Rorug04G0334100

Sulfate transporter

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0005511
Physical Location & Seq
Reverse (-)
50852337 .. 50853969
1633 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0334100.1

Sequence Viewer

Length: 933 bp
ATGAGCAATGCCTACTGCACTGGATTCTTCTGCAGCTTTCATCATAAAGCAGTGGAAATGCTGTCTTTGAGAAAGATGTGTGGAAAAATATTTTTTAGGGCCTTTTCAACATGCGCCTCACCGATGATCTCTACGAATTTTGCTCTGGTGATGCGTTCCCCATCATCACTTGCGTTGGCTACCCGGGGTGCACTATCTGATGCTCCCCAGCGTTCAGAGGAGTGGTTTGCCTTGCGGCGAAACAAACTGACTACAAGCACCTTCAGCACTGCCTTGGGATTTTGGAAAGGAAACCGTCGACCTGAGCTCTGGCATGAGAAGGTATTTGATTCACAGAAAGAATTCGCGCAAGCTTCTAAAAATGCCATGCAATGGGGTGTGCTCAATGAAGAGGTGGCCATAGAGCGGTATAAAAGCATCACAGGTCGTGAAGTGGGTACATATGGATTTGCATCCCACGGAGAGGAGCGGTTTGATTGGCTTGGTGCCTCCCCTGATGGTCTGCTTGATTGCTTTCAAGGTGGTGGTATCCTGGAAGTGAAGTGTCCTTTTAACAAGGGAAAACCGGAGCAGGGTCTGCCCTGGTCAACGATGCCTTTCTATTACATGCCTCAGGTGCAGGGTCAAATGGAGATAATGGATAGAGAGTGGGCTGATTTATATTGCTGGACACCAAATGGAAGCACAATATTCCGCGTGTGCCGAGACCGTAGTTATTGGGACTTGATGCATGGAATTTTAAGGGAATTTTGGTGGGAAAATGTGATTCCTGCTAAGGAGGCTCTTTTGCTGGGTAATGAAGAAAAGGCCAGGGAGTATATGCCAACTTCTACTCACAAAAAAACCGGCCTTGCAATCGTTAAGAGCTTGGAGTTAGCAAGAGGATCAAAGTTGCTGTGCAGGGAGATTGCTGGCCACATCGAGTTTTACTAG

Protein Analysis

310

Amino Acids

35.48

Weight (kDa)

8.51

Isoelectric Point (pI)

54.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqaJ PF09588 74 - 213 2.5e-23 YqaJ-like viral recombinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 485
AccB7I CCANNNNNTGG 1 cut(s) 372
AccBSI CCGCTC 2 cut(s) 406, 469
AccI GTMKAC 1 cut(s) 298
AccII CGCG 2 cut(s) 347, 696
AciI CCGC 4 cut(s) 235, 406, 469, 694
AclWI GGATC 1 cut(s) 892
AcoI YGGCCR 2 cut(s) 396, 913
AcsI RAATTY 4 cut(s) 136, 341, 735, 746
AcuI CTGAAG 1 cut(s) 247
AfaI GTAC 1 cut(s) 439
AfiI CCNNNNNNNGG 4 cut(s) 372, 405, 463, 572
AgsI TTSAA 2 cut(s) 108, 518
AjnI CCWGG 3 cut(s) 531, 581, 809
AluBI AGCT 4 cut(s) 36, 307, 353, 867
AluI AGCT 4 cut(s) 36, 307, 353, 867
Alw21I GWGCWC 3 cut(s) 193, 309, 384
Alw26I GTCTC 1 cut(s) 699
Alw44I GTGCAC 1 cut(s) 189
AlwI GGATC 1 cut(s) 892
AlwNI CAGNNNCTG 1 cut(s) 577
Ama87I CYCGRG 1 cut(s) 183
AoxI GGCC 5 cut(s) 99, 396, 807, 847, 913
ApaLI GTGCAC 1 cut(s) 189
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 4 cut(s) 136, 341, 735, 746
Asp700I GAANNNNTTC 1 cut(s) 341
AspLEI GCGC 2 cut(s) 116, 349
AspS9I GGNCC 1 cut(s) 99
AsuC2I CCSGG 2 cut(s) 184, 185
AsuHPI GGTGA 2 cut(s) 111, 160
AvaI CYCGRG 1 cut(s) 183
AxyI CCTNAGG 1 cut(s) 612
BaeGI GKGCMC 1 cut(s) 193
BalI TGGCCA 2 cut(s) 398, 915
BanI GGYRCC 1 cut(s) 485
BanII GRGCYC 1 cut(s) 309
Bbv12I GWGCWC 3 cut(s) 193, 309, 384
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 169, 491
BciT130I CCWGG 3 cut(s) 533, 583, 811
BciVI GTATCC 1 cut(s) 539
BcnI CCSGG 2 cut(s) 184, 185
BcoDI GTCTC 1 cut(s) 699
BfaI CTAG 1 cut(s) 931
BfmI CTRYAG 1 cut(s) 31
BfuI GTATCC 1 cut(s) 539
BisI GCNGC 2 cut(s) 34, 236
BlsI GCNGC 2 cut(s) 35, 237
Bme1390I CCNGG 5 cut(s) 184, 185, 533, 583, 811
BmeT110I CYCGRG 1 cut(s) 183
BmgT120I GGNCC 1 cut(s) 99
BmiI GGNNCC 1 cut(s) 487
BmrFI CCNGG 5 cut(s) 184, 185, 533, 583, 811
BmsI GCATC 6 cut(s) 141, 190, 426, 461, 582, 717
Bpu10I CCTNAGC 2 cut(s) 303, 774
BpuMI CCSGG 2 cut(s) 184, 185
BsaBI GATNNNNATC 1 cut(s) 451
BsaI GGTCTC 1 cut(s) 699
BsaJI CCNNGG 6 cut(s) 183, 184, 273, 457, 581, 810
BsaWI WCCGGW 1 cut(s) 565
Bsc4I CCNNNNNNNGG 4 cut(s) 372, 405, 463, 572
Bse118I RCCGGY 1 cut(s) 845
Bse1I ACTGG 1 cut(s) 25
Bse21I CCTNAGG 1 cut(s) 612
Bse3DI GCAATG 2 cut(s) 13, 377
Bse8I GATNNNNATC 1 cut(s) 451
BseBI CCWGG 3 cut(s) 533, 583, 811
BseDI CCNNGG 6 cut(s) 183, 184, 273, 457, 581, 810
BseGI GGATG 1 cut(s) 452
BseJI GATNNNNATC 1 cut(s) 451
BseLI CCNNNNNNNGG 4 cut(s) 372, 405, 463, 572
BseMI GCAATG 2 cut(s) 13, 377
BseMII CTCAG 2 cut(s) 294, 626
BseNI ACTGG 1 cut(s) 25
BseRI GAGGAG 2 cut(s) 233, 479
BseSI GKGCMC 1 cut(s) 193
BseXI GCAGC 1 cut(s) 45
BseYI CCCAGC 2 cut(s) 207, 790
BsgI GTGCAG 2 cut(s) 638, 919
Bsh1236I CGCG 2 cut(s) 347, 696
BshFI GGCC 5 cut(s) 101, 398, 809, 849, 915
BshNI GGYRCC 1 cut(s) 485
BsiHKAI GWGCWC 3 cut(s) 193, 309, 384
BsiHKCI CYCGRG 1 cut(s) 183
BsiSI CCGG 3 cut(s) 184, 566, 846
BslFI GGGAC 1 cut(s) 734
BslI CCNNNNNNNGG 4 cut(s) 372, 405, 463, 572
BsmAI GTCTC 1 cut(s) 699
BsmFI GGGAC 1 cut(s) 734
BsnI GGCC 5 cut(s) 101, 398, 809, 849, 915
Bso31I GGTCTC 1 cut(s) 699
BsoBI CYCGRG 1 cut(s) 183
Bsp1286I GDGCHC 3 cut(s) 193, 309, 384
Bsp143I GATC 2 cut(s) 126, 884
BspACI CCGC 4 cut(s) 235, 406, 469, 694
BspANI GGCC 5 cut(s) 101, 398, 809, 849, 915
BspCNI CTCAG 2 cut(s) 295, 625
BspFNI CGCG 2 cut(s) 347, 696
BspLI GGNNCC 1 cut(s) 487
BspMAI CTGCAG 1 cut(s) 35
BspPI GGATC 1 cut(s) 892
BspT107I GGYRCC 1 cut(s) 485
BspTNI GGTCTC 1 cut(s) 699
BsrBI CCGCTC 2 cut(s) 406, 469
BsrDI GCAATG 2 cut(s) 13, 377
BsrFI RCCGGY 1 cut(s) 845
BsrI ACTGG 1 cut(s) 25
BssAI RCCGGY 1 cut(s) 845
BssECI CCNNGG 6 cut(s) 183, 184, 273, 457, 581, 810
BssMI GATC 2 cut(s) 126, 884
BssT1I CCWWGG 1 cut(s) 273
Bst2UI CCWGG 3 cut(s) 533, 583, 811
Bst4CI ACNGT 2 cut(s) 296, 710
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 1 cut(s) 577
BstC8I GCNNGC 2 cut(s) 351, 913
BstDEI CTNAG 3 cut(s) 303, 612, 774
BstDSI CCRYGG 1 cut(s) 457
BstF5I GGATG 1 cut(s) 452
BstFNI CGCG 2 cut(s) 347, 696
BstHHI GCGC 2 cut(s) 116, 349
BstKTI GATC 2 cut(s) 129, 887
BstMAI GTCTC 1 cut(s) 699
BstMBI GATC 2 cut(s) 126, 884
BstMWI GCNNNNNNNGC 4 cut(s) 264, 577, 616, 779
BstNI CCWGG 3 cut(s) 533, 583, 811
BstNSI RCATGY 2 cut(s) 114, 610
BstSCI CCNGG 5 cut(s) 182, 183, 531, 581, 809
BstSFI CTRYAG 1 cut(s) 31
BstSLI GKGCMC 1 cut(s) 193
BstUI CGCG 2 cut(s) 347, 696
BstV1I GCAGC 1 cut(s) 45
Bsu36I CCTNAGG 1 cut(s) 612
BsuI GTATCC 1 cut(s) 539
BsuRI GGCC 5 cut(s) 101, 398, 809, 849, 915
BtgI CCRYGG 1 cut(s) 457
BtsCI GGATG 1 cut(s) 452
BtsI GCAGTG 2 cut(s) 57, 267
BtsIMutI CAGTG 3 cut(s) 18, 57, 267
Cac8I GCNNGC 2 cut(s) 351, 913
CaiI CAGNNNCTG 1 cut(s) 577
CfoI GCGC 2 cut(s) 116, 349
Cfr10I RCCGGY 1 cut(s) 845
Cfr13I GGNCC 1 cut(s) 99
Cfr9I CCCGGG 1 cut(s) 183
Csp6I GTAC 1 cut(s) 438
CviAII CATG 5 cut(s) 111, 314, 367, 607, 731
CviQI GTAC 1 cut(s) 438
DdeI CTNAG 3 cut(s) 303, 612, 774
DpnI GATC 2 cut(s) 128, 886
DpnII GATC 2 cut(s) 126, 884
EaeI YGGCCR 2 cut(s) 396, 913
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 307
Eco130I CCWWGG 1 cut(s) 273
Eco24I GRGCYC 1 cut(s) 309
Eco31I GGTCTC 1 cut(s) 699
Eco53kI GAGCTC 1 cut(s) 307
Eco57I CTGAAG 1 cut(s) 247
Eco81I CCTNAGG 1 cut(s) 612
Eco88I CYCGRG 1 cut(s) 183
EcoICRI GAGCTC 1 cut(s) 307
EcoO109I RGGNCCY 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 341
EcoRII CCWGG 3 cut(s) 531, 581, 809
EcoT14I CCWWGG 1 cut(s) 273
EcoT22I ATGCAT 1 cut(s) 732
EcoT38I GRGCYC 1 cut(s) 309
ErhI CCWWGG 1 cut(s) 273
FaeI CATG 5 cut(s) 114, 317, 370, 610, 734
FaqI GGGAC 1 cut(s) 734
FatI CATG 5 cut(s) 110, 313, 366, 606, 730
FauNDI CATATG 1 cut(s) 442
FblI GTMKAC 1 cut(s) 298
Fnu4HI GCNGC 2 cut(s) 34, 236
FokI GGATG 1 cut(s) 439
FriOI GRGCYC 1 cut(s) 309
Fsp4HI GCNGC 2 cut(s) 34, 236
FspBI CTAG 1 cut(s) 931
GlaI GCGC 2 cut(s) 115, 348
GluI GCNGC 2 cut(s) 34, 236
GsaI CCCAGC 2 cut(s) 211, 794
HaeIII GGCC 5 cut(s) 101, 398, 809, 849, 915
HapII CCGG 3 cut(s) 184, 566, 846
HhaI GCGC 2 cut(s) 116, 349
Hin1II CATG 5 cut(s) 114, 317, 370, 610, 734
Hin6I GCGC 2 cut(s) 114, 347
HinP1I GCGC 2 cut(s) 114, 347
HincII GTYRAC 2 cut(s) 299, 588
HindII GTYRAC 2 cut(s) 299, 588
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 3 cut(s) 24, 329, 766
HpaII CCGG 3 cut(s) 184, 566, 846
HphI GGTGA 2 cut(s) 111, 160
Hpy166II GTNNAC 3 cut(s) 191, 299, 588
Hpy188I TCNGA 2 cut(s) 199, 217
Hpy188III TCNNGA 1 cut(s) 428
Hpy8I GTNNAC 3 cut(s) 191, 299, 588
Hpy99I CGWCG 1 cut(s) 300
HpyAV CCTTC 2 cut(s) 271, 313
HpyCH4III ACNGT 2 cut(s) 296, 710
HpyCH4V TGCA 9 cut(s) 18, 33, 191, 370, 452, 619, 730, 854, 900
HpyF10VI GCNNNNNNNGC 4 cut(s) 264, 577, 616, 779
HpyF3I CTNAG 3 cut(s) 303, 612, 774
Hsp92II CATG 5 cut(s) 114, 317, 370, 610, 734
HspAI GCGC 2 cut(s) 114, 347
Kzo9I GATC 2 cut(s) 126, 884
LmnI GCTCC 3 cut(s) 208, 466, 568
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 6 cut(s) 141, 190, 426, 461, 582, 717
MaeI CTAG 1 cut(s) 931
MalI GATC 2 cut(s) 128, 886
MbiI CCGCTC 2 cut(s) 406, 469
MboI GATC 2 cut(s) 126, 884
MboII GAAGA 3 cut(s) 19, 401, 812
MhlI GDGCHC 3 cut(s) 193, 309, 384
MlsI TGGCCA 2 cut(s) 398, 915
MluCI AATT 4 cut(s) 136, 341, 735, 746
MluNI TGGCCA 2 cut(s) 398, 915
MnlI CCTC 8 cut(s) 127, 211, 385, 457, 499, 621, 772, 875
Mox20I TGGCCA 2 cut(s) 398, 915
Mph1103I ATGCAT 1 cut(s) 732
MroXI GAANNNNTTC 1 cut(s) 341
MscI TGGCCA 2 cut(s) 398, 915
MseI TTAA 3 cut(s) 552, 740, 861
Msp20I TGGCCA 2 cut(s) 398, 915
MspI CCGG 3 cut(s) 184, 566, 846
MspR9I CCNGG 5 cut(s) 184, 185, 533, 583, 811
MvaI CCWGG 3 cut(s) 533, 583, 811
MvnI CGCG 2 cut(s) 347, 696
MwoI GCNNNNNNNGC 4 cut(s) 264, 577, 616, 779
NciI CCSGG 2 cut(s) 184, 185
NdeI CATATG 1 cut(s) 442
NdeII GATC 2 cut(s) 126, 884
NlaIII CATG 5 cut(s) 114, 317, 370, 610, 734
NlaIV GGNNCC 1 cut(s) 487
NmeAIII GCCGAG 1 cut(s) 728
NsiI ATGCAT 1 cut(s) 732
NspI RCATGY 2 cut(s) 114, 610
PdmI GAANNNNTTC 1 cut(s) 341
PfeI GAWTC 3 cut(s) 24, 329, 766
PflMI CCANNNNNTGG 1 cut(s) 372
PfoI TCCNGGA 1 cut(s) 531
PkrI GCNGC 2 cut(s) 35, 237
Psp124BI GAGCTC 1 cut(s) 309
Psp6I CCWGG 3 cut(s) 531, 581, 809
PspFI CCCAGC 2 cut(s) 207, 790
PspGI CCWGG 3 cut(s) 531, 581, 809
PspN4I GGNNCC 1 cut(s) 487
PspPI GGNCC 1 cut(s) 99
PstI CTGCAG 1 cut(s) 35
PstNI CAGNNNCTG 1 cut(s) 577
RsaI GTAC 1 cut(s) 439
RsaNI GTAC 1 cut(s) 438
SacI GAGCTC 1 cut(s) 309
SalI GTCGAC 1 cut(s) 297
SaqAI TTAA 3 cut(s) 552, 740, 861
SatI GCNGC 2 cut(s) 34, 236
Sau3AI GATC 2 cut(s) 126, 884
Sau96I GGNCC 1 cut(s) 99
ScrFI CCNGG 5 cut(s) 184, 185, 533, 583, 811
SduI GDGCHC 3 cut(s) 193, 309, 384
SfaNI GCATC 6 cut(s) 141, 190, 426, 461, 582, 717
SfcI CTRYAG 1 cut(s) 31
SmaI CCCGGG 1 cut(s) 185
Sse9I AATT 4 cut(s) 136, 341, 735, 746
SsiI CCGC 4 cut(s) 235, 406, 469, 694
SspI AATATT 2 cut(s) 90, 690
SspMI CTAG 1 cut(s) 931
SstI GAGCTC 1 cut(s) 309
StyD4I CCNGG 5 cut(s) 182, 183, 531, 581, 809
StyI CCWWGG 1 cut(s) 273
TaaI ACNGT 2 cut(s) 296, 710
TaqI TCGA 2 cut(s) 298, 921
TasI AATT 4 cut(s) 136, 341, 735, 746
TauI GCSGC 1 cut(s) 238
TfiI GAWTC 3 cut(s) 24, 329, 766
Tru1I TTAA 3 cut(s) 552, 740, 861
Tru9I TTAA 3 cut(s) 552, 740, 861
TscAI CASTG 3 cut(s) 25, 57, 274
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 3 cut(s) 29, 402, 813
TspGWI ACGGA 1 cut(s) 474
TspMI CCCGGG 1 cut(s) 183
TspRI CASTG 3 cut(s) 25, 57, 274
Van91I CCANNNNNTGG 1 cut(s) 372
VneI GTGCAC 1 cut(s) 189
XapI RAATTY 4 cut(s) 136, 341, 735, 746
XceI RCATGY 2 cut(s) 114, 610
XmaI CCCGGG 1 cut(s) 183
XmiI GTMKAC 1 cut(s) 298
XmnI GAANNNNTTC 1 cut(s) 341
XspI CTAG 1 cut(s) 931
Zsp2I ATGCAT 1 cut(s) 732
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.