Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0022324

Physical Location & Seq

Genomic Coordinates Forward (+)

13267332 .. 13267846

Gene Structure 515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

ATGGTAAAGTCCCTTGTTGGCGAATATGCTGCGGAAACCCATACAACAACGCAACTCCTCGTATTCTCCCCAACCCCAGCTGCAACTTCAAAGCCGCTTGCTTCCACCAAAAACCCTAGCGATTCTCCTTCCTTTTCGACGAAGCCGAATCGAAATCTGGATCTGTTAAGCCCTAATCGCAGCAATCTCACGGCATCGCGAGCTCCGTCCGCTGAAACTATAGCAAAGAATTTCGGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004379 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006497 GO:0006498 GO:0006499 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009653 GO:0009790 GO:0009987 GO:0010016 GO:0010064 GO:0016410 GO:0016740 GO:0016746 GO:0016747 GO:0018008 GO:0018193 GO:0018201 GO:0018377 GO:0019107 GO:0019538 GO:0031365 GO:0032501 GO:0032502 GO:0032991 GO:0034645 GO:0036211 GO:0040007 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048367 GO:0048598 GO:0048731 GO:0048856 GO:0071704 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko04011 ko04392 map04011 map04392

Pfam Domains

Protein Families

NMT NMT_C

Protein Analysis

80

Amino Acids

8.33

Weight (kDa)

9.69

Isoelectric Point (pI)

45.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0022324)

Species	Orthologous Gene IDs
malus_domestica	MD02G1120000.v1.1 MD09G1231300.v1.1 MD14G1168800.v1.1
pyrus_communis	pycom15g18690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	199
AciI	CCGC	3 cut(s)	32, 95, 210
AclWI	GGATC	1 cut(s)	168
AcsI	RAATTY	1 cut(s)	229
AgsI	TTSAA	1 cut(s)	90
AluBI	AGCT	2 cut(s)	80, 203
AluI	AGCT	2 cut(s)	80, 203
Alw21I	GWGCWC	1 cut(s)	205
AlwI	GGATC	1 cut(s)	168
ApeKI	GCWGC	3 cut(s)	29, 80, 180
ApoI	RAATTY	1 cut(s)	229
BanII	GRGCYC	1 cut(s)	205
Bbv12I	GWGCWC	1 cut(s)	205
BbvI	GCAGC	3 cut(s)	16, 67, 192
BceAI	ACGGC	1 cut(s)	207
BcgI	CGANNNNNNTGC	2 cut(s)	11, 45
BfaI	CTAG	1 cut(s)	117
BfmI	CTRYAG	1 cut(s)	219
BisI	GCNGC	4 cut(s)	30, 81, 95, 181
BlsI	GCNGC	4 cut(s)	31, 82, 96, 182
BmsI	GCATC	1 cut(s)	203
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	3 cut(s)	16, 67, 192
BseYI	CCCAGC	1 cut(s)	76
Bsh1236I	CGCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	205
Bsp1286I	GDGCHC	1 cut(s)	205
Bsp143I	GATC	1 cut(s)	160
Bsp68I	TCGCGA	1 cut(s)	199
BspACI	CCGC	3 cut(s)	32, 95, 210
BspFNI	CGCG	1 cut(s)	199
BspPI	GGATC	1 cut(s)	168
BssMI	GATC	1 cut(s)	160
BstC8I	GCNNGC	2 cut(s)	99, 201
BstFNI	CGCG	1 cut(s)	199
BstKTI	GATC	1 cut(s)	163
BstMBI	GATC	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	177, 200, 209
BstSFI	CTRYAG	1 cut(s)	219
BstUI	CGCG	1 cut(s)	199
BstV1I	GCAGC	3 cut(s)	16, 67, 192
BstX2I	RGATCY	1 cut(s)	160
BstYI	RGATCY	1 cut(s)	160
BtgZI	GCGATG	1 cut(s)	180
BtuMI	TCGCGA	1 cut(s)	199
Cac8I	GCNNGC	2 cut(s)	99, 201
CviJI	RGCY	5 cut(s)	80, 94, 145, 171, 203
CviKI_1	RGCY	5 cut(s)	80, 94, 145, 171, 203
DpnI	GATC	1 cut(s)	162
DpnII	GATC	1 cut(s)	160
Ecl136II	GAGCTC	1 cut(s)	203
Eco24I	GRGCYC	1 cut(s)	205
Eco53kI	GAGCTC	1 cut(s)	203
EcoICRI	GAGCTC	1 cut(s)	203
EcoT38I	GRGCYC	1 cut(s)	205
FaiI	YATR	3 cut(s)	27, 42, 221
Fnu4HI	GCNGC	4 cut(s)	30, 81, 95, 181
FriOI	GRGCYC	1 cut(s)	205
Fsp4HI	GCNGC	4 cut(s)	30, 81, 95, 181
FspBI	CTAG	1 cut(s)	117
GluI	GCNGC	4 cut(s)	30, 81, 95, 181
GsaI	CCCAGC	1 cut(s)	80
HinfI	GANTC	2 cut(s)	122, 148
Hpy188III	TCNNGA	2 cut(s)	158, 198
Hpy99I	CGWCG	1 cut(s)	142
HpyAV	CCTTC	1 cut(s)	138
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	3 cut(s)	177, 200, 209
Kzo9I	GATC	1 cut(s)	160
LmnI	GCTCC	1 cut(s)	208
LpnPI	CCDG	2 cut(s)	90, 143
Lsp1109I	GCAGC	3 cut(s)	16, 67, 192
LweI	GCATC	1 cut(s)	203
MaeI	CTAG	1 cut(s)	117
MalI	GATC	1 cut(s)	162
MboI	GATC	1 cut(s)	160
MflI	RGATCY	1 cut(s)	160
MhlI	GDGCHC	1 cut(s)	205
MluCI	AATT	1 cut(s)	229
MnlI	CCTC	1 cut(s)	68
MseI	TTAA	1 cut(s)	167
MspA1I	CMGCKG	2 cut(s)	80, 212
MvnI	CGCG	1 cut(s)	199
MwoI	GCNNNNNNNGC	3 cut(s)	177, 200, 209
NdeII	GATC	1 cut(s)	160
NruI	TCGCGA	1 cut(s)	199
PcsI	WCGNNNNNNNCGW	2 cut(s)	143, 203
PfeI	GAWTC	2 cut(s)	122, 148
PkrI	GCNGC	4 cut(s)	31, 82, 96, 182
Psp124BI	GAGCTC	1 cut(s)	205
PspFI	CCCAGC	1 cut(s)	76
PsuI	RGATCY	1 cut(s)	160
PvuII	CAGCTG	1 cut(s)	80
RruI	TCGCGA	1 cut(s)	199
SacI	GAGCTC	1 cut(s)	205
SaqAI	TTAA	1 cut(s)	167
SatI	GCNGC	4 cut(s)	30, 81, 95, 181
Sau3AI	GATC	1 cut(s)	160
SduI	GDGCHC	1 cut(s)	205
SetI	ASST	2 cut(s)	82, 205
SfaNI	GCATC	1 cut(s)	203
SfcI	CTRYAG	1 cut(s)	219
SgeI	CNNG	9 cut(s)	26, 71, 89, 110, 129, 170, 202, 210, 212
Sse9I	AATT	1 cut(s)	229
SsiI	CCGC	3 cut(s)	32, 95, 210
SspMI	CTAG	1 cut(s)	117
SstI	GAGCTC	1 cut(s)	205
TaqI	TCGA	2 cut(s)	137, 151
TasI	AATT	1 cut(s)	229
TauI	GCSGC	1 cut(s)	97
TfiI	GAWTC	2 cut(s)	122, 148
Tru1I	TTAA	1 cut(s)	167
Tru9I	TTAA	1 cut(s)	167
TseI	GCWGC	3 cut(s)	29, 80, 180
TspGWI	ACGGA	1 cut(s)	195
XapI	RAATTY	1 cut(s)	229
XspI	CTAG	1 cut(s)	117

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.