Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005511

Physical Location & Seq

Genomic Coordinates Forward (+)

1460119 .. 1463095

Gene Structure 2977 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02270.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGGAGAAGTCTCCCATGATAAAAGAGAGGATTGCTGCTCTCCCACAAGGATTAACATCCAGGAGCAGCAGTCCACCACGGACATGCAGCAGCAGCAGCACCATCACTGCATGGAAATCCCAATGGGGATGGAGTTGCACAAAGTAGTTGCCCCGCCTTACAGAAGCACTTTTCGTAAGCTGCTGGCCAAGCTCAAAGAAACATTCTTTCCAGATGACCCTCTTTACCAATTCAAAGGTCAGCCACCAAAGAAAAAATGGATTCTTGGAGCTCAGTATGTCTTTCCAATCCTTGAGTGGGGCCCGAATTACAGCTTCAAGCTCCTCAAATCAGACATCATTTCTGGTGTCACCATCGCCAGTTTAGCCATCCCTCAGGGAATCAGTTATGCTAAGCTTGCGAATCTACCTCCGATTGTGGGTCTCTATTCCAGCTTCGTTCCTCCTTTGCTGTATGCTGTCCTTGGAAGCTCAAAGGATCTTGCAGTAGGACCTGTTTCCATTGCTTCCCTAATCATGGGATCGATGCTCATGCAAGAAGTATCTCCCACCAAAGAACCCTACTTGTTCCTCCAACTTGCCTTCACTTCAACCTTCTTTAGTGGCATCCTCCAAGCTTCCCTAGGTTTATTAAGGCTTGGATTTATAATCGATTTTCTTTCAAAGGCTACTCTACTTGGTTTCATGGCCGGAGCTGCTGTGATAGTCTCTCTACAACAGCTTAAGAGTCTCCTTGGAATCACACATTTCACCAAGAAAATGGCAATCATCCCTGTTCTTAGCTCTGTTTTTCATGAAAGAAAGGAGTGGTCATGGCAAACCATTGTAATGGGCGTTTGCTTCCTTGTGCTGCTCCTAATCGCAAGACACGTTAGCATAAAGAAGCCAAAGCTGTTCTGGGTCTCAGCTGGAGCCCCTCTGGTGTCTGTGATCATTTCCACTGTGATTGTCTTTGCATTCAAAGCCGATCGCCATGGCATCAGTGTGATTGGAGAATTAGAGAAAGGACTGAACCCACCATCATGGAACATGTTGGTTTTCCATGGATCCCACCTTGCACTTGCAATCAAGACTGGGATTATCACTGGCATTATTGCCCTCACTGAAGGTATTGCAGTAGGAAGAACTTTTGCTAATATAAGAGAATACAGAGTGGATGGAAACAAGGAGATGATAGCAATTGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

396

Amino Acids

43.57

Weight (kDa)

9.41

Isoelectric Point (pI)

29.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23090 AT1G23090 AT1G23090 AT1G23090
fragaria_vesca	FvH4_4g32600 FvH4_4g32600 FvH4_4g32600 FvH4_4g32600 FvH4_4g32600
malus_domestica	MD13G1024300.v1.1 MD16G1027000.v1.1
prunus_persica	Prupe.1G326200_v2.0.a1 Prupe.1G326200_v2.0.a1
pyrus_communis	pycom13g02260 pycom16g02270 pycom16g02280
rosa_chinensis	RchiOBHm_Chr4g0441461
rosa_laevigata	RLG00000006090
rosa_multiflora	Rmu_sc0003360.1_g000008
rosa_roxburghii	Rroxscaffold_5G00382330
rosa_rugosa	Rorug04G0333900 Rorug04G0334000 Rorug04G0334100 Rorug04G0334100
rosa_samantha	Rh4AG385400 Rh4BG399600 Rh4CG414600 Rh4DG392200
rosa_wichuraiana	Rw4G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	647
AciI	CCGC	1 cut(s)	155
AclWI	GGATC	4 cut(s)	486, 529, 1041, 1054
AcoI	YGGCCR	2 cut(s)	186, 687
AcuI	CTGAAG	1 cut(s)	1125
AfiI	CCNNNNNNNGG	3 cut(s)	298, 419, 517
AflII	CTTAAG	1 cut(s)	722
AflIII	ACRYGT	2 cut(s)	868, 1029
AgsI	TTSAA	5 cut(s)	235, 319, 591, 663, 961
AjnI	CCWGG	1 cut(s)	60
Alw21I	GWGCWC	1 cut(s)	274
Alw26I	GTCTC	5 cut(s)	16, 428, 712, 734, 907
AlwI	GGATC	4 cut(s)	486, 529, 1041, 1054
AoxI	GGCC	3 cut(s)	186, 301, 687
ApaI	GGGCCC	1 cut(s)	305
ApeKI	GCWGC	9 cut(s)	36, 67, 88, 91, 94, 97, 181, 695, 850
AspA2I	CCTAGG	1 cut(s)	622
AspS9I	GGNCC	3 cut(s)	301, 302, 491
AsuHPI	GGTGA	2 cut(s)	343, 742
AvaII	GGWCC	1 cut(s)	491
AvrII	CCTAGG	1 cut(s)	622
AxyI	CCTNAGG	1 cut(s)	375
BaeGI	GKGCMC	1 cut(s)	305
BalI	TGGCCA	1 cut(s)	188
BamHI	GGATCC	1 cut(s)	1046
BanII	GRGCYC	3 cut(s)	274, 305, 916
Bbv12I	GWGCWC	1 cut(s)	274
BbvI	GCAGC	9 cut(s)	23, 79, 100, 103, 106, 109, 168, 682, 837
BccI	CCATC	6 cut(s)	111, 124, 362, 377, 1027, 1151
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	1 cut(s)	62
BclI	TGATCA	1 cut(s)	930
BcoDI	GTCTC	5 cut(s)	16, 428, 712, 734, 907
BfaI	CTAG	1 cut(s)	623
BfrI	CTTAAG	1 cut(s)	722
BisI	GCNGC	9 cut(s)	37, 68, 89, 92, 95, 98, 182, 696, 851
BlnI	CCTAGG	1 cut(s)	622
BlpI	GCTNAGC	1 cut(s)	393
BlsI	GCNGC	9 cut(s)	38, 69, 90, 93, 96, 99, 183, 697, 852
Bme1390I	CCNGG	1 cut(s)	62
Bme18I	GGWCC	1 cut(s)	491
BmgT120I	GGNCC	3 cut(s)	301, 302, 491
BmiI	GGNNCC	4 cut(s)	302, 303, 913, 1048
BmrFI	CCNGG	1 cut(s)	62
BmrI	ACTGGG	1 cut(s)	1083
BmsI	GCATC	3 cut(s)	516, 615, 987
BmuI	ACTGGG	1 cut(s)	1083
BpmI	CTGGAG	1 cut(s)	930
Bpu1102I	GCTNAGC	1 cut(s)	393
BpuEI	CTTGAG	1 cut(s)	314
Bsa29I	ATCGAT	2 cut(s)	524, 651
BsaBI	GATNNNNATC	1 cut(s)	56
BsaI	GGTCTC	2 cut(s)	428, 907
BsaJI	CCNNGG	6 cut(s)	78, 463, 622, 733, 973, 1042
BsaXI	ACNNNNNCTCC	4 cut(s)	56, 86, 684, 714
Bsc4I	CCNNNNNNNGG	3 cut(s)	298, 419, 517
Bse1I	ACTGG	3 cut(s)	360, 1078, 1090
Bse21I	CCTNAGG	1 cut(s)	375
Bse3DI	GCAATG	1 cut(s)	501
Bse8I	GATNNNNATC	1 cut(s)	56
BseBI	CCWGG	1 cut(s)	62
BseCI	ATCGAT	2 cut(s)	524, 651
BseDI	CCNNGG	6 cut(s)	78, 463, 622, 733, 973, 1042
BseGI	GGATG	6 cut(s)	57, 135, 369, 606, 768, 1162
BseJI	GATNNNNATC	1 cut(s)	56
BseLI	CCNNNNNNNGG	3 cut(s)	298, 419, 517
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	3 cut(s)	287, 389, 918
BseNI	ACTGG	3 cut(s)	360, 1078, 1090
BseRI	GAGGAG	1 cut(s)	314
BseSI	GKGCMC	1 cut(s)	305
BseXI	GCAGC	9 cut(s)	23, 79, 100, 103, 106, 109, 168, 682, 837
Bsh1285I	CGRYCG	1 cut(s)	970
BshFI	GGCC	3 cut(s)	188, 303, 689
BshVI	ATCGAT	2 cut(s)	524, 651
BsiEI	CGRYCG	1 cut(s)	970
BsiHKAI	GWGCWC	1 cut(s)	274
BsiSI	CCGG	1 cut(s)	690
BslI	CCNNNNNNNGG	3 cut(s)	298, 419, 517
BsmAI	GTCTC	5 cut(s)	16, 428, 712, 734, 907
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	3 cut(s)	188, 303, 689
Bso31I	GGTCTC	2 cut(s)	428, 907
Bsp120I	GGGCCC	1 cut(s)	301
Bsp1286I	GDGCHC	3 cut(s)	274, 305, 916
Bsp143I	GATC	5 cut(s)	478, 521, 930, 967, 1046
Bsp1720I	GCTNAGC	1 cut(s)	393
Bsp19I	CCATGG	2 cut(s)	973, 1042
BspACI	CCGC	1 cut(s)	155
BspANI	GGCC	3 cut(s)	188, 303, 689
BspCNI	CTCAG	3 cut(s)	286, 388, 917
BspDI	ATCGAT	2 cut(s)	524, 651
BspHI	TCATGA	1 cut(s)	793
BspLI	GGNNCC	4 cut(s)	302, 303, 913, 1048
BspPI	GGATC	4 cut(s)	486, 529, 1041, 1054
BspTI	CTTAAG	1 cut(s)	722
BspTNI	GGTCTC	2 cut(s)	428, 907
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	3 cut(s)	360, 1078, 1090
BssECI	CCNNGG	6 cut(s)	78, 463, 622, 733, 973, 1042
BssMI	GATC	5 cut(s)	478, 521, 930, 967, 1046
BssT1I	CCWWGG	5 cut(s)	463, 622, 733, 973, 1042
Bst2UI	CCWGG	1 cut(s)	62
Bst4CI	ACNGT	1 cut(s)	943
BstAFI	CTTAAG	1 cut(s)	722
BstC8I	GCNNGC	2 cut(s)	186, 399
BstDEI	CTNAG	5 cut(s)	273, 375, 393, 779, 904
BstDSI	CCRYGG	3 cut(s)	78, 973, 1042
BstF5I	GGATG	6 cut(s)	57, 135, 369, 606, 768, 1162
BstKTI	GATC	5 cut(s)	481, 524, 933, 970, 1049
BstMAI	GTCTC	5 cut(s)	16, 428, 712, 734, 907
BstMBI	GATC	5 cut(s)	478, 521, 930, 967, 1046
BstMCI	CGRYCG	1 cut(s)	970
BstMWI	GCNNNNNNNGC	7 cut(s)	94, 97, 190, 365, 398, 695, 962
BstNI	CCWGG	1 cut(s)	62
BstNSI	RCATGY	2 cut(s)	88, 1033
BstSCI	CCNGG	1 cut(s)	60
BstSLI	GKGCMC	1 cut(s)	305
BstV1I	GCAGC	9 cut(s)	23, 79, 100, 103, 106, 109, 168, 682, 837
BstX2I	RGATCY	2 cut(s)	478, 1046
BstXI	CCANNNNNNTGG	3 cut(s)	760, 829, 1023
BstYI	RGATCY	2 cut(s)	478, 1046
Bsu15I	ATCGAT	2 cut(s)	524, 651
Bsu36I	CCTNAGG	1 cut(s)	375
BsuRI	GGCC	3 cut(s)	188, 303, 689
BsuTUI	ATCGAT	2 cut(s)	524, 651
BtgI	CCRYGG	3 cut(s)	78, 973, 1042
BtgZI	GCGATG	1 cut(s)	340
BtsCI	GGATG	6 cut(s)	57, 135, 369, 606, 768, 1162
BtsI	GCAGTG	1 cut(s)	106
BtsIMutI	CAGTG	5 cut(s)	106, 939, 988, 1083, 1101
Cac8I	GCNNGC	2 cut(s)	186, 399
CciI	TCATGA	1 cut(s)	793
Cfr13I	GGNCC	3 cut(s)	301, 302, 491
ClaI	ATCGAT	2 cut(s)	524, 651
CspCI	CAANNNNNGTGG	2 cut(s)	928, 963
DdeI	CTNAG	5 cut(s)	273, 375, 393, 779, 904
DpnI	GATC	5 cut(s)	480, 523, 932, 969, 1048
DpnII	GATC	5 cut(s)	478, 521, 930, 967, 1046
EaeI	YGGCCR	2 cut(s)	186, 687
Ecl136II	GAGCTC	1 cut(s)	272
Eco130I	CCWWGG	5 cut(s)	463, 622, 733, 973, 1042
Eco24I	GRGCYC	3 cut(s)	274, 305, 916
Eco31I	GGTCTC	2 cut(s)	428, 907
Eco47I	GGWCC	1 cut(s)	491
Eco53kI	GAGCTC	1 cut(s)	272
Eco57I	CTGAAG	1 cut(s)	1125
Eco81I	CCTNAGG	1 cut(s)	375
EcoICRI	GAGCTC	1 cut(s)	272
EcoO109I	RGGNCCY	2 cut(s)	301, 491
EcoRII	CCWGG	1 cut(s)	60
EcoT14I	CCWWGG	5 cut(s)	463, 622, 733, 973, 1042
EcoT38I	GRGCYC	3 cut(s)	274, 305, 916
ErhI	CCWWGG	5 cut(s)	463, 622, 733, 973, 1042
FauI	CCCGC	1 cut(s)	162
FbaI	TGATCA	1 cut(s)	930
Fnu4HI	GCNGC	9 cut(s)	37, 68, 89, 92, 95, 98, 182, 696, 851
FokI	GGATG	6 cut(s)	44, 142, 356, 593, 755, 1169
FriOI	GRGCYC	3 cut(s)	274, 305, 916
Fsp4HI	GCNGC	9 cut(s)	37, 68, 89, 92, 95, 98, 182, 696, 851
FspBI	CTAG	1 cut(s)	623
GluI	GCNGC	9 cut(s)	37, 68, 89, 92, 95, 98, 182, 696, 851
GsuI	CTGGAG	1 cut(s)	930
HaeIII	GGCC	3 cut(s)	188, 303, 689
HapII	CCGG	1 cut(s)	690
HindIII	AAGCTT	2 cut(s)	395, 615
HinfI	GANTC	5 cut(s)	262, 381, 403, 727, 738
HpaII	CCGG	1 cut(s)	690
HphI	GGTGA	2 cut(s)	343, 742
Hpy166II	GTNNAC	1 cut(s)	75
Hpy188I	TCNGA	2 cut(s)	334, 414
Hpy188III	TCNNGA	3 cut(s)	212, 794, 1069
Hpy8I	GTNNAC	1 cut(s)	75
HpyAV	CCTTC	3 cut(s)	592, 604, 1100
HpyCH4III	ACNGT	1 cut(s)	943
HpyCH4IV	ACGT	1 cut(s)	870
HpyCH4V	TGCA	9 cut(s)	88, 111, 139, 485, 535, 956, 1058, 1064, 1115
HpyF10VI	GCNNNNNNNGC	7 cut(s)	94, 97, 190, 365, 398, 695, 962
HpyF3I	CTNAG	5 cut(s)	273, 375, 393, 779, 904
HpySE526I	ACGT	1 cut(s)	870
Ksp22I	TGATCA	1 cut(s)	930
Kzo9I	GATC	5 cut(s)	478, 521, 930, 967, 1046
LmnI	GCTCC	6 cut(s)	64, 269, 327, 692, 858, 911
Lsp1109I	GCAGC	9 cut(s)	23, 79, 100, 103, 106, 109, 168, 682, 837
LweI	GCATC	3 cut(s)	516, 615, 987
MaeI	CTAG	1 cut(s)	623
MaeII	ACGT	1 cut(s)	870
MaeIII	GTNAC	1 cut(s)	349
MalI	GATC	5 cut(s)	480, 523, 932, 969, 1048
MboI	GATC	5 cut(s)	478, 521, 930, 967, 1046
MboII	GAAGA	1 cut(s)	1134
MfeI	CAATTG	1 cut(s)	1179
MflI	RGATCY	2 cut(s)	478, 1046
MhlI	GDGCHC	3 cut(s)	274, 305, 916
MlsI	TGGCCA	1 cut(s)	188
MluCI	AATT	4 cut(s)	230, 307, 995, 1179
MluNI	TGGCCA	1 cut(s)	188
MlyI	GAGTC	1 cut(s)	736
MmeI	TCCRAC	1 cut(s)	598
Mox20I	TGGCCA	1 cut(s)	188
MscI	TGGCCA	1 cut(s)	188
MseI	TTAA	3 cut(s)	54, 632, 723
MslI	CAYNNNNRTG	4 cut(s)	83, 827, 983, 1021
Msp20I	TGGCCA	1 cut(s)	188
MspA1I	CMGCKG	1 cut(s)	908
MspCI	CTTAAG	1 cut(s)	722
MspI	CCGG	1 cut(s)	690
MspR9I	CCNGG	1 cut(s)	62
MunI	CAATTG	1 cut(s)	1179
Mva1269I	GAATGC	1 cut(s)	956
MvaI	CCWGG	1 cut(s)	62
MwoI	GCNNNNNNNGC	7 cut(s)	94, 97, 190, 365, 398, 695, 962
NcoI	CCATGG	2 cut(s)	973, 1042
NdeII	GATC	5 cut(s)	478, 521, 930, 967, 1046
NlaIV	GGNNCC	4 cut(s)	302, 303, 913, 1048
NmuCI	GTSAC	1 cut(s)	349
NspI	RCATGY	2 cut(s)	88, 1033
PagI	TCATGA	1 cut(s)	793
PciI	ACATGT	1 cut(s)	1029
PcsI	WCGNNNNNNNCGW	1 cut(s)	867
PctI	GAATGC	1 cut(s)	956
PfeI	GAWTC	4 cut(s)	262, 381, 403, 738
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	9 cut(s)	38, 69, 90, 93, 96, 99, 183, 697, 852
Ple19I	CGATCG	1 cut(s)	970
PleI	GAGTC	1 cut(s)	735
PpsI	GAGTC	1 cut(s)	735
PpuMI	RGGWCCY	1 cut(s)	491
PscI	ACATGT	1 cut(s)	1029
PsiI	TTATAA	1 cut(s)	647
Psp124BI	GAGCTC	1 cut(s)	274
Psp5II	RGGWCCY	1 cut(s)	491
Psp6I	CCWGG	1 cut(s)	60
PspGI	CCWGG	1 cut(s)	60
PspN4I	GGNNCC	4 cut(s)	302, 303, 913, 1048
PspOMI	GGGCCC	1 cut(s)	301
PspPI	GGNCC	3 cut(s)	301, 302, 491
PspPPI	RGGWCCY	1 cut(s)	491
PsuI	RGATCY	2 cut(s)	478, 1046
PvuI	CGATCG	1 cut(s)	970
PvuII	CAGCTG	1 cut(s)	908
RseI	CAYNNNNRTG	4 cut(s)	83, 827, 983, 1021
SacI	GAGCTC	1 cut(s)	274
SaqAI	TTAA	3 cut(s)	54, 632, 723
SatI	GCNGC	9 cut(s)	37, 68, 89, 92, 95, 98, 182, 696, 851
Sau3AI	GATC	5 cut(s)	478, 521, 930, 967, 1046
Sau96I	GGNCC	3 cut(s)	301, 302, 491
SchI	GAGTC	1 cut(s)	736
ScrFI	CCNGG	1 cut(s)	62
SduI	GDGCHC	3 cut(s)	274, 305, 916
SfaNI	GCATC	3 cut(s)	516, 615, 987
SinI	GGWCC	1 cut(s)	491
SmiMI	CAYNNNNRTG	4 cut(s)	83, 827, 983, 1021
SmlI	CTYRAG	2 cut(s)	293, 722
SmoI	CTYRAG	2 cut(s)	293, 722
Sse9I	AATT	4 cut(s)	230, 307, 995, 1179
SsiI	CCGC	1 cut(s)	155
SspMI	CTAG	1 cut(s)	623
SstI	GAGCTC	1 cut(s)	274
StyD4I	CCNGG	1 cut(s)	60
StyI	CCWWGG	5 cut(s)	463, 622, 733, 973, 1042
TaaI	ACNGT	1 cut(s)	943
TaiI	ACGT	1 cut(s)	873
TaqI	TCGA	2 cut(s)	524, 651
TasI	AATT	4 cut(s)	230, 307, 995, 1179
TfiI	GAWTC	4 cut(s)	262, 381, 403, 738
Tru1I	TTAA	3 cut(s)	54, 632, 723
Tru9I	TTAA	3 cut(s)	54, 632, 723
TscAI	CASTG	5 cut(s)	113, 946, 988, 1090, 1108
TseFI	GTSAC	1 cut(s)	349
TseI	GCWGC	9 cut(s)	36, 67, 88, 91, 94, 97, 181, 695, 850
Tsp45I	GTSAC	1 cut(s)	349
TspDTI	ATGAA	3 cut(s)	673, 782, 810
TspGWI	ACGGA	1 cut(s)	95
TspRI	CASTG	5 cut(s)	113, 946, 988, 1090, 1108
Vha464I	CTTAAG	1 cut(s)	722
VpaK11BI	GGWCC	1 cut(s)	491
XceI	RCATGY	2 cut(s)	88, 1033
XcmI	CCANNNNNNNNNTGG	3 cut(s)	255, 294, 894
XmaJI	CCTAGG	1 cut(s)	622
XspI	CTAG	1 cut(s)	623

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.