Rroxscaffold_2G00151520

Omega-hydroxypalmitate O-feruloyl

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
Physical Location & Seq
Forward (+)
88751992 .. 88753332
1341 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00151520.1

Sequence Viewer

Length: 1341 bp
ATGACTCCGGTCATACCCTCAGGGCCCATTCCGGTAGCTCTTGGCCAAACTCTATACCTTTCGAACCTAGATGACATGATCGGAGCTCGTGTTTTCACTCCGACTGTATATTTCTACTCGTCATATGACCGAAGACCTGTTATGAAAATACTACACGATGCTCTTGCAAGTGTGTTAGTCCCTTACTACCCTTTATCGGGTAGGCTAAGGGAGGCCAGAAATGGGAAACTAGAAGTGTTTTTTGGGCAAGAACAGGGAGCACTGTTGGTGGAGGCACACTCTGAAATGGCCTTGGCTGATCTAGGAGACCTGAAAGTCCCAAACCCAGCATGGACACCACTGATCTTTAGGTTCCCAAATGAAGAACCATACAAAGTCCTTGACATGCCATTGGTGATAGCTCAGGTCACTAATTTCAGCTGTGGTGGGTTTAGCATTGGCTTGAGAATCTGCCATTGCATCTGTGACGGTCTTGGTGCTATGCAATTCCTCACCTCATGGGCTGCAACAGCAAGAGCAGGCACATTGATCACTAACCCAGAGCCATGTTGGGACAGAGAGTTTTTCAGACCTCGCAACCCACCACTTGTGAAATTCCCACACATTGAATTCATGAGAATAGAAGATGGCTCAAGCCTCACAATGAGTCTATGGAAAACCAAGCCTGTTCAAAAGTGCTACCGGATGAGCCGGGAGTTCCAAACCTTGCTGAAAACTCTGGCTCAACCGAAAGATAACATGTCTAATGTTGCATGCAGCGCTTTTGATGCCATGGCAGCTCATGTATGGAGATCATGGGTGAAAGCACTTGATGTAAAACCATTGAACTATGGGCTTAGGCTAACCTTCTCTGCCAATGCCCGCAATAAACTCAAAAACCAGCCACTAAAAGACGGGTTTTATGGCAATGCAGTGTGTCTAGCTTGTGTCACAAGCACTGTGACAAAGCTTGTTCATGGGAGGCTCTCGGAGATTACTCACTTGGTTCGTGAAGCCCGGCTTGGTATCTCCGAAGAGTACCTAAGATCAACGGTGGACTATGTTGAAGTAGACAGACCAAGAAAACTGGAATTTGGAGGCAAATTGACAATAACTCAGTGGACCAGATTTCCAATGTATGATTCTGCTGATTTTGGATGGGGAAGGCCTATATATGCTGGTCCGATCGATCTCACTCCTACACCACAAGTCTGTGTTTTTCTGCCGGAAGCTGAGGCTGATCATCCTAGTGGGACAATGCTCGTTTGCATTTGCCTGCCTGAATCTGCTACTCATAACTTCACAGAACTTCTGTCTCTTACACATTCCGGTGATCCAAATCATGTCAATACTACTACGTAG

Protein Analysis

446

Amino Acids

49.89

Weight (kDa)

7.55

Isoelectric Point (pI)

40.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 4 - 429 1.6e-72 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015188)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G03390
fragaria_vesca FvH4_1g04300
malus_domestica MD02G1042700.v1.1 MD15G1181300.v1.1
prunus_persica Prupe.7G234200_v2.0.a1
pyrus_communis pycom15g16360
rosa_chinensis RchiOBHm_Chr2g0089951
rosa_laevigata RLG00000016063
rosa_multiflora Rmu_co8471249.1_g000001
rosa_roxburghii Rroxscaffold_2G00151520
rosa_rugosa Rorug02G0003700
rosa_samantha Rh2AG049100 Rh2BG048000 Rh2CG050100 Rh2DG049200
rosa_wichuraiana Rw2G004110

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 314
AccI GTMKAC 1 cut(s) 1050
AciI CCGC 1 cut(s) 862
AclWI GGATC 1 cut(s) 1307
AcoI YGGCCR 1 cut(s) 43
AcsI RAATTY 3 cut(s) 593, 608, 1070
AfaI GTAC 1 cut(s) 1019
AfeI AGCGCT 1 cut(s) 760
AfiI CCNNNNNNNGG 3 cut(s) 196, 197, 222
AflIII ACRYGT 1 cut(s) 738
AgsI TTSAA 4 cut(s) 608, 671, 826, 1046
AjuI GAANNNNNNNTTGG 6 cut(s) 225, 257, 984, 1016, 1105, 1137
AluBI AGCT 8 cut(s) 38, 86, 401, 420, 779, 923, 949, 1211
AluI AGCT 8 cut(s) 38, 86, 401, 420, 779, 923, 949, 1211
Alw21I GWGCWC 2 cut(s) 88, 262
Alw26I GTCTC 2 cut(s) 300, 1299
AlwI GGATC 1 cut(s) 1307
Aor51HI AGCGCT 1 cut(s) 760
AoxI GGCC 5 cut(s) 23, 43, 213, 288, 1145
ApaI GGGCCC 1 cut(s) 27
ApeKI GCWGC 3 cut(s) 503, 756, 776
ApoI RAATTY 3 cut(s) 593, 608, 1070
AspLEI GCGC 1 cut(s) 761
AspS9I GGNCC 4 cut(s) 23, 24, 1101, 1160
AsuC2I CCSGG 2 cut(s) 692, 997
AsuHPI GGTGA 4 cut(s) 406, 484, 811, 1322
AsuII TTCGAA 1 cut(s) 62
AvaII GGWCC 2 cut(s) 1101, 1160
AxyI CCTNAGG 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 27
BalI TGGCCA 1 cut(s) 45
BanII GRGCYC 2 cut(s) 27, 88
BauI CACGAG 1 cut(s) 87
BbsI GAAGAC 1 cut(s) 139
Bbv12I GWGCWC 2 cut(s) 88, 262
BbvCI CCTCAGC 1 cut(s) 1212
BbvI GCAGC 3 cut(s) 490, 768, 788
BccI CCATC 2 cut(s) 620, 1131
BcgI CGANNNNNNTGC 2 cut(s) 146, 180
BclI TGATCA 2 cut(s) 528, 1219
BcnI CCSGG 2 cut(s) 692, 997
BcoDI GTCTC 2 cut(s) 300, 1299
BfaI CTAG 5 cut(s) 68, 230, 302, 920, 1227
BfoI RGCGCY 1 cut(s) 762
BisI GCNGC 3 cut(s) 504, 757, 777
BlsI GCNGC 3 cut(s) 505, 758, 778
Bme1390I CCNGG 2 cut(s) 692, 997
Bme18I GGWCC 2 cut(s) 1101, 1160
BmgT120I GGNCC 4 cut(s) 23, 24, 1101, 1160
BmiI GGNNCC 2 cut(s) 25, 353
BmrFI CCNGG 2 cut(s) 692, 997
BmsI GCATC 3 cut(s) 148, 468, 757
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 263, 295
Bpu10I CCTNAGC 4 cut(s) 206, 402, 836, 1212
Bpu14I TTCGAA 1 cut(s) 62
BpuEI CTTGAG 2 cut(s) 463, 616
BpuMI CCSGG 2 cut(s) 692, 997
Bsa29I ATCGAT 1 cut(s) 1167
BsaAI YACGTR 1 cut(s) 1338
BsaBI GATNNNNATC 1 cut(s) 1317
BsaI GGTCTC 1 cut(s) 300
BsaJI CCNNGG 2 cut(s) 291, 771
BsaWI WCCGGW 4 cut(s) 7, 31, 681, 1307
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
Bsc4I CCNNNNNNNGG 3 cut(s) 196, 197, 222
Bse1I ACTGG 1 cut(s) 1071
Bse21I CCTNAGG 1 cut(s) 19
Bse3DI GCAATG 2 cut(s) 454, 913
Bse8I GATNNNNATC 1 cut(s) 1317
BseCI ATCGAT 1 cut(s) 1167
BseDI CCNNGG 2 cut(s) 291, 771
BseGI GGATG 3 cut(s) 690, 1142, 1222
BseJI GATNNNNATC 1 cut(s) 1317
BseLI CCNNNNNNNGG 3 cut(s) 196, 197, 222
BseMI GCAATG 2 cut(s) 454, 913
BseMII CTCAG 4 cut(s) 33, 416, 1109, 1203
BseNI ACTGG 1 cut(s) 1071
BseSI GKGCMC 1 cut(s) 27
BseXI GCAGC 3 cut(s) 490, 768, 788
BseYI CCCAGC 1 cut(s) 325
Bsh1285I CGRYCG 1 cut(s) 1167
BshFI GGCC 5 cut(s) 25, 45, 215, 290, 1147
BshVI ATCGAT 1 cut(s) 1167
BsiEI CGRYCG 1 cut(s) 1167
BsiHKAI GWGCWC 2 cut(s) 88, 262
BsiSI CCGG 7 cut(s) 8, 32, 682, 691, 997, 1205, 1308
BslFI GGGAC 4 cut(s) 164, 302, 566, 1246
BslI CCNNNNNNNGG 3 cut(s) 196, 197, 222
BsmAI GTCTC 2 cut(s) 300, 1299
BsmFI GGGAC 4 cut(s) 164, 302, 566, 1246
BsnI GGCC 5 cut(s) 25, 45, 215, 290, 1147
Bso31I GGTCTC 1 cut(s) 300
Bsp119I TTCGAA 1 cut(s) 62
Bsp120I GGGCCC 1 cut(s) 23
Bsp1286I GDGCHC 3 cut(s) 27, 88, 262
Bsp19I CCATGG 1 cut(s) 771
BspACI CCGC 1 cut(s) 862
BspANI GGCC 5 cut(s) 25, 45, 215, 290, 1147
BspCNI CTCAG 4 cut(s) 32, 415, 1108, 1204
BspDI ATCGAT 1 cut(s) 1167
BspHI TCATGA 1 cut(s) 612
BspLI GGNNCC 2 cut(s) 25, 353
BspPI GGATC 1 cut(s) 1307
BspT104I TTCGAA 1 cut(s) 62
BspTNI GGTCTC 1 cut(s) 300
BsrDI GCAATG 2 cut(s) 454, 913
BsrI ACTGG 1 cut(s) 1071
BssECI CCNNGG 2 cut(s) 291, 771
BssSI CACGAG 1 cut(s) 87
BssT1I CCWWGG 2 cut(s) 291, 771
Bst2BI CACGAG 1 cut(s) 87
Bst4CI ACNGT 5 cut(s) 106, 264, 470, 940, 1033
Bst6I CTCTTC 1 cut(s) 1008
BstBAI YACGTR 1 cut(s) 1338
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 4 cut(s) 520, 754, 862, 1256
BstDEI CTNAG 7 cut(s) 19, 206, 402, 836, 1022, 1095, 1212
BstDSI CCRYGG 1 cut(s) 771
BstF5I GGATG 3 cut(s) 690, 1142, 1222
BstH2I RGCGCY 1 cut(s) 762
BstHHI GCGC 1 cut(s) 761
BstMAI GTCTC 2 cut(s) 300, 1299
BstMCI CGRYCG 1 cut(s) 1167
BstMWI GCNNNNNNNGC 4 cut(s) 509, 758, 767, 776
BstNSI RCATGY 3 cut(s) 388, 742, 756
BstPAI GACNNNNGTC 1 cut(s) 8
BstSCI CCNGG 2 cut(s) 690, 995
BstSLI GKGCMC 1 cut(s) 27
BstSNI TACGTA 1 cut(s) 1338
BstV1I GCAGC 3 cut(s) 490, 768, 788
BstV2I GAAGAC 1 cut(s) 139
Bsu15I ATCGAT 1 cut(s) 1167
Bsu36I CCTNAGG 1 cut(s) 19
BsuRI GGCC 5 cut(s) 25, 45, 215, 290, 1147
BsuTUI ATCGAT 1 cut(s) 1167
BtgI CCRYGG 1 cut(s) 771
BtsCI GGATG 3 cut(s) 690, 1142, 1222
BtsI GCAGTG 1 cut(s) 918
BtsIMutI CAGTG 5 cut(s) 260, 338, 918, 936, 1103
Cac8I GCNNGC 4 cut(s) 520, 754, 862, 1256
CciI TCATGA 1 cut(s) 612
CfoI GCGC 1 cut(s) 761
Cfr13I GGNCC 4 cut(s) 23, 24, 1101, 1160
ClaI ATCGAT 1 cut(s) 1167
Csp6I GTAC 1 cut(s) 1018
CviQI GTAC 1 cut(s) 1018
DdeI CTNAG 7 cut(s) 19, 206, 402, 836, 1022, 1095, 1212
DrdI GACNNNNNNGTC 1 cut(s) 314
DseDI GACNNNNNNGTC 1 cut(s) 314
EaeI YGGCCR 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 1008
EarI CTCTTC 1 cut(s) 1008
Ecl136II GAGCTC 1 cut(s) 86
Eco105I TACGTA 1 cut(s) 1338
Eco130I CCWWGG 2 cut(s) 291, 771
Eco147I AGGCCT 1 cut(s) 1147
Eco24I GRGCYC 2 cut(s) 27, 88
Eco31I GGTCTC 1 cut(s) 300
Eco47I GGWCC 2 cut(s) 1101, 1160
Eco47III AGCGCT 1 cut(s) 760
Eco53kI GAGCTC 1 cut(s) 86
Eco81I CCTNAGG 1 cut(s) 19
EcoICRI GAGCTC 1 cut(s) 86
EcoO109I RGGNCCY 1 cut(s) 23
EcoRI GAATTC 1 cut(s) 608
EcoT14I CCWWGG 2 cut(s) 291, 771
EcoT38I GRGCYC 2 cut(s) 27, 88
ErhI CCWWGG 2 cut(s) 291, 771
FalI AAGNNNNNCTT 2 cut(s) 984, 1016
FaqI GGGAC 4 cut(s) 164, 302, 566, 1246
FauI CCCGC 1 cut(s) 869
FauNDI CATATG 1 cut(s) 124
FbaI TGATCA 2 cut(s) 528, 1219
FblI GTMKAC 1 cut(s) 1050
Fnu4HI GCNGC 3 cut(s) 504, 757, 777
FokI GGATG 3 cut(s) 697, 1149, 1209
FriOI GRGCYC 2 cut(s) 27, 88
Fsp4HI GCNGC 3 cut(s) 504, 757, 777
FspBI CTAG 5 cut(s) 68, 230, 302, 920, 1227
GlaI GCGC 1 cut(s) 760
GluI GCNGC 3 cut(s) 504, 757, 777
GsaI CCCAGC 1 cut(s) 329
HaeII RGCGCY 1 cut(s) 762
HaeIII GGCC 5 cut(s) 25, 45, 215, 290, 1147
HapII CCGG 7 cut(s) 8, 32, 682, 691, 997, 1205, 1308
HhaI GCGC 1 cut(s) 761
Hin6I GCGC 1 cut(s) 759
HinP1I GCGC 1 cut(s) 759
HindIII AAGCTT 1 cut(s) 947
HinfI GANTC 5 cut(s) 4, 447, 646, 1121, 1262
HpaII CCGG 7 cut(s) 8, 32, 682, 691, 997, 1205, 1308
HphI GGTGA 4 cut(s) 406, 484, 811, 1322
Hpy166II GTNNAC 3 cut(s) 1036, 1051, 1101
Hpy188I TCNGA 7 cut(s) 83, 102, 283, 569, 970, 1012, 1164
Hpy188III TCNNGA 2 cut(s) 613, 989
Hpy8I GTNNAC 3 cut(s) 1036, 1051, 1101
HpyAV CCTTC 2 cut(s) 856, 1137
HpyCH4III ACNGT 5 cut(s) 106, 264, 470, 940, 1033
HpyCH4IV ACGT 1 cut(s) 1337
HpyCH4V TGCA 8 cut(s) 167, 459, 484, 506, 752, 756, 911, 1248
HpyF10VI GCNNNNNNNGC 4 cut(s) 509, 758, 767, 776
HpyF3I CTNAG 7 cut(s) 19, 206, 402, 836, 1022, 1095, 1212
HpySE526I ACGT 1 cut(s) 1337
HspAI GCGC 1 cut(s) 759
Ksp22I TGATCA 2 cut(s) 528, 1219
LmnI GCTCC 2 cut(s) 83, 257
Lsp1109I GCAGC 3 cut(s) 490, 768, 788
LweI GCATC 3 cut(s) 148, 468, 757
MaeI CTAG 5 cut(s) 68, 230, 302, 920, 1227
MaeII ACGT 1 cut(s) 1337
MaeIII GTNAC 4 cut(s) 406, 464, 928, 940
MboII GAAGA 4 cut(s) 144, 374, 635, 1025
MhlI GDGCHC 3 cut(s) 27, 88, 262
MlsI TGGCCA 1 cut(s) 45
MluCI AATT 6 cut(s) 412, 485, 593, 608, 1070, 1082
MluNI TGGCCA 1 cut(s) 45
MlyI GAGTC 1 cut(s) 655
MmeI TCCRAC 1 cut(s) 125
Mox20I TGGCCA 1 cut(s) 45
MscI TGGCCA 1 cut(s) 45
MslI CAYNNNNRTG 2 cut(s) 1227, 1308
Msp20I TGGCCA 1 cut(s) 45
MspA1I CMGCKG 1 cut(s) 420
MspI CCGG 7 cut(s) 8, 32, 682, 691, 997, 1205, 1308
MspR9I CCNGG 2 cut(s) 692, 997
MwoI GCNNNNNNNGC 4 cut(s) 509, 758, 767, 776
NciI CCSGG 2 cut(s) 692, 997
NcoI CCATGG 1 cut(s) 771
NdeI CATATG 1 cut(s) 124
NlaIV GGNNCC 2 cut(s) 25, 353
NmuCI GTSAC 4 cut(s) 406, 464, 928, 940
NspI RCATGY 3 cut(s) 388, 742, 756
NspV TTCGAA 1 cut(s) 62
PaeI GCATGC 1 cut(s) 756
PagI TCATGA 1 cut(s) 612
PceI AGGCCT 1 cut(s) 1147
PciI ACATGT 1 cut(s) 738
PfeI GAWTC 3 cut(s) 447, 1121, 1262
PkrI GCNGC 3 cut(s) 505, 758, 778
Ple19I CGATCG 1 cut(s) 1167
PleI GAGTC 1 cut(s) 654
PpsI GAGTC 1 cut(s) 654
Ppu21I YACGTR 1 cut(s) 1338
PscI ACATGT 1 cut(s) 738
PshAI GACNNNNGTC 1 cut(s) 8
Psp124BI GAGCTC 1 cut(s) 88
PspFI CCCAGC 1 cut(s) 325
PspN4I GGNNCC 2 cut(s) 25, 353
PspOMI GGGCCC 1 cut(s) 23
PspPI GGNCC 4 cut(s) 23, 24, 1101, 1160
PvuI CGATCG 1 cut(s) 1167
PvuII CAGCTG 1 cut(s) 420
RsaI GTAC 1 cut(s) 1019
RsaNI GTAC 1 cut(s) 1018
RseI CAYNNNNRTG 2 cut(s) 1227, 1308
SacI GAGCTC 1 cut(s) 88
SatI GCNGC 3 cut(s) 504, 757, 777
Sau96I GGNCC 4 cut(s) 23, 24, 1101, 1160
SchI GAGTC 1 cut(s) 655
ScrFI CCNGG 2 cut(s) 692, 997
SduI GDGCHC 3 cut(s) 27, 88, 262
SfaNI GCATC 3 cut(s) 148, 468, 757
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 2 cut(s) 1101, 1160
SmiMI CAYNNNNRTG 2 cut(s) 1227, 1308
SmlI CTYRAG 2 cut(s) 442, 631
SmoI CTYRAG 2 cut(s) 442, 631
SnaBI TACGTA 1 cut(s) 1338
SphI GCATGC 1 cut(s) 756
Sse9I AATT 6 cut(s) 412, 485, 593, 608, 1070, 1082
SseBI AGGCCT 1 cut(s) 1147
SsiI CCGC 1 cut(s) 862
SspMI CTAG 5 cut(s) 68, 230, 302, 920, 1227
SstI GAGCTC 1 cut(s) 88
StuI AGGCCT 1 cut(s) 1147
StyD4I CCNGG 2 cut(s) 690, 995
StyI CCWWGG 2 cut(s) 291, 771
TaaI ACNGT 5 cut(s) 106, 264, 470, 940, 1033
TaiI ACGT 1 cut(s) 1340
TaqI TCGA 2 cut(s) 62, 1167
TaqII GACCGA 1 cut(s) 144
TasI AATT 6 cut(s) 412, 485, 593, 608, 1070, 1082
TfiI GAWTC 3 cut(s) 447, 1121, 1262
TscAI CASTG 5 cut(s) 267, 345, 918, 943, 1103
TseFI GTSAC 4 cut(s) 406, 464, 928, 940
TseI GCWGC 3 cut(s) 503, 756, 776
Tsp45I GTSAC 4 cut(s) 406, 464, 928, 940
TspDTI ATGAA 4 cut(s) 158, 375, 601, 944
TspRI CASTG 5 cut(s) 267, 345, 918, 943, 1103
VpaK11BI GGWCC 2 cut(s) 1101, 1160
XapI RAATTY 3 cut(s) 593, 608, 1070
XceI RCATGY 3 cut(s) 388, 742, 756
XcmI CCANNNNNNNNNTGG 2 cut(s) 327, 546
XmiI GTMKAC 1 cut(s) 1050
XspI CTAG 5 cut(s) 68, 230, 302, 920, 1227
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.