Rh2AG046700

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
3631096 .. 3631323
228 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG046700.1

Sequence Viewer

Length: 228 bp
ATGTTTGCCCTTTCAAAGTTCAAGAGTGCCTCAATATCATGGTGGAAGAAGCATGGAGATGGAGACGACGATGGTGATGATGGATATGACTATGCCCCGGCGGCATCAGCAAGCATGGAAGGCGATGGCGACGATGATGATTCTGACTATGACTATGCTCCGGCGGCCTCTATGGAAGACGGCGACGACGAGAACGAAGGTGGTTATGATTATGCTCCAGCCGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

75

Amino Acids

7.99

Weight (kDa)

4.05

Isoelectric Point (pI)

45.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019188)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g04050
prunus_persica Prupe.7G236500_v2.0.a1
pyrus_communis pycom15g16070
rosa_chinensis RchiOBHm_Chr2g0089511
rosa_roxburghii Rroxscaffold_2G00151860
rosa_rugosa Rorug02G0001400
rosa_samantha Rh2AG046700 Rh2CG047100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 101, 164, 222
AgsI TTSAA 2 cut(s) 15, 22
Alw26I GTCTC 1 cut(s) 57
AoxI GGCC 1 cut(s) 165
AsuC2I CCSGG 1 cut(s) 98
AsuHPI GGTGA 1 cut(s) 86
BbsI GAAGAC 1 cut(s) 183
BccI CCATC 4 cut(s) 53, 65, 74, 119
BceAI ACGGC 1 cut(s) 196
BcnI CCSGG 1 cut(s) 98
BcoDI GTCTC 1 cut(s) 57
BglI GCCNNNNNGGC 1 cut(s) 101
BisI GCNGC 3 cut(s) 102, 165, 222
BlsI GCNGC 3 cut(s) 103, 166, 223
Bme1390I CCNGG 1 cut(s) 98
BmrFI CCNGG 1 cut(s) 98
BmsI GCATC 1 cut(s) 113
BpiI GAAGAC 1 cut(s) 183
BpmI CTGGAG 1 cut(s) 201
BpuMI CCSGG 1 cut(s) 98
BsaJI CCNNGG 1 cut(s) 96
BseDI CCNNGG 1 cut(s) 96
BshFI GGCC 1 cut(s) 167
BsiSI CCGG 2 cut(s) 98, 161
BsmAI GTCTC 1 cut(s) 57
BsmBI CGTCTC 1 cut(s) 57
BsnI GGCC 1 cut(s) 167
BspACI CCGC 3 cut(s) 101, 164, 222
BspANI GGCC 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 96
BstC8I GCNNGC 1 cut(s) 112
BstMAI GTCTC 1 cut(s) 57
BstMWI GCNNNNNNNGC 5 cut(s) 101, 107, 120, 164, 221
BstSCI CCNGG 1 cut(s) 96
BstV2I GAAGAC 1 cut(s) 183
BsuRI GGCC 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 138
Cac8I GCNNGC 1 cut(s) 112
CviAII CATG 3 cut(s) 39, 53, 115
CviJI RGCY 2 cut(s) 167, 221
CviKI_1 RGCY 2 cut(s) 167, 221
Esp3I CGTCTC 1 cut(s) 57
FaeI CATG 3 cut(s) 42, 56, 118
FatI CATG 3 cut(s) 38, 52, 114
Fnu4HI GCNGC 3 cut(s) 102, 165, 222
Fsp4HI GCNGC 3 cut(s) 102, 165, 222
GluI GCNGC 3 cut(s) 102, 165, 222
GsuI CTGGAG 1 cut(s) 201
HaeIII GGCC 1 cut(s) 167
HapII CCGG 2 cut(s) 98, 161
Hin1II CATG 3 cut(s) 42, 56, 118
HinfI GANTC 1 cut(s) 140
HpaII CCGG 2 cut(s) 98, 161
HphI GGTGA 1 cut(s) 86
Hpy188I TCNGA 1 cut(s) 145
Hpy188III TCNNGA 1 cut(s) 22
Hpy99I CGWCG 4 cut(s) 71, 134, 188, 191
HpyAV CCTTC 2 cut(s) 113, 191
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 107, 120, 164, 221
Hsp92II CATG 3 cut(s) 42, 56, 118
LmnI GCTCC 2 cut(s) 163, 220
LpnPI CCDG 2 cut(s) 111, 174
LweI GCATC 1 cut(s) 113
MboII GAAGA 2 cut(s) 58, 188
MnlI CCTC 2 cut(s) 40, 178
MslI CAYNNNNRTG 1 cut(s) 57
MspI CCGG 2 cut(s) 98, 161
MspR9I CCNGG 1 cut(s) 98
MwoI GCNNNNNNNGC 5 cut(s) 101, 107, 120, 164, 221
NciI CCSGG 1 cut(s) 98
NlaIII CATG 3 cut(s) 42, 56, 118
PcsI WCGNNNNNNNCGW 2 cut(s) 186, 192
PfeI GAWTC 1 cut(s) 140
PkrI GCNGC 3 cut(s) 103, 166, 223
RseI CAYNNNNRTG 1 cut(s) 57
SatI GCNGC 3 cut(s) 102, 165, 222
ScrFI CCNGG 1 cut(s) 98
SetI ASST 1 cut(s) 202
SfaNI GCATC 1 cut(s) 113
SgeI CNNG 9 cut(s) 34, 51, 65, 109, 110, 123, 127, 173, 202
SmiMI CAYNNNNRTG 1 cut(s) 57
SsiI CCGC 3 cut(s) 101, 164, 222
StyD4I CCNGG 1 cut(s) 96
TauI GCSGC 3 cut(s) 104, 167, 224
TfiI GAWTC 1 cut(s) 140
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.