pycom15g26250

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0019178
Physical Location & Seq
Reverse (-)
21014983 .. 21016568
1586 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 312 bp
ATGCAGCAAACAGAGGGCAAATCGATTTCTTCCCAAAGTTGTGCTGCAAGCCGGTCTAAATTAAAAACCCTCAAAAAGCAAGAAGCTGAAAAACCCTCAATTTTGGCAAGCATACAAATTGGAACAAGAACCAGAGTGTTTTGTACAGAAATGTTTCGAAGAAGATTCCTCTCGTTTCCTTTGGTAATTGGAGCAGCCGTGATTGGAGTTGTTTCAGGCAAGGCAATATTTGGACCCCCACTTGATGAGTACTGGAAAAAGAAGCAGCAGGAAGACGTGGCGGCAAAGGAGACTGATGCAAGCTCAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

104

Amino Acids

11.34

Weight (kDa)

9.74

Isoelectric Point (pI)

60.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PIGBOS1 PF23670 51 - 102 5e-16 PIGBOS1-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019178)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G65880
malus_domestica MD02G1189100.v1.1
prunus_persica Prupe.6G217600_v2.0.a1 Prupe.6G217600_v2.0.a1
pyrus_communis pycom15g26250
rosa_chinensis RchiOBHm_Chr2g0108561
rosa_roxburghii Rroxscaffold_2G00135020
rosa_wichuraiana Rw2G016250

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 281
AfaI GTAC 2 cut(s) 145, 251
AjiI CACGTC 1 cut(s) 277
AluBI AGCT 2 cut(s) 86, 303
AluI AGCT 2 cut(s) 86, 303
Alw26I GTCTC 1 cut(s) 284
ApeKI GCWGC 4 cut(s) 4, 44, 194, 265
Asp700I GAANNNNTTC 1 cut(s) 153
AspS9I GGNCC 1 cut(s) 233
AsuII TTCGAA 1 cut(s) 157
AvaII GGWCC 1 cut(s) 233
BbsI GAAGAC 1 cut(s) 279
BbvI GCAGC 4 cut(s) 16, 31, 206, 277
BceAI ACGGC 1 cut(s) 182
BcoDI GTCTC 1 cut(s) 284
BisI GCNGC 5 cut(s) 5, 45, 195, 266, 282
BlsI GCNGC 5 cut(s) 6, 46, 196, 267, 283
BmcAI AGTACT 1 cut(s) 251
Bme18I GGWCC 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 277
BmgT120I GGNCC 1 cut(s) 233
BmiI GGNNCC 1 cut(s) 235
BmsI GCATC 1 cut(s) 286
BpiI GAAGAC 1 cut(s) 279
Bpu14I TTCGAA 1 cut(s) 157
Bsa29I ATCGAT 1 cut(s) 23
BsaXI ACNNNNNCTCC 2 cut(s) 183, 213
Bse118I RCCGGY 1 cut(s) 51
Bse1I ACTGG 1 cut(s) 257
BseCI ATCGAT 1 cut(s) 23
BseNI ACTGG 1 cut(s) 257
BseXI GCAGC 4 cut(s) 16, 31, 206, 277
BshVI ATCGAT 1 cut(s) 23
BsiSI CCGG 1 cut(s) 52
BsmAI GTCTC 1 cut(s) 284
Bsp119I TTCGAA 1 cut(s) 157
Bsp1407I TGTACA 1 cut(s) 143
BspACI CCGC 1 cut(s) 281
BspDI ATCGAT 1 cut(s) 23
BspLI GGNNCC 1 cut(s) 235
BspT104I TTCGAA 1 cut(s) 157
BsrFI RCCGGY 1 cut(s) 51
BsrGI TGTACA 1 cut(s) 143
BsrI ACTGG 1 cut(s) 257
BssAI RCCGGY 1 cut(s) 51
BstAUI TGTACA 1 cut(s) 143
BstBI TTCGAA 1 cut(s) 157
BstC8I GCNNGC 3 cut(s) 49, 109, 301
BstMAI GTCTC 1 cut(s) 284
BstV1I GCAGC 4 cut(s) 16, 31, 206, 277
BstV2I GAAGAC 1 cut(s) 279
Bsu15I ATCGAT 1 cut(s) 23
BsuTUI ATCGAT 1 cut(s) 23
BtrI CACGTC 1 cut(s) 277
Cac8I GCNNGC 3 cut(s) 49, 109, 301
Cfr10I RCCGGY 1 cut(s) 51
Cfr13I GGNCC 1 cut(s) 233
ClaI ATCGAT 1 cut(s) 23
Csp6I GTAC 2 cut(s) 144, 250
CviJI RGCY 4 cut(s) 51, 86, 197, 303
CviKI_1 RGCY 4 cut(s) 51, 86, 197, 303
CviQI GTAC 2 cut(s) 144, 250
Eco47I GGWCC 1 cut(s) 233
FaiI YATR 1 cut(s) 113
Fnu4HI GCNGC 5 cut(s) 5, 45, 195, 266, 282
Fsp4HI GCNGC 5 cut(s) 5, 45, 195, 266, 282
GluI GCNGC 5 cut(s) 5, 45, 195, 266, 282
HapII CCGG 1 cut(s) 52
HinfI GANTC 1 cut(s) 165
HpaII CCGG 1 cut(s) 52
HpyCH4IV ACGT 1 cut(s) 276
HpyCH4V TGCA 3 cut(s) 4, 47, 299
HpySE526I ACGT 1 cut(s) 276
LmnI GCTCC 1 cut(s) 191
LpnPI CCDG 5 cut(s) 65, 145, 201, 238, 254
Lsp1109I GCAGC 4 cut(s) 16, 31, 206, 277
LweI GCATC 1 cut(s) 286
MaeII ACGT 1 cut(s) 276
MboII GAAGA 4 cut(s) 21, 171, 174, 284
MluCI AATT 5 cut(s) 59, 99, 117, 186, 307
MnlI CCTC 4 cut(s) 7, 80, 106, 179
MroXI GAANNNNTTC 1 cut(s) 153
MseI TTAA 2 cut(s) 62, 310
MspI CCGG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 235
NspV TTCGAA 1 cut(s) 157
PdmI GAANNNNTTC 1 cut(s) 153
PfeI GAWTC 1 cut(s) 165
PkrI GCNGC 5 cut(s) 6, 46, 196, 267, 283
PspN4I GGNNCC 1 cut(s) 235
PspPI GGNCC 1 cut(s) 233
RsaI GTAC 2 cut(s) 145, 251
RsaNI GTAC 2 cut(s) 144, 250
SaqAI TTAA 2 cut(s) 62, 310
SatI GCNGC 5 cut(s) 5, 45, 195, 266, 282
Sau96I GGNCC 1 cut(s) 233
ScaI AGTACT 1 cut(s) 251
SetI ASST 3 cut(s) 88, 279, 305
SfaNI GCATC 1 cut(s) 286
SfuI TTCGAA 1 cut(s) 157
SinI GGWCC 1 cut(s) 233
Sse9I AATT 5 cut(s) 59, 99, 117, 186, 307
SsiI CCGC 1 cut(s) 281
SspI AATATT 1 cut(s) 228
TaiI ACGT 1 cut(s) 279
TaqI TCGA 2 cut(s) 23, 157
TasI AATT 5 cut(s) 59, 99, 117, 186, 307
TatI WGTACW 2 cut(s) 143, 249
TauI GCSGC 1 cut(s) 284
TfiI GAWTC 1 cut(s) 165
Tru1I TTAA 2 cut(s) 62, 310
Tru9I TTAA 2 cut(s) 62, 310
TseI GCWGC 4 cut(s) 4, 44, 194, 265
VpaK11BI GGWCC 1 cut(s) 233
XmnI GAANNNNTTC 1 cut(s) 153
ZrmI AGTACT 1 cut(s) 251
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.