Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0005789

Physical Location & Seq

Genomic Coordinates Forward (+)

5868943 .. 5871774

Gene Structure 2832 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1125 bp

ATGAATACTTGTATGAAGCTTTTGGCTAATGAGGTATTCGAAAAGGAGACTGGAGGATATGATAGTGATTCGGAAGAGGATGGACCTGACCATTTGGAGGATTTATTTCCCGTTGAGAATCCACCTGACAACAGTTCAAACAGACGGTCCAAGAAAAGGAAGCTTTCAGATAAACCTCAGAGTTCAAAGAGGAAGAGAATTAAATCTTCTGCTACCGAAGAATGTTCAGGTTTACCTGAAGGCCTTCAGAATGATGTCTGTGCAGAGAAGAAAAAAAGTTCTCATCAGTCTCGTGTTCTCGCCAGAAAGAGACATTCCAAGATGGACAAGTCATTTATTGTTGAGGATGGACTGGATAATTCAAGCACCCGTAAAACTGATGAAAGAATTGATGGAATAAGTAAATCAGTGCCCAATGGAAAGAGATCCTGTCAGCTTCAAGAGAATGATAAAAAGGGTGTGGTTTCATCTGAAACGCCTGGTGAAAGTAAAAAGCTTCCTAGTAGAAGTGCTCGACGTAAAAAGGCCAAAAGGCAATGGTTGAGGGAAAAAAATGAAATGCTCAAAACAAATAATCAGCAATCTACGGGTAAAGATAATCAGAAATGTCCTGAAGAACACCAACAACCAAACACAAACAATGAAGAAGAGGAGGAACAATCGGACACAGATAGTGGCGGAGAGGATGAGCAAATGAAAATAGATAACAATGAAGTAGTTGAGCAACCATACACAGATAATGATAAAGAGGATGATATTGTTCCTGTAGTAATTAGACCAGGACATATTCGATTTGAACCCCTAGGAAAAGTGGACGAAGATCAGCCTATTCAGCAGAAAAGAACTCCAGTGGAAATTTTTCGGTGGAATGGAATAACCAGCAAGAGGGGTCAAAAATGGGGTATGGAGAAAACATCACATTCAAGAGCAAGCGACTACAACGATCTGAATCAAGAGTCACCTGCAGTACCGGATATTGAAAAAGAGATTCCGGTGAATGATCACATAGACTTCAATAGGCTTGAGCTTTGTACTACTCTACCTAAGGAAGGTGATCAAATTGCATATCGTTTGATTGAATTAACATCGTGCTGGACTCCTGAAGTTTCCTCATACCGAGTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0017069 GO:0030619 GO:0030620 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coilin_N

Protein Analysis

375

Amino Acids

42.73

Weight (kDa)

5.55

Isoelectric Point (pI)

70.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Tudor_Coilin	PF23086	334 - 374	2.6e-16	Coilin, C-terminal Tudor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13030
fragaria_vesca	FvH4_4g25440 FvH4_4g25440 FvH4_4g25440 FvH4_4g25440 FvH4_4g25440
malus_domestica	MD13G1102900.v1.1 MD16G1103100.v1.1
prunus_persica	Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1
pyrus_communis	pycom13g09000 pycom16g08780
rosa_chinensis	RchiOBHm_Chr4g0432751
rosa_laevigata	RLG00000006815
rosa_multiflora	Rmu_sc0012180.1_g000008
rosa_roxburghii	Rroxscaffold_5G00374210
rosa_rugosa	Rorug04G0262200 Rorug04G0262200
rosa_samantha	Rh4AG316700 Rh4BG324800 Rh4CG339800 Rh4DG320000
rosa_wichuraiana	Rw4G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	970
Acc36I	ACCTGC	1 cut(s)	970
AciI	CCGC	1 cut(s)	678
AclWI	GGATC	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	855
AcuI	CTGAAG	4 cut(s)	230, 258, 633, 1122
AfaI	GTAC	2 cut(s)	969, 1033
AfiI	CCNNNNNNNGG	4 cut(s)	97, 156, 885, 1049
AgsI	TTSAA	9 cut(s)	138, 186, 363, 440, 797, 924, 980, 1015, 1079
AjnI	CCWGG	2 cut(s)	478, 778
AluBI	AGCT	5 cut(s)	19, 163, 436, 496, 1027
AluI	AGCT	5 cut(s)	19, 163, 436, 496, 1027
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	3 cut(s)	41, 294, 304
AlwI	GGATC	1 cut(s)	420
AoxI	GGCC	2 cut(s)	241, 525
ApoI	RAATTY	1 cut(s)	855
ArsI	GACNNNNNNTTYG	2 cut(s)	131, 163
Asp700I	GAANNNNTTC	2 cut(s)	243, 858
AspA2I	CCTAGG	1 cut(s)	802
AspS9I	GGNCC	2 cut(s)	83, 147
AsuHPI	GGTGA	4 cut(s)	494, 951, 1006, 1064
AsuII	TTCGAA	1 cut(s)	39
AvaII	GGWCC	2 cut(s)	83, 147
AvrII	CCTAGG	1 cut(s)	802
AxyI	CCTNAGG	1 cut(s)	1044
BaeGI	GKGCMC	1 cut(s)	414
BauI	CACGAG	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	514
BccI	CCATC	4 cut(s)	74, 316, 341, 386
BciT130I	CCWGG	2 cut(s)	480, 780
BclI	TGATCA	2 cut(s)	1000, 1054
BcoDI	GTCTC	3 cut(s)	41, 294, 304
BfaI	CTAG	2 cut(s)	501, 803
BfmI	CTRYAG	2 cut(s)	765, 963
BfuAI	ACCTGC	1 cut(s)	970
BlnI	CCTAGG	1 cut(s)	802
Bme1390I	CCNGG	2 cut(s)	480, 780
Bme18I	GGWCC	2 cut(s)	83, 147
BmgT120I	GGNCC	2 cut(s)	83, 147
BmrFI	CCNGG	2 cut(s)	480, 780
BpmI	CTGGAG	2 cut(s)	72, 831
Bpu14I	TTCGAA	1 cut(s)	39
BpuEI	CTTGAG	1 cut(s)	1043
BsaBI	GATNNNNATC	1 cut(s)	948
BsaJI	CCNNGG	1 cut(s)	802
BsaWI	WCCGGW	2 cut(s)	970, 991
Bsc4I	CCNNNNNNNGG	4 cut(s)	97, 156, 885, 1049
Bse1I	ACTGG	3 cut(s)	55, 357, 848
Bse21I	CCTNAGG	1 cut(s)	1044
Bse3DI	GCAATG	1 cut(s)	542
Bse8I	GATNNNNATC	1 cut(s)	948
BseBI	CCWGG	2 cut(s)	480, 780
BseDI	CCNNGG	1 cut(s)	802
BseGI	GGATG	4 cut(s)	85, 352, 691, 757
BseJI	GATNNNNATC	1 cut(s)	948
BseLI	CCNNNNNNNGG	4 cut(s)	97, 156, 885, 1049
BseMI	GCAATG	1 cut(s)	542
BseMII	CTCAG	1 cut(s)	191
BseNI	ACTGG	3 cut(s)	55, 357, 848
BseRI	GAGGAG	1 cut(s)	665
BseSI	GKGCMC	1 cut(s)	414
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	2 cut(s)	243, 527
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	971, 992
BslI	CCNNNNNNNGG	4 cut(s)	97, 156, 885, 1049
BsmAI	GTCTC	3 cut(s)	41, 294, 304
BsnI	GGCC	2 cut(s)	243, 527
Bsp119I	TTCGAA	1 cut(s)	39
Bsp1286I	GDGCHC	2 cut(s)	414, 514
Bsp143I	GATC	5 cut(s)	425, 820, 943, 1000, 1054
BspACI	CCGC	1 cut(s)	678
BspANI	GGCC	2 cut(s)	243, 527
BspCNI	CTCAG	1 cut(s)	190
BspMAI	CTGCAG	1 cut(s)	967
BspMI	ACCTGC	1 cut(s)	970
BspPI	GGATC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	39
BsrDI	GCAATG	1 cut(s)	542
BsrI	ACTGG	3 cut(s)	55, 357, 848
BssECI	CCNNGG	1 cut(s)	802
BssMI	GATC	5 cut(s)	425, 820, 943, 1000, 1054
BssSI	CACGAG	1 cut(s)	291
BssT1I	CCWWGG	1 cut(s)	802
Bst2BI	CACGAG	1 cut(s)	291
Bst2UI	CCWGG	2 cut(s)	480, 780
Bst4CI	ACNGT	2 cut(s)	134, 147
Bst6I	CTCTTC	3 cut(s)	69, 188, 642
BstBI	TTCGAA	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	931
BstDEI	CTNAG	2 cut(s)	177, 1044
BstENI	CCTNNNNNAGG	1 cut(s)	1047
BstF5I	GGATG	4 cut(s)	85, 352, 691, 757
BstKTI	GATC	5 cut(s)	428, 823, 946, 1003, 1057
BstMAI	GTCTC	3 cut(s)	41, 294, 304
BstMBI	GATC	5 cut(s)	425, 820, 943, 1000, 1054
BstMWI	GCNNNNNNNGC	1 cut(s)	832
BstNI	CCWGG	2 cut(s)	480, 780
BstSCI	CCNGG	2 cut(s)	478, 778
BstSFI	CTRYAG	2 cut(s)	765, 963
BstSLI	GKGCMC	1 cut(s)	414
BstX2I	RGATCY	1 cut(s)	425
BstYI	RGATCY	1 cut(s)	425
Bsu36I	CCTNAGG	1 cut(s)	1044
BsuRI	GGCC	2 cut(s)	243, 527
BtsCI	GGATG	4 cut(s)	85, 352, 691, 757
BtsIMutI	CAGTG	2 cut(s)	414, 855
BveI	ACCTGC	1 cut(s)	970
Cac8I	GCNNGC	1 cut(s)	931
Cfr13I	GGNCC	2 cut(s)	83, 147
Csp6I	GTAC	2 cut(s)	968, 1032
CviQI	GTAC	2 cut(s)	968, 1032
DdeI	CTNAG	2 cut(s)	177, 1044
DpnI	GATC	5 cut(s)	427, 822, 945, 1002, 1056
DpnII	GATC	5 cut(s)	425, 820, 943, 1000, 1054
Eam1104I	CTCTTC	3 cut(s)	69, 188, 642
EarI	CTCTTC	3 cut(s)	69, 188, 642
EciI	GGCGGA	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	802
Eco147I	AGGCCT	1 cut(s)	243
Eco47I	GGWCC	2 cut(s)	83, 147
Eco57I	CTGAAG	4 cut(s)	230, 258, 633, 1122
Eco81I	CCTNAGG	1 cut(s)	1044
EcoNI	CCTNNNNNAGG	1 cut(s)	1047
EcoRII	CCWGG	2 cut(s)	478, 778
EcoT14I	CCWWGG	1 cut(s)	802
ErhI	CCWWGG	1 cut(s)	802
FaiI	YATR	9 cut(s)	14, 60, 730, 786, 905, 1007, 1066, 1114, 1123
FbaI	TGATCA	2 cut(s)	1000, 1054
FokI	GGATG	4 cut(s)	92, 359, 698, 764
FspBI	CTAG	2 cut(s)	501, 803
GsuI	CTGGAG	2 cut(s)	72, 831
HaeIII	GGCC	2 cut(s)	243, 527
HapII	CCGG	2 cut(s)	971, 992
HindIII	AAGCTT	3 cut(s)	17, 161, 494
HinfI	GANTC	6 cut(s)	68, 118, 949, 956, 988, 1096
HpaII	CCGG	2 cut(s)	971, 992
HphI	GGTGA	4 cut(s)	494, 951, 1006, 1064
Hpy166II	GTNNAC	2 cut(s)	233, 814
Hpy188I	TCNGA	8 cut(s)	73, 169, 180, 249, 472, 603, 664, 948
Hpy188III	TCNNGA	5 cut(s)	440, 611, 924, 953, 1100
Hpy8I	GTNNAC	2 cut(s)	233, 814
Hpy99I	CGWCG	1 cut(s)	519
HpyAV	CCTTC	3 cut(s)	233, 254, 1043
HpyCH4III	ACNGT	2 cut(s)	134, 147
HpyCH4IV	ACGT	1 cut(s)	517
HpyCH4V	TGCA	3 cut(s)	263, 965, 1064
HpyF10VI	GCNNNNNNNGC	1 cut(s)	832
HpyF3I	CTNAG	2 cut(s)	177, 1044
HpySE526I	ACGT	1 cut(s)	517
Ksp22I	TGATCA	2 cut(s)	1000, 1054
Kzo9I	GATC	5 cut(s)	425, 820, 943, 1000, 1054
MaeI	CTAG	2 cut(s)	501, 803
MaeII	ACGT	1 cut(s)	517
MaeIII	GTNAC	1 cut(s)	957
MalI	GATC	5 cut(s)	427, 822, 945, 1002, 1056
MboI	GATC	5 cut(s)	425, 820, 943, 1000, 1054
MboII	GAAGA	9 cut(s)	86, 198, 205, 230, 280, 626, 656, 659, 830
MflI	RGATCY	1 cut(s)	425
MhlI	GDGCHC	2 cut(s)	414, 514
MluCI	AATT	7 cut(s)	198, 358, 387, 771, 855, 1059, 1079
MlyI	GAGTC	2 cut(s)	965, 1090
MroXI	GAANNNNTTC	2 cut(s)	243, 858
MseI	TTAA	2 cut(s)	201, 1082
MspI	CCGG	2 cut(s)	971, 992
MspR9I	CCNGG	2 cut(s)	480, 780
MvaI	CCWGG	2 cut(s)	480, 780
MwoI	GCNNNNNNNGC	1 cut(s)	832
NdeII	GATC	5 cut(s)	425, 820, 943, 1000, 1054
NmuCI	GTSAC	1 cut(s)	957
NspV	TTCGAA	1 cut(s)	39
PaqCI	CACCTGC	1 cut(s)	970
PceI	AGGCCT	1 cut(s)	243
PdmI	GAANNNNTTC	2 cut(s)	243, 858
PfeI	GAWTC	4 cut(s)	68, 118, 949, 988
PleI	GAGTC	2 cut(s)	964, 1090
PpsI	GAGTC	2 cut(s)	964, 1090
Psp6I	CCWGG	2 cut(s)	478, 778
PspGI	CCWGG	2 cut(s)	478, 778
PspPI	GGNCC	2 cut(s)	83, 147
PstI	CTGCAG	1 cut(s)	967
PsuI	RGATCY	1 cut(s)	425
RsaI	GTAC	2 cut(s)	969, 1033
RsaNI	GTAC	2 cut(s)	968, 1032
SaqAI	TTAA	2 cut(s)	201, 1082
Sau3AI	GATC	5 cut(s)	425, 820, 943, 1000, 1054
Sau96I	GGNCC	2 cut(s)	83, 147
SchI	GAGTC	2 cut(s)	965, 1090
ScrFI	CCNGG	2 cut(s)	480, 780
SduI	GDGCHC	2 cut(s)	414, 514
SfcI	CTRYAG	2 cut(s)	765, 963
SfuI	TTCGAA	1 cut(s)	39
SinI	GGWCC	2 cut(s)	83, 147
SmlI	CTYRAG	1 cut(s)	1022
SmoI	CTYRAG	1 cut(s)	1022
Sse9I	AATT	7 cut(s)	198, 358, 387, 771, 855, 1059, 1079
SseBI	AGGCCT	1 cut(s)	243
SsiI	CCGC	1 cut(s)	678
SspMI	CTAG	2 cut(s)	501, 803
StuI	AGGCCT	1 cut(s)	243
StyD4I	CCNGG	2 cut(s)	478, 778
StyI	CCWWGG	1 cut(s)	802
TaaI	ACNGT	2 cut(s)	134, 147
TaiI	ACGT	1 cut(s)	520
TaqI	TCGA	3 cut(s)	39, 514, 790
TasI	AATT	7 cut(s)	198, 358, 387, 771, 855, 1059, 1079
TatI	WGTACW	1 cut(s)	1031
TfiI	GAWTC	4 cut(s)	68, 118, 949, 988
Tru1I	TTAA	2 cut(s)	201, 1082
Tru9I	TTAA	2 cut(s)	201, 1082
TscAI	CASTG	2 cut(s)	414, 855
TseFI	GTSAC	1 cut(s)	957
Tsp45I	GTSAC	1 cut(s)	957
TspDTI	ATGAA	8 cut(s)	17, 29, 396, 456, 570, 657, 710, 726
TspRI	CASTG	2 cut(s)	414, 855
VpaK11BI	GGWCC	2 cut(s)	83, 147
XagI	CCTNNNNNAGG	1 cut(s)	1047
XapI	RAATTY	1 cut(s)	855
XmaJI	CCTAGG	1 cut(s)	802
XmnI	GAANNNNTTC	2 cut(s)	243, 858
XspI	CTAG	2 cut(s)	501, 803

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.