pycom15g16070

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0019188
Physical Location & Seq
Forward (+)
11186194 .. 11186625
432 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g16070.1

Sequence Viewer

Length: 432 bp
ATGCATGCAGTGGGAAAACACACCTTTGAAGCACAACTCCACACTCTCACCACGCGACGAATTGTGGAGAAACGAGCCCAGCAAACGTCCTCACTGTATATATATGGCGACGATTCATATCCAATAATCCAAGCTTCGAAACCAAACTGCAAATTCGCTCTTGTTCTTTCTTTGATTTCAATTACAGTCCAAACTAGGGTAAAAATAGATATGTCTCCCCTTTCAAAATTGACGATGAGTGCCTCATGGTGCAAGAAGCATGGAGACGACAACGACGATGGTGTTGACGGGTACGACTATGCCCCGGCAGCATGCATGGAAGGTGATGGCGATGACAATGATTCGGATTATGATTATGCTCCAGCAGCATCCATGGAAGGTGATGATGATGACGACGATGATGGTAGCTATGATTATGCACCTGCTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

144

Amino Acids

15.67

Weight (kDa)

4.28

Isoelectric Point (pI)

52.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04050
prunus_persica Prupe.7G236500_v2.0.a1
pyrus_communis pycom15g16070
rosa_chinensis RchiOBHm_Chr2g0089511
rosa_roxburghii Rroxscaffold_2G00151860
rosa_rugosa Rorug02G0001400
rosa_samantha Rh2AG046700 Rh2CG047100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 55
AcsI RAATTY 1 cut(s) 152
AfaI GTAC 1 cut(s) 293
AfiI CCNNNNNNNGG 1 cut(s) 196
AgsI TTSAA 3 cut(s) 29, 180, 225
AluBI AGCT 2 cut(s) 134, 408
AluI AGCT 2 cut(s) 134, 408
Alw26I GTCTC 2 cut(s) 219, 258
ApeKI GCWGC 3 cut(s) 308, 365, 425
ApoI RAATTY 1 cut(s) 152
AsuC2I CCSGG 1 cut(s) 305
AsuHPI GGTGA 3 cut(s) 40, 335, 392
AsuII TTCGAA 1 cut(s) 137
BanII GRGCYC 1 cut(s) 79
BbvI GCAGC 3 cut(s) 320, 377, 412
BccI CCATC 3 cut(s) 272, 320, 395
BcnI CCSGG 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 219, 258
BfaI CTAG 1 cut(s) 195
BisI GCNGC 3 cut(s) 309, 366, 426
BlsI GCNGC 3 cut(s) 310, 367, 427
Bme1390I CCNGG 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 305
BmsI GCATC 1 cut(s) 377
BpmI CTGGAG 1 cut(s) 345
Bpu14I TTCGAA 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 305
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 303, 372
Bsc4I CCNNNNNNNGG 1 cut(s) 196
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 303, 372
BseGI GGATG 1 cut(s) 368
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 196
BseXI GCAGC 3 cut(s) 320, 377, 412
BseYI CCCAGC 1 cut(s) 78
Bsh1236I CGCG 1 cut(s) 55
BsiSI CCGG 1 cut(s) 305
BslI CCNNNNNNNGG 1 cut(s) 196
BsmAI GTCTC 2 cut(s) 219, 258
BsmBI CGTCTC 1 cut(s) 258
Bsp119I TTCGAA 1 cut(s) 137
Bsp1286I GDGCHC 1 cut(s) 79
Bsp19I CCATGG 1 cut(s) 372
BspFNI CGCG 1 cut(s) 55
BspT104I TTCGAA 1 cut(s) 137
BssECI CCNNGG 2 cut(s) 303, 372
BssT1I CCWWGG 1 cut(s) 372
Bst4CI ACNGT 2 cut(s) 96, 187
BstAPI GCANNNNNTGC 1 cut(s) 425
BstBI TTCGAA 1 cut(s) 137
BstC8I GCNNGC 2 cut(s) 6, 313
BstDSI CCRYGG 1 cut(s) 372
BstF5I GGATG 1 cut(s) 368
BstFNI CGCG 1 cut(s) 55
BstMAI GTCTC 2 cut(s) 219, 258
BstMWI GCNNNNNNNGC 3 cut(s) 308, 365, 425
BstNSI RCATGY 2 cut(s) 8, 315
BstSCI CCNGG 1 cut(s) 303
BstUI CGCG 1 cut(s) 55
BstV1I GCAGC 3 cut(s) 320, 377, 412
BtgI CCRYGG 1 cut(s) 372
BtgZI GCGATG 1 cut(s) 345
BtsCI GGATG 1 cut(s) 368
BtsI GCAGTG 1 cut(s) 15
BtsIMutI CAGTG 2 cut(s) 15, 92
Cac8I GCNNGC 2 cut(s) 6, 313
Csp6I GTAC 1 cut(s) 292
CviAII CATG 6 cut(s) 5, 246, 260, 312, 316, 373
CviJI RGCY 3 cut(s) 77, 134, 408
CviKI_1 RGCY 3 cut(s) 77, 134, 408
CviQI GTAC 1 cut(s) 292
Eco130I CCWWGG 1 cut(s) 372
Eco24I GRGCYC 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 372
EcoT22I ATGCAT 2 cut(s) 6, 317
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 372
Esp3I CGTCTC 1 cut(s) 258
FaeI CATG 6 cut(s) 8, 249, 263, 315, 319, 376
FatI CATG 6 cut(s) 4, 245, 259, 311, 315, 372
Fnu4HI GCNGC 3 cut(s) 309, 366, 426
FokI GGATG 1 cut(s) 355
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 3 cut(s) 309, 366, 426
FspBI CTAG 1 cut(s) 195
GluI GCNGC 3 cut(s) 309, 366, 426
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 1 cut(s) 345
HapII CCGG 1 cut(s) 305
Hin1II CATG 6 cut(s) 8, 249, 263, 315, 319, 376
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HindIII AAGCTT 1 cut(s) 132
HinfI GANTC 2 cut(s) 113, 341
HpaII CCGG 1 cut(s) 305
HphI GGTGA 3 cut(s) 40, 335, 392
Hpy166II GTNNAC 1 cut(s) 286
Hpy188I TCNGA 1 cut(s) 346
Hpy8I GTNNAC 1 cut(s) 286
Hpy99I CGWCG 4 cut(s) 60, 113, 278, 398
HpyAV CCTTC 2 cut(s) 314, 371
HpyCH4III ACNGT 2 cut(s) 96, 187
HpyCH4IV ACGT 1 cut(s) 86
HpyCH4V TGCA 7 cut(s) 4, 8, 150, 252, 315, 419, 428
HpyF10VI GCNNNNNNNGC 3 cut(s) 308, 365, 425
HpySE526I ACGT 1 cut(s) 86
Hsp92II CATG 6 cut(s) 8, 249, 263, 315, 319, 376
LmnI GCTCC 1 cut(s) 364
LpnPI CCDG 3 cut(s) 92, 318, 375
Lsp1109I GCAGC 3 cut(s) 320, 377, 412
LweI GCATC 1 cut(s) 377
MaeI CTAG 1 cut(s) 195
MaeII ACGT 1 cut(s) 86
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 4 cut(s) 60, 152, 180, 227
MnlI CCTC 2 cut(s) 100, 253
Mph1103I ATGCAT 2 cut(s) 6, 317
MspI CCGG 1 cut(s) 305
MspR9I CCNGG 1 cut(s) 305
MvnI CGCG 1 cut(s) 55
MwoI GCNNNNNNNGC 3 cut(s) 308, 365, 425
NciI CCSGG 1 cut(s) 305
NcoI CCATGG 1 cut(s) 372
NlaIII CATG 6 cut(s) 8, 249, 263, 315, 319, 376
NsiI ATGCAT 2 cut(s) 6, 317
NspI RCATGY 2 cut(s) 8, 315
NspV TTCGAA 1 cut(s) 137
PaeI GCATGC 2 cut(s) 8, 315
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PfeI GAWTC 2 cut(s) 113, 341
PkrI GCNGC 3 cut(s) 310, 367, 427
PspFI CCCAGC 1 cut(s) 78
RsaI GTAC 1 cut(s) 293
RsaNI GTAC 1 cut(s) 292
SatI GCNGC 3 cut(s) 309, 366, 426
ScrFI CCNGG 1 cut(s) 305
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 26, 89, 136, 325, 382, 410, 424
SfaNI GCATC 1 cut(s) 377
SfuI TTCGAA 1 cut(s) 137
SphI GCATGC 2 cut(s) 8, 315
Sse9I AATT 4 cut(s) 60, 152, 180, 227
SspMI CTAG 1 cut(s) 195
StyD4I CCNGG 1 cut(s) 303
StyI CCWWGG 1 cut(s) 372
TaaI ACNGT 2 cut(s) 96, 187
TaiI ACGT 1 cut(s) 89
TaqI TCGA 1 cut(s) 137
TasI AATT 4 cut(s) 60, 152, 180, 227
TfiI GAWTC 2 cut(s) 113, 341
TscAI CASTG 2 cut(s) 15, 99
TseI GCWGC 3 cut(s) 308, 365, 425
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 15, 99
XapI RAATTY 1 cut(s) 152
XceI RCATGY 2 cut(s) 8, 315
XspI CTAG 1 cut(s) 195
Zsp2I ATGCAT 2 cut(s) 6, 317
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.