2 cut(s) 1154, 1205
Sse9I AATT 4 cut(s) 737, 1269, 1327, 1408
SseBI AGGCCT 1 cut(s) 1354
SspDI GGCGCC 1 cut(s) 1018
SspMI CTAG 4 cut(s) 275, 579, 611, 761
SstI GAGCTC 1 cut(s) 122
StuI AGGCCT 1 cut(s) 1354
StyD4I CCNGG 4 cut(s) 321, 514, 550, 951
StyI CCWWGG 2 cut(s) 274, 1045
TaaI ACNGT 3 cut(s) 61, 603, 874
TaiI ACGT 1 cut(s) 729
TaqI TCGA 4 cut(s) 71, 249, 438, 1402
TaqII GACCGA 1 cut(s) 112
TasI AATT 4 cut(s) 737, 1269, 1327, 1408
TatI WGTACW 2 cut(s) 664, 1011
TauI GCSGC 9 cut(s) 111, 114, 217, 220, 273, 285, 340, 522, 593
TfiI GAWTC 5 cut(s) 26, 68, 424, 764, 1255
Tru1I TTAA 7 cut(s) 915, 1155, 1166, 1280, 1317, 1407, 1424
Tru9I TTAA 7 cut(s) 915, 1155, 1166, 1280, 1317, 1407, 1424
TscAI CASTG 3 cut(s) 151, 347, 606
TseFI GTSAC 1 cut(s) 874
Tsp45I GTSAC 1 cut(s) 874
TspDTI ATGAA 4 cut(s) 371, 780, 1104, 1458
TspGWI ACGGA 1 cut(s) 118
TspRI CASTG 3 cut(s) 151, 347, 606
Vha464I CTTAAG 1 cut(s) 1154
VpaK11BI GGWCC 2 cut(s) 769, 1002
XagI CCTNNNNNAGG 1 cut(s) 1116
XbaI TCTAGA 1 cut(s) 610
XceI RCATGY 1 cut(s) 436
XcmI CCANNNNNNNNNTGG 1 cut(s) 994
XmaJI CCTAGG 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 1449
XspI CTAG 4 cut(s) 275, 579, 611, 761
ZrmI AGTACT 1 cut(s) 1013
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.