Rh2CG047100

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
3745342 .. 3746034
693 bp
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UTR
Exon/CDS
Intron
Rh2CG047100.1

Sequence Viewer

Length: 228 bp
ATGTTTGCCCTTTCAAAGTTCAAGAGTGCCTCAATATCATGGTGGAAGAACCATGGAGATGGAGACGACGATGGTGATGATGGATATGACTATGCCCCGGCAGCATCGGCAAGCATGGAAGGCGATGGCGACGATGATGATTCTGACTATGACTATGCTCCGGCGGCCTCTATGGAAGACGGAGACGACGACGACGATGGTGGTTATGATTATGCTCCAGCCCCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.97

Weight (kDa)

4.05

Isoelectric Point (pI)

47.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04050
prunus_persica Prupe.7G236500_v2.0.a1
pyrus_communis pycom15g16070
rosa_chinensis RchiOBHm_Chr2g0089511
rosa_roxburghii Rroxscaffold_2G00151860
rosa_rugosa Rorug02G0001400
rosa_samantha Rh2AG046700 Rh2CG047100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 164
AgsI TTSAA 2 cut(s) 15, 22
Alw26I GTCTC 2 cut(s) 57, 177
AoxI GGCC 1 cut(s) 165
ApeKI GCWGC 1 cut(s) 101
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 113
BccI CCATC 5 cut(s) 53, 65, 74, 119, 191
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 2 cut(s) 57, 177
BisI GCNGC 2 cut(s) 102, 165
BlsI GCNGC 2 cut(s) 103, 166
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 2 cut(s) 52, 96
BseDI CCNNGG 2 cut(s) 52, 96
BseXI GCAGC 1 cut(s) 113
BshFI GGCC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 98, 161
BsmAI GTCTC 2 cut(s) 57, 177
BsmBI CGTCTC 2 cut(s) 57, 177
BsnI GGCC 1 cut(s) 167
Bsp19I CCATGG 1 cut(s) 52
BspACI CCGC 1 cut(s) 164
BspANI GGCC 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 52, 96
BssT1I CCWWGG 1 cut(s) 52
BstC8I GCNNGC 1 cut(s) 112
BstDSI CCRYGG 1 cut(s) 52
BstMAI GTCTC 2 cut(s) 57, 177
BstMWI GCNNNNNNNGC 4 cut(s) 101, 107, 120, 164
BstSCI CCNGG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 113
BstV2I GAAGAC 1 cut(s) 183
BstXI CCANNNNNNTGG 1 cut(s) 59
BsuRI GGCC 1 cut(s) 167
BtgI CCRYGG 1 cut(s) 52
BtgZI GCGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 112
CviAII CATG 3 cut(s) 39, 53, 115
CviJI RGCY 2 cut(s) 167, 221
CviKI_1 RGCY 2 cut(s) 167, 221
Eco130I CCWWGG 1 cut(s) 52
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
Esp3I CGTCTC 2 cut(s) 57, 177
FaeI CATG 3 cut(s) 42, 56, 118
FatI CATG 3 cut(s) 38, 52, 114
Fnu4HI GCNGC 2 cut(s) 102, 165
Fsp4HI GCNGC 2 cut(s) 102, 165
GluI GCNGC 2 cut(s) 102, 165
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 98, 161
Hin1II CATG 3 cut(s) 42, 56, 118
HinfI GANTC 1 cut(s) 140
HpaII CCGG 2 cut(s) 98, 161
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 22
Hpy99I CGWCG 5 cut(s) 71, 134, 191, 194, 197
HpyAV CCTTC 1 cut(s) 113
HpyF10VI GCNNNNNNNGC 4 cut(s) 101, 107, 120, 164
Hsp92II CATG 3 cut(s) 42, 56, 118
LmnI GCTCC 2 cut(s) 163, 220
LpnPI CCDG 2 cut(s) 111, 174
Lsp1109I GCAGC 1 cut(s) 113
LweI GCATC 1 cut(s) 113
MboII GAAGA 2 cut(s) 58, 188
MnlI CCTC 2 cut(s) 40, 178
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 2 cut(s) 98, 161
MspR9I CCNGG 1 cut(s) 98
MwoI GCNNNNNNNGC 4 cut(s) 101, 107, 120, 164
NciI CCSGG 1 cut(s) 98
NcoI CCATGG 1 cut(s) 52
NlaIII CATG 3 cut(s) 42, 56, 118
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 192
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 2 cut(s) 103, 166
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 2 cut(s) 102, 165
ScrFI CCNGG 1 cut(s) 98
SfaNI GCATC 1 cut(s) 113
SgeI CNNG 8 cut(s) 34, 51, 65, 109, 110, 123, 127, 173
SmiMI CAYNNNNRTG 1 cut(s) 57
SsiI CCGC 1 cut(s) 164
StyD4I CCNGG 1 cut(s) 96
StyI CCWWGG 1 cut(s) 52
TauI GCSGC 1 cut(s) 167
TfiI GAWTC 1 cut(s) 140
TseI GCWGC 1 cut(s) 101
TspGWI ACGGA 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.