Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005511

Physical Location & Seq

Genomic Coordinates Forward (+)

1463616 .. 1464958

Gene Structure 1343 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g02280.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCGAACATAGTAATGTCGCTGACAGTTATGGTGACACTGCTGTTTCTGATGCCTCTGTTCCATTACACTCCCAATGTAATTCTGGGTGCAATTATCGTGACTGCTGTGGTCGGCCTCATTGATGTCCCAGCTGCTTACCACATATGGAAGATCGACAAATATGACTTCCTAGTCTTGATCTGTGCCTTCTTGGGAGTCATCTTTCTCTCTGTCCAACAAGGCCTCGCCATAGCGGTTGGGATATCGGTTTTCAAGGTTTTGCTGCAAGTGACGAGGCCGAGGACGGTGGTGTTGGGAAACATACCGGGAACGGACGTATTCAGAGACCTGCACCAGTACAACGAATCGGCAGTGAGTGTGCCTGGTTTCCTAATCATACTCATCGAAGCTGCCATCAACTTTGCCAACACTACTTATCTCAATGAACGGATTTTGAGATGGATAGAAGAAGAAGGTGACGGGAACAAGGTTGAAAACATTAGATTTGTTGTTGTAGATATGTCAGCTGTGAGCACAATCGACACAACTGGGATCACACTTTTCGAAGATATAAGGAAATCAATCCGAAAGAAGGGGATTAAGCTGGTGCTGGTAAATCCACTGGCGGAGGTGATGGACAAACTGCAGAAGGTGAATAACGGAGACGAAGAATTCATGCTTTACTTGTCCGTCGGAGAGGCAGTGGCTTCTCTGTCGATGGGAATGAAGAATTCAAACATGTACAATGAAGAAATGCAGGCCCATGATGTTCCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0008150 GO:0008272 GO:0008509 GO:0015075 GO:0015103 GO:0015116 GO:0015318 GO:0015698 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944 GO:0072348 GO:0098656 GO:0098660 GO:0098661 GO:1901682 GO:1902358

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

STAS Sulfate_transp

Protein Analysis

253

Amino Acids

27.99

Weight (kDa)

5.11

Isoelectric Point (pI)

36.88

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005511)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G23090 AT1G23090 AT1G23090 AT1G23090
fragaria_vesca	FvH4_4g32600 FvH4_4g32600 FvH4_4g32600 FvH4_4g32600 FvH4_4g32600
malus_domestica	MD13G1024300.v1.1 MD16G1027000.v1.1
prunus_persica	Prupe.1G326200_v2.0.a1 Prupe.1G326200_v2.0.a1
pyrus_communis	pycom13g02260 pycom16g02270 pycom16g02280
rosa_chinensis	RchiOBHm_Chr4g0441461
rosa_laevigata	RLG00000006090
rosa_multiflora	Rmu_sc0003360.1_g000008
rosa_roxburghii	Rroxscaffold_5G00382330
rosa_rugosa	Rorug04G0333900 Rorug04G0334000 Rorug04G0334100 Rorug04G0334100
rosa_samantha	Rh4AG385400 Rh4BG399600 Rh4CG414600 Rh4DG392200
rosa_wichuraiana	Rw4G033290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	339
AciI	CCGC	2 cut(s)	236, 608
AclWI	GGATC	1 cut(s)	542
AcsI	RAATTY	2 cut(s)	653, 712
AfaI	GTAC	2 cut(s)	341, 725
AfiI	CCNNNNNNNGG	1 cut(s)	574
AflIII	ACRYGT	1 cut(s)	720
AgsI	TTSAA	3 cut(s)	256, 476, 717
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	4 cut(s)	134, 392, 509, 586
AluI	AGCT	4 cut(s)	134, 392, 509, 586
Alw21I	GWGCWC	1 cut(s)	518
Alw26I	GTCTC	2 cut(s)	321, 639
AlwI	GGATC	1 cut(s)	542
AoxI	GGCC	4 cut(s)	115, 223, 278, 741
ApeKI	GCWGC	3 cut(s)	134, 265, 392
ApoI	RAATTY	2 cut(s)	653, 712
AspS9I	GGNCC	1 cut(s)	742
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	4 cut(s)	46, 470, 625, 646
AsuII	TTCGAA	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	518
BbvI	GCAGC	3 cut(s)	121, 252, 379
BccI	CCATC	4 cut(s)	404, 435, 610, 694
BciT130I	CCWGG	1 cut(s)	366
BcnI	CCSGG	1 cut(s)	309
BcoDI	GTCTC	2 cut(s)	321, 639
BfaI	CTAG	1 cut(s)	173
BfmI	CTRYAG	1 cut(s)	626
BfuAI	ACCTGC	1 cut(s)	339
BisI	GCNGC	3 cut(s)	135, 266, 393
BlsI	GCNGC	3 cut(s)	136, 267, 394
Bme1390I	CCNGG	2 cut(s)	309, 366
BmgT120I	GGNCC	1 cut(s)	742
BmrFI	CCNGG	2 cut(s)	309, 366
BmrI	ACTGGG	1 cut(s)	540
BmsI	GCATC	1 cut(s)	42
BmuI	ACTGGG	1 cut(s)	540
Bpu14I	TTCGAA	1 cut(s)	546
BpuMI	CCSGG	1 cut(s)	309
BsaI	GGTCTC	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	281
BsaXI	ACNNNNNCTCC	2 cut(s)	669, 699
Bsc4I	CCNNNNNNNGG	1 cut(s)	574
Bse1I	ACTGG	3 cut(s)	337, 535, 609
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	1 cut(s)	281
BseLI	CCNNNNNNNGG	1 cut(s)	574
BseNI	ACTGG	3 cut(s)	337, 535, 609
BseXI	GCAGC	3 cut(s)	121, 252, 379
BseYI	CCCAGC	1 cut(s)	130
BsgI	GTGCAG	1 cut(s)	317
BshFI	GGCC	4 cut(s)	117, 225, 280, 743
BsiHKAI	GWGCWC	1 cut(s)	518
BsiSI	CCGG	1 cut(s)	308
BslFI	GGGAC	1 cut(s)	113
BslI	CCNNNNNNNGG	1 cut(s)	574
BsmAI	GTCTC	2 cut(s)	321, 639
BsmBI	CGTCTC	1 cut(s)	639
BsmFI	GGGAC	1 cut(s)	113
BsnI	GGCC	4 cut(s)	117, 225, 280, 743
Bso31I	GGTCTC	1 cut(s)	321
Bsp119I	TTCGAA	1 cut(s)	546
Bsp1286I	GDGCHC	1 cut(s)	518
Bsp1407I	TGTACA	1 cut(s)	723
Bsp143I	GATC	3 cut(s)	153, 180, 534
BspACI	CCGC	2 cut(s)	236, 608
BspANI	GGCC	4 cut(s)	117, 225, 280, 743
BspMAI	CTGCAG	1 cut(s)	630
BspMI	ACCTGC	1 cut(s)	339
BspPI	GGATC	1 cut(s)	542
BspT104I	TTCGAA	1 cut(s)	546
BspTNI	GGTCTC	1 cut(s)	321
BsrGI	TGTACA	1 cut(s)	723
BsrI	ACTGG	3 cut(s)	337, 535, 609
BssECI	CCNNGG	1 cut(s)	281
BssMI	GATC	3 cut(s)	153, 180, 534
Bst2UI	CCWGG	1 cut(s)	366
Bst4CI	ACNGT	2 cut(s)	28, 289
BstAUI	TGTACA	1 cut(s)	723
BstBI	TTCGAA	1 cut(s)	546
BstC8I	GCNNGC	1 cut(s)	741
BstKTI	GATC	3 cut(s)	156, 183, 537
BstMAI	GTCTC	2 cut(s)	321, 639
BstMBI	GATC	3 cut(s)	153, 180, 534
BstNI	CCWGG	1 cut(s)	366
BstNSI	RCATGY	1 cut(s)	724
BstSCI	CCNGG	2 cut(s)	307, 364
BstSFI	CTRYAG	1 cut(s)	626
BstV1I	GCAGC	3 cut(s)	121, 252, 379
BsuRI	GGCC	4 cut(s)	117, 225, 280, 743
BtsI	GCAGTG	3 cut(s)	38, 360, 690
BtsIMutI	CAGTG	4 cut(s)	38, 360, 602, 690
BveI	ACCTGC	1 cut(s)	339
Cac8I	GCNNGC	1 cut(s)	741
Cfr13I	GGNCC	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	340, 724
CviAII	CATG	3 cut(s)	658, 721, 746
CviJI	RGCY	9 cut(s)	117, 134, 225, 280, 392, 509, 586, 689, 743
CviKI_1	RGCY	9 cut(s)	117, 134, 225, 280, 392, 509, 586, 689, 743
CviQI	GTAC	2 cut(s)	340, 724
DpnI	GATC	3 cut(s)	155, 182, 536
DpnII	GATC	3 cut(s)	153, 180, 534
DrdI	GACNNNNNNGTC	1 cut(s)	173
DseDI	GACNNNNNNGTC	1 cut(s)	173
EciI	GGCGGA	1 cut(s)	623
Eco147I	AGGCCT	1 cut(s)	225
Eco31I	GGTCTC	1 cut(s)	321
Eco32I	GATATC	1 cut(s)	246
EcoRI	GAATTC	2 cut(s)	653, 712
EcoRII	CCWGG	1 cut(s)	364
EcoRV	GATATC	1 cut(s)	246
Esp3I	CGTCTC	1 cut(s)	639
FaeI	CATG	3 cut(s)	661, 724, 749
FaqI	GGGAC	1 cut(s)	113
FatI	CATG	3 cut(s)	657, 720, 745
FauNDI	CATATG	1 cut(s)	146
Fnu4HI	GCNGC	3 cut(s)	135, 266, 393
Fsp4HI	GCNGC	3 cut(s)	135, 266, 393
FspBI	CTAG	1 cut(s)	173
GluI	GCNGC	3 cut(s)	135, 266, 393
GsaI	CCCAGC	1 cut(s)	134
HaeIII	GGCC	4 cut(s)	117, 225, 280, 743
HapII	CCGG	1 cut(s)	308
Hin1II	CATG	3 cut(s)	661, 724, 749
HinfI	GANTC	2 cut(s)	198, 347
HpaII	CCGG	1 cut(s)	308
HphI	GGTGA	4 cut(s)	46, 470, 625, 646
Hpy188I	TCNGA	4 cut(s)	51, 326, 569, 677
Hpy188III	TCNNGA	2 cut(s)	100, 178
Hpy99I	CGWCG	1 cut(s)	677
HpyAV	CCTTC	4 cut(s)	199, 449, 568, 625
HpyCH4III	ACNGT	2 cut(s)	28, 289
HpyCH4IV	ACGT	1 cut(s)	318
HpyCH4V	TGCA	5 cut(s)	92, 268, 334, 628, 739
HpySE526I	ACGT	1 cut(s)	318
Hsp92II	CATG	3 cut(s)	661, 724, 749
Kzo9I	GATC	3 cut(s)	153, 180, 534
Lsp1109I	GCAGC	3 cut(s)	121, 252, 379
LweI	GCATC	1 cut(s)	42
MaeI	CTAG	1 cut(s)	173
MaeII	ACGT	1 cut(s)	318
MaeIII	GTNAC	4 cut(s)	34, 100, 271, 458
MalI	GATC	3 cut(s)	155, 182, 536
MboI	GATC	3 cut(s)	153, 180, 534
MboII	GAAGA	7 cut(s)	163, 461, 464, 560, 662, 721, 743
MhlI	GDGCHC	1 cut(s)	518
MluCI	AATT	4 cut(s)	81, 93, 653, 712
MlyI	GAGTC	1 cut(s)	207
MmeI	TCCRAC	2 cut(s)	241, 655
MnlI	CCTC	7 cut(s)	66, 128, 236, 270, 276, 604, 673
MseI	TTAA	1 cut(s)	582
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	134, 509
MspI	CCGG	1 cut(s)	308
MspR9I	CCNGG	2 cut(s)	309, 366
MvaI	CCWGG	1 cut(s)	366
NciI	CCSGG	1 cut(s)	309
NdeI	CATATG	1 cut(s)	146
NdeII	GATC	3 cut(s)	153, 180, 534
NlaIII	CATG	3 cut(s)	661, 724, 749
NmeAIII	GCCGAG	1 cut(s)	306
NmuCI	GTSAC	4 cut(s)	34, 100, 271, 458
NspI	RCATGY	1 cut(s)	724
NspV	TTCGAA	1 cut(s)	546
PceI	AGGCCT	1 cut(s)	225
PciI	ACATGT	1 cut(s)	720
PfeI	GAWTC	1 cut(s)	347
PkrI	GCNGC	3 cut(s)	136, 267, 394
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
PscI	ACATGT	1 cut(s)	720
Psp6I	CCWGG	1 cut(s)	364
PspFI	CCCAGC	1 cut(s)	130
PspGI	CCWGG	1 cut(s)	364
PspPI	GGNCC	1 cut(s)	742
PstI	CTGCAG	1 cut(s)	630
PvuII	CAGCTG	2 cut(s)	134, 509
RsaI	GTAC	2 cut(s)	341, 725
RsaNI	GTAC	2 cut(s)	340, 724
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	1 cut(s)	582
SatI	GCNGC	3 cut(s)	135, 266, 393
Sau3AI	GATC	3 cut(s)	153, 180, 534
Sau96I	GGNCC	1 cut(s)	742
SchI	GAGTC	1 cut(s)	207
ScrFI	CCNGG	2 cut(s)	309, 366
SduI	GDGCHC	1 cut(s)	518
SfaNI	GCATC	1 cut(s)	42
SfcI	CTRYAG	1 cut(s)	626
SfuI	TTCGAA	1 cut(s)	546
SmiMI	CAYNNNNRTG	1 cut(s)	14
Sse9I	AATT	4 cut(s)	81, 93, 653, 712
SseBI	AGGCCT	1 cut(s)	225
SsiI	CCGC	2 cut(s)	236, 608
SspMI	CTAG	1 cut(s)	173
StuI	AGGCCT	1 cut(s)	225
StyD4I	CCNGG	2 cut(s)	307, 364
TaaI	ACNGT	2 cut(s)	28, 289
TaiI	ACGT	1 cut(s)	321
TaqI	TCGA	6 cut(s)	5, 156, 387, 522, 546, 698
TasI	AATT	4 cut(s)	81, 93, 653, 712
TatI	WGTACW	2 cut(s)	339, 723
TfiI	GAWTC	1 cut(s)	347
Tru1I	TTAA	1 cut(s)	582
Tru9I	TTAA	1 cut(s)	582
TscAI	CASTG	4 cut(s)	45, 360, 609, 690
TseFI	GTSAC	4 cut(s)	34, 100, 271, 458
TseI	GCWGC	3 cut(s)	134, 265, 392
Tsp45I	GTSAC	4 cut(s)	34, 100, 271, 458
TspDTI	ATGAA	4 cut(s)	441, 646, 722, 744
TspGWI	ACGGA	4 cut(s)	329, 445, 657, 661
TspRI	CASTG	4 cut(s)	45, 360, 609, 690
XapI	RAATTY	2 cut(s)	653, 712
XceI	RCATGY	1 cut(s)	724
XcmI	CCANNNNNNNNNTGG	1 cut(s)	82
XspI	CTAG	1 cut(s)	173

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.