Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0015188

Physical Location & Seq

Genomic Coordinates Reverse (-)

11490437 .. 11490781

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g16360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 345 bp

ATGGATCGATCATGGGTGAAAGCACTCGATGTCAAGCCGTTAAACTACGAGCTTAGGCTTACATTCTCCGTCAATGCGCAGAAGAAGCTTAAGAACCTGCCGGTAAAAGAAGGGTGTTACGGAAATGTGGTGTGCCTTGCTTGTGTCACAAGCGCTGTGAGAAAGCTTCTGTATGGAAGACTTTCGGACACAACACGTTTGGTTCACGAAGCGCGGCTTGGCATCTCCAAAGAATACCTGAGATCAACGGTGGATTATGTCGAAGGGGACAGGCCAACGAGGCTGGAATTTGTAGGCAAATTGACAATAACTCAATGGACTAGGTTTTCAATCTACGACTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000271 GO:0003674 GO:0003824 GO:0005975 GO:0005976 GO:0006725 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009664 GO:0009698 GO:0009699 GO:0009832 GO:0009987 GO:0010345 GO:0010383 GO:0010393 GO:0016043 GO:0016051 GO:0016740 GO:0016746 GO:0016747 GO:0017144 GO:0019438 GO:0019748 GO:0033692 GO:0034637 GO:0034645 GO:0042546 GO:0043170 GO:0044036 GO:0044038 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044262 GO:0044264 GO:0044550 GO:0045229 GO:0045488 GO:0045489 GO:0050734 GO:0052325 GO:0052546 GO:0070589 GO:0070592 GO:0071554 GO:0071555 GO:0071669 GO:0071704 GO:0071840 GO:1901360 GO:1901362 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 map00073

Pfam Domains

Protein Families

Transferase

Protein Analysis

115

Amino Acids

13.12

Weight (kDa)

9.41

Isoelectric Point (pI)

17.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Transferase	PF02458	6 - 113	6.5e-07	Transferase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0015188)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G03390
fragaria_vesca	FvH4_1g04300
malus_domestica	MD02G1042700.v1.1 MD15G1181300.v1.1
prunus_persica	Prupe.7G234200_v2.0.a1
pyrus_communis	pycom15g16360
rosa_chinensis	RchiOBHm_Chr2g0089951
rosa_laevigata	RLG00000016063
rosa_multiflora	Rmu_co8471249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00151520
rosa_rugosa	Rorug02G0003700
rosa_samantha	Rh2AG049100 Rh2BG048000 Rh2CG050100 Rh2DG049200
rosa_wichuraiana	Rw2G004110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	78
Acc36I	ACCTGC	1 cut(s)	105
AccII	CGCG	1 cut(s)	214
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	12
AcsI	RAATTY	1 cut(s)	287
AfeI	AGCGCT	1 cut(s)	154
AflII	CTTAAG	1 cut(s)	89
AflIII	ACRYGT	1 cut(s)	194
AgsI	TTSAA	1 cut(s)	330
AjuI	GAANNNNNNNTTGG	2 cut(s)	201, 233
AluBI	AGCT	3 cut(s)	52, 88, 166
AluI	AGCT	3 cut(s)	52, 88, 166
AlwI	GGATC	1 cut(s)	12
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	1 cut(s)	272
ApoI	RAATTY	1 cut(s)	287
Asp700I	GAANNNNTTC	1 cut(s)	181
AspLEI	GCGC	3 cut(s)	79, 155, 214
AsuHPI	GGTGA	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	184
BceAI	ACGGC	1 cut(s)	22
BfaI	CTAG	1 cut(s)	321
BfoI	RGCGCY	1 cut(s)	156
BfrI	CTTAAG	1 cut(s)	89
BfuAI	ACCTGC	1 cut(s)	105
BglI	GCCNNNNNGGC	1 cut(s)	280
BisI	GCNGC	1 cut(s)	215
BlsI	GCNGC	1 cut(s)	216
BmsI	GCATC	1 cut(s)	231
BpiI	GAAGAC	1 cut(s)	184
Bpu10I	CCTNAGC	1 cut(s)	53
Bsa29I	ATCGAT	1 cut(s)	7
Bse118I	RCCGGY	1 cut(s)	100
BseCI	ATCGAT	1 cut(s)	7
BseMII	CTCAG	1 cut(s)	230
Bsh1236I	CGCG	1 cut(s)	214
BshFI	GGCC	1 cut(s)	274
BshVI	ATCGAT	1 cut(s)	7
BsiSI	CCGG	1 cut(s)	101
BslFI	GGGAC	1 cut(s)	281
BsmFI	GGGAC	1 cut(s)	281
BsnI	GGCC	1 cut(s)	274
Bsp143I	GATC	3 cut(s)	4, 8, 242
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	274
BspCNI	CTCAG	1 cut(s)	231
BspDI	ATCGAT	1 cut(s)	7
BspFNI	CGCG	1 cut(s)	214
BspMI	ACCTGC	1 cut(s)	105
BspPI	GGATC	1 cut(s)	12
BspTI	CTTAAG	1 cut(s)	89
BsrFI	RCCGGY	1 cut(s)	100
BssAI	RCCGGY	1 cut(s)	100
BssMI	GATC	3 cut(s)	4, 8, 242
Bst4CI	ACNGT	1 cut(s)	250
BstAFI	CTTAAG	1 cut(s)	89
BstDEI	CTNAG	2 cut(s)	53, 239
BstFNI	CGCG	1 cut(s)	214
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	3 cut(s)	79, 155, 214
BstKTI	GATC	3 cut(s)	7, 11, 245
BstMBI	GATC	3 cut(s)	4, 8, 242
BstMWI	GCNNNNNNNGC	2 cut(s)	85, 280
BstUI	CGCG	1 cut(s)	214
BstV2I	GAAGAC	1 cut(s)	184
Bsu15I	ATCGAT	1 cut(s)	7
BsuRI	GGCC	1 cut(s)	274
BsuTUI	ATCGAT	1 cut(s)	7
BveI	ACCTGC	1 cut(s)	105
CfoI	GCGC	3 cut(s)	79, 155, 214
Cfr10I	RCCGGY	1 cut(s)	100
ClaI	ATCGAT	1 cut(s)	7
CviAII	CATG	1 cut(s)	12
CviJI	RGCY	8 cut(s)	37, 52, 58, 88, 166, 217, 274, 283
CviKI_1	RGCY	8 cut(s)	37, 52, 58, 88, 166, 217, 274, 283
DdeI	CTNAG	2 cut(s)	53, 239
DpnI	GATC	3 cut(s)	6, 10, 244
DpnII	GATC	3 cut(s)	4, 8, 242
Eco47III	AGCGCT	1 cut(s)	154
FaeI	CATG	1 cut(s)	15
FaiI	YATR	3 cut(s)	13, 174, 258
FalI	AAGNNNNNCTT	2 cut(s)	201, 233
FaqI	GGGAC	1 cut(s)	281
FatI	CATG	1 cut(s)	11
Fnu4HI	GCNGC	1 cut(s)	215
Fsp4HI	GCNGC	1 cut(s)	215
FspBI	CTAG	1 cut(s)	321
FspI	TGCGCA	1 cut(s)	78
GlaI	GCGC	3 cut(s)	78, 154, 213
GluI	GCNGC	1 cut(s)	215
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	1 cut(s)	274
HapII	CCGG	1 cut(s)	101
HhaI	GCGC	3 cut(s)	79, 155, 214
Hin1II	CATG	1 cut(s)	15
Hin6I	GCGC	3 cut(s)	77, 153, 212
HinP1I	GCGC	3 cut(s)	77, 153, 212
HindIII	AAGCTT	2 cut(s)	86, 164
HpaII	CCGG	1 cut(s)	101
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	205
Hpy188I	TCNGA	1 cut(s)	187
Hpy188III	TCNNGA	1 cut(s)	206
Hpy8I	GTNNAC	1 cut(s)	205
HpyAV	CCTTC	2 cut(s)	104, 257
HpyCH4III	ACNGT	1 cut(s)	250
HpyCH4IV	ACGT	1 cut(s)	196
HpyF10VI	GCNNNNNNNGC	2 cut(s)	85, 280
HpyF3I	CTNAG	2 cut(s)	53, 239
HpySE526I	ACGT	1 cut(s)	196
Hsp92II	CATG	1 cut(s)	15
HspAI	GCGC	3 cut(s)	77, 153, 212
Kzo9I	GATC	3 cut(s)	4, 8, 242
LpnPI	CCDG	5 cut(s)	110, 114, 251, 256, 269
LweI	GCATC	1 cut(s)	231
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	1 cut(s)	196
MaeIII	GTNAC	2 cut(s)	116, 145
MalI	GATC	3 cut(s)	6, 10, 244
MboI	GATC	3 cut(s)	4, 8, 242
MboII	GAAGA	2 cut(s)	94, 189
MluCI	AATT	2 cut(s)	287, 299
MnlI	CCTC	1 cut(s)	273
MroXI	GAANNNNTTC	1 cut(s)	181
MseI	TTAA	2 cut(s)	41, 90
MspCI	CTTAAG	1 cut(s)	89
MspI	CCGG	1 cut(s)	101
MvnI	CGCG	1 cut(s)	214
MwoI	GCNNNNNNNGC	2 cut(s)	85, 280
NdeII	GATC	3 cut(s)	4, 8, 242
NlaIII	CATG	1 cut(s)	15
NmuCI	GTSAC	1 cut(s)	145
NsbI	TGCGCA	1 cut(s)	78
PdmI	GAANNNNTTC	1 cut(s)	181
PkrI	GCNGC	1 cut(s)	216
SaqAI	TTAA	2 cut(s)	41, 90
SatI	GCNGC	1 cut(s)	215
Sau3AI	GATC	3 cut(s)	4, 8, 242
SetI	ASST	7 cut(s)	54, 90, 99, 168, 199, 240, 326
SfaNI	GCATC	1 cut(s)	231
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	2 cut(s)	287, 299
SsiI	CCGC	1 cut(s)	214
SspMI	CTAG	1 cut(s)	321
TaaI	ACNGT	1 cut(s)	250
TaiI	ACGT	1 cut(s)	199
TaqI	TCGA	3 cut(s)	7, 27, 261
TasI	AATT	2 cut(s)	287, 299
TauI	GCSGC	1 cut(s)	217
Tru1I	TTAA	2 cut(s)	41, 90
Tru9I	TTAA	2 cut(s)	41, 90
TseFI	GTSAC	1 cut(s)	145
Tsp45I	GTSAC	1 cut(s)	145
TspGWI	ACGGA	2 cut(s)	58, 135
Vha464I	CTTAAG	1 cut(s)	89
XapI	RAATTY	1 cut(s)	287
XmnI	GAANNNNTTC	1 cut(s)	181
XspI	CTAG	1 cut(s)	321

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.