Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0005789

Physical Location & Seq

Genomic Coordinates Reverse (-)

59955249 .. 59961722

Gene Structure 6474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG339800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2082 bp

ATGACGGAGACTGTGAGGCTGCGCGTGGAATTCAAGGACCGGCACACTCTGAGCAAGTCACAGAGGACCGACGGACTCCGGCGGAGCTGGATTCTCCTGAAACCTCAACACCGCACCATCTCCGACCTCGCCGCCTATCTCCTCCACGTCTTCGACCTCCACGATTCTTGCCCCGATGGCCTCCTCATCTCCATGGATGAGTTTGTGTTGCCGGCGTTTGAGTCCACCTGCATTTTCAAGGATAGAGATATTGTCAGTGTGAAAAGGAAAGGTGTGTCTGAAATTGACATGATTGAGGATGGAAGAAACTGTATTGAGGTTGAAGAAATCGTGGAGAGGCAACTTGCGGATGGAGGTATGAAGCTTCTGGCTAATGAGGAGTTCGAGAAGGAGAAGGGAGGGTATGAAAGTGAGCTAGAAGAGGATGAACCTGACCAGTTGGAAGATATATTTCCGGTTAAAAATGCACCGGACAACGATACAAGCACACTTTCCAAGAAAAGGAAGCGATCAAATAAACCTGAGAGCTCCAAGAAGAAGAGAAGTAAATCTGCTACTACTGGAGGATGTTCAGTTGTCCCAGAAGATGTTCAAGGTGATGTCCAAGAGGACAAGAACAGAAGCTCTCATAAGCGTCGTGTCAGAAAGAGTCTTTCCAAGAAGGAAAAGTCAACTACTGGAGAGGGTGAGCTGGATGATTCAAGCACCTCTGAAACTGATAAAAGGACCAACAACATAAGTCATTCTACACCCAGTGCAAACAGGCACAGTCAGCTTCAAGAGAATGGCATAAACGGTGTTGTTTCATCTGACAAGCCTGATGAAAGTAAAAAGTTGCCTAGTAGAAGTGCTCGACGTAAAAAGGCCAAAAGAATATGGAAGAGGGAAAACATGAAAGCTCAGAAGGAAGAGTGTTCCATTTTGCAGTTACATCAGACACAGGTAGGCAAACCGGTTAATCAGCAATCATCTGACAAAGATAATCAGAAATCATCAAACAAAGCTGATCAACAATCATCTGACAAAGCTAATCAGCAATTTTCTGACAAAGATAATCAGAAAAGCTCTGAAGAAGATGAACCAAATACAGATAATGATGAAGAAGACAACGTTGTTCCTGTAGTAACTAGGCCAGGACACATTCGCTTTGCACCCCTCGGTAAAGTGGAAGCAGATCAGAGTTTCCAGCAGAATGAAATTCCAGTGAAAACTTTTCAGTGGAATGGAATAACCAGCAAGAAGAAGGGTCAAAAATGGGGTATGGAGAAAACATCATATTCAAATAAGAGCAACTATGAAGATCTGTACCAAGAGTCATCTGAAATGCCTGGTATTGAAGAAGAGATTCCTGAAAATGATTCCATAGACTTTAATAAGCTTGAGCTCTCTACCAGTGTACCGAAGGAAGGTGATCTAATTGCATATCGGTTGATTGAATTATCATTATGCTGGACCCCTGAAGTTTCTTCCTATCGAGTTGGAAAAGTGTCACAGTACAACCCTCAATCAAATAAGATTGTGCTAGTACAGGTTCCAGAATATCCCATTGTTTTTGAGGAGACAGATGAGGCATCTGAGGTACAACCAGATACATCCCTTTATGGGGGAGATGGTTCTTTAGAGATAGATTATTCTTCTCTTATCGATGTCCGCATTGTCAAGTATGGGAACCTGAACACAGCCAAAGCAGTCACTGGAGATCAAAATGATGTATCCAGTTTTAGGCTCAAGAATGGCACGGAAACTAGGGCTCTATCAGGTTTCAGGCTCAAGAATGACAAAGAAACTCAGGCTGCTGCATTAGGCTTCAGGCTTAGGAATGACAAGGGAACTCAGGCTGCTGCATCAGGTTTCAGTATTAAGAATGACAAGGAAACTCGTGCTAGTGCACAAGAAAATGGAAAAGCAGGTGCATGGGATGAAATCAGCCAGGCATTGAATGCGAAGAAAGCGGAGCTTTCTCAGGAAGATGGCTGGGGTAAAAATGATGGTTCAGGAAGGAGCTCGTGGACATCTAGGCCCTGGAGGGGTAGCGCATTGGGTCCAACAATGGCTCTTTTAAGAGCGCAAAGTGAGCTATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0017069 GO:0030619 GO:0030620 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coilin_N

Protein Analysis

693

Amino Acids

77.68

Weight (kDa)

5.55

Isoelectric Point (pI)

52.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coilin_N	PF15862	5 - 181	5.8e-11	Coilin N-terminus
Tudor_Coilin	PF23086	454 - 555	9.1e-45	Coilin, C-terminal Tudor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13030
fragaria_vesca	FvH4_4g25440 FvH4_4g25440 FvH4_4g25440 FvH4_4g25440 FvH4_4g25440
malus_domestica	MD13G1102900.v1.1 MD16G1103100.v1.1
prunus_persica	Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1
pyrus_communis	pycom13g09000 pycom16g08780
rosa_chinensis	RchiOBHm_Chr4g0432751
rosa_laevigata	RLG00000006815
rosa_multiflora	Rmu_sc0012180.1_g000008
rosa_roxburghii	Rroxscaffold_5G00374210
rosa_rugosa	Rorug04G0262200 Rorug04G0262200
rosa_samantha	Rh4AG316700 Rh4BG324800 Rh4CG339800 Rh4DG320000
rosa_wichuraiana	Rw4G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	236, 1898
Acc36I	ACCTGC	2 cut(s)	236, 1898
AccII	CGCG	1 cut(s)	24
AciI	CCGC	6 cut(s)	82, 112, 132, 347, 1651, 1952
AclI	AACGTT	1 cut(s)	1110
AcsI	RAATTY	2 cut(s)	29, 1197
AcuI	CTGAAG	3 cut(s)	1089, 1479, 1792
AdeI	CACNNNGTG	1 cut(s)	755
AfaI	GTAC	5 cut(s)	1307, 1398, 1496, 1527, 1581
AfiI	CCNNNNNNNGG	6 cut(s)	501, 1406, 1602, 1603, 1722, 2027
AgeI	ACCGGT	1 cut(s)	952
AjiI	CACGTC	1 cut(s)	148
AjnI	CCWGG	4 cut(s)	1132, 1327, 1929, 2021
Alw21I	GWGCWC	5 cut(s)	530, 853, 1386, 1891, 2006
Alw26I	GTCTC	2 cut(s)	2, 1553
Alw44I	GTGCAC	1 cut(s)	1887
AlwNI	CAGNNNCTG	1 cut(s)	1694
AoxI	GGCC	4 cut(s)	178, 864, 1130, 2018
ApaLI	GTGCAC	1 cut(s)	1887
ApeKI	GCWGC	5 cut(s)	19, 1793, 1796, 1838, 1841
ApoI	RAATTY	2 cut(s)	29, 1197
AsiGI	ACCGGT	1 cut(s)	952
Asp700I	GAANNNNTTC	2 cut(s)	588, 1344
AspLEI	GCGC	3 cut(s)	24, 2036, 2068
AspS9I	GGNCC	6 cut(s)	37, 66, 726, 1452, 2019, 2042
AsuHPI	GGTGA	3 cut(s)	608, 698, 1421
AvaII	GGWCC	5 cut(s)	37, 66, 726, 1452, 2042
BaeGI	GKGCMC	1 cut(s)	1891
BaeI	ACNNNNGTAYC	2 cut(s)	1380, 1413
BanII	GRGCYC	4 cut(s)	530, 1386, 1753, 2006
BauI	CACGAG	2 cut(s)	1878, 2005
BbsI	GAAGAC	2 cut(s)	142, 1110
Bbv12I	GWGCWC	5 cut(s)	530, 853, 1386, 1891, 2006
BbvI	GCAGC	5 cut(s)	6, 1780, 1783, 1825, 1828
BccI	CCATC	7 cut(s)	125, 170, 293, 344, 1604, 1964, 1982
BciT130I	CCWGG	4 cut(s)	1134, 1329, 1931, 2023
BciVI	GTATCC	1 cut(s)	1723
BclI	TGATCA	1 cut(s)	1006
BcoDI	GTCTC	2 cut(s)	2, 1553
BfaI	CTAG	7 cut(s)	416, 840, 1128, 1523, 1746, 1884, 2016
BfmI	CTRYAG	1 cut(s)	1119
BfuAI	ACCTGC	2 cut(s)	236, 1898
BfuI	GTATCC	1 cut(s)	1723
BglI	GCCNNNNNGGC	1 cut(s)	177
BglII	AGATCT	1 cut(s)	1300
BisI	GCNGC	6 cut(s)	20, 132, 1794, 1797, 1839, 1842
BlsI	GCNGC	6 cut(s)	21, 133, 1795, 1798, 1840, 1843
Bme1390I	CCNGG	4 cut(s)	1134, 1329, 1931, 2023
Bme18I	GGWCC	5 cut(s)	37, 66, 726, 1452, 2042
BmgBI	CACGTC	1 cut(s)	148
BmgT120I	GGNCC	6 cut(s)	37, 66, 726, 1452, 2019, 2042
BmiI	GGNNCC	4 cut(s)	1454, 1533, 1670, 2043
BmrFI	CCNGG	4 cut(s)	1134, 1329, 1931, 2023
BmrI	ACTGGG	1 cut(s)	747
BmsI	GCATC	2 cut(s)	1580, 1853
BmuI	ACTGGG	1 cut(s)	747
BpiI	GAAGAC	2 cut(s)	142, 1110
BpmI	CTGGAG	4 cut(s)	582, 699, 1716, 2044
Bpu10I	CCTNAGC	1 cut(s)	1814
BpuEI	CTTGAG	3 cut(s)	1400, 1712, 1754
Bsa29I	ATCGAT	1 cut(s)	1644
BsaJI	CCNNGG	3 cut(s)	192, 1156, 2021
BsaWI	WCCGGW	3 cut(s)	454, 469, 952
Bsc4I	CCNNNNNNNGG	6 cut(s)	501, 1406, 1602, 1603, 1722, 2027
Bse118I	RCCGGY	3 cut(s)	39, 211, 952
Bse1I	ACTGG	8 cut(s)	436, 565, 682, 753, 1202, 1392, 1699, 1716
BseBI	CCWGG	4 cut(s)	1134, 1329, 1931, 2023
BseCI	ATCGAT	1 cut(s)	1644
BseDI	CCNNGG	3 cut(s)	192, 1156, 2021
BseGI	GGATG	8 cut(s)	202, 304, 355, 430, 572, 700, 1592, 1924
BseLI	CCNNNNNNNGG	6 cut(s)	501, 1406, 1602, 1603, 1722, 2027
BseMII	CTCAG	7 cut(s)	41, 513, 914, 1566, 1802, 1847, 1976
BseNI	ACTGG	8 cut(s)	436, 565, 682, 753, 1202, 1392, 1699, 1716
BseRI	GAGGAG	4 cut(s)	131, 173, 392, 1571
BseSI	GKGCMC	1 cut(s)	1891
BseXI	GCAGC	5 cut(s)	6, 1780, 1783, 1825, 1828
BseYI	CCCAGC	1 cut(s)	1974
Bsh1236I	CGCG	1 cut(s)	24
BshFI	GGCC	4 cut(s)	180, 866, 1132, 2020
BshTI	ACCGGT	1 cut(s)	952
BshVI	ATCGAT	1 cut(s)	1644
BsiHKAI	GWGCWC	5 cut(s)	530, 853, 1386, 1891, 2006
BsiSI	CCGG	6 cut(s)	40, 79, 212, 455, 470, 953
BslFI	GGGAC	1 cut(s)	563
BslI	CCNNNNNNNGG	6 cut(s)	501, 1406, 1602, 1603, 1722, 2027
BsmAI	GTCTC	2 cut(s)	2, 1553
BsmFI	GGGAC	1 cut(s)	563
BsmI	GAATGC	1 cut(s)	1945
BsnI	GGCC	4 cut(s)	180, 866, 1132, 2020
Bsp1286I	GDGCHC	6 cut(s)	530, 853, 1386, 1753, 1891, 2006
Bsp143I	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
Bsp19I	CCATGG	1 cut(s)	192
BspACI	CCGC	6 cut(s)	82, 112, 132, 347, 1651, 1952
BspANI	GGCC	4 cut(s)	180, 866, 1132, 2020
BspCNI	CTCAG	7 cut(s)	42, 514, 913, 1567, 1801, 1846, 1975
BspDI	ATCGAT	1 cut(s)	1644
BspFNI	CGCG	1 cut(s)	24
BspLI	GGNNCC	4 cut(s)	1454, 1533, 1670, 2043
BspMI	ACCTGC	2 cut(s)	236, 1898
BsrFI	RCCGGY	3 cut(s)	39, 211, 952
BsrI	ACTGG	8 cut(s)	436, 565, 682, 753, 1202, 1392, 1699, 1716
BssAI	RCCGGY	3 cut(s)	39, 211, 952
BssECI	CCNNGG	3 cut(s)	192, 1156, 2021
BssMI	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
BssSI	CACGAG	2 cut(s)	1878, 2005
BssT1I	CCWWGG	1 cut(s)	192
Bst2BI	CACGAG	2 cut(s)	1878, 2005
Bst2UI	CCWGG	4 cut(s)	1134, 1329, 1931, 2023
Bst4CI	ACNGT	5 cut(s)	13, 311, 770, 797, 1494
Bst6I	CTCTTC	5 cut(s)	414, 533, 875, 903, 1335
BstAPI	GCANNNNNTGC	1 cut(s)	1940
BstC8I	GCNNGC	1 cut(s)	213
BstDEI	CTNAG	8 cut(s)	50, 522, 900, 1575, 1788, 1814, 1833, 1962
BstDSI	CCRYGG	1 cut(s)	192
BstF5I	GGATG	8 cut(s)	202, 304, 355, 430, 572, 700, 1592, 1924
BstFNI	CGCG	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	24, 2036, 2068
BstKTI	GATC	6 cut(s)	512, 1009, 1177, 1303, 1414, 1702
BstMAI	GTCTC	2 cut(s)	2, 1553
BstMBI	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
BstMWI	GCNNNNNNNGC	5 cut(s)	177, 772, 1940, 1949, 2074
BstNI	CCWGG	4 cut(s)	1134, 1329, 1931, 2023
BstSCI	CCNGG	4 cut(s)	1132, 1327, 1929, 2021
BstSFI	CTRYAG	1 cut(s)	1119
BstSLI	GKGCMC	1 cut(s)	1891
BstUI	CGCG	1 cut(s)	24
BstV1I	GCAGC	5 cut(s)	6, 1780, 1783, 1825, 1828
BstV2I	GAAGAC	2 cut(s)	142, 1110
BstX2I	RGATCY	1 cut(s)	1300
BstYI	RGATCY	1 cut(s)	1300
Bsu15I	ATCGAT	1 cut(s)	1644
BsuI	GTATCC	1 cut(s)	1723
BsuRI	GGCC	4 cut(s)	180, 866, 1132, 2020
BsuTUI	ATCGAT	1 cut(s)	1644
BtgI	CCRYGG	1 cut(s)	192
BtrI	CACGTC	1 cut(s)	148
BtsCI	GGATG	8 cut(s)	202, 304, 355, 430, 572, 700, 1592, 1924
BtsIMutI	CAGTG	6 cut(s)	262, 760, 1209, 1223, 1399, 1692
BveI	ACCTGC	2 cut(s)	236, 1898
Cac8I	GCNNGC	1 cut(s)	213
CaiI	CAGNNNCTG	1 cut(s)	1694
CfoI	GCGC	3 cut(s)	24, 2036, 2068
Cfr10I	RCCGGY	3 cut(s)	39, 211, 952
Cfr13I	GGNCC	6 cut(s)	37, 66, 726, 1452, 2019, 2042
ClaI	ATCGAT	1 cut(s)	1644
CseI	GACGC	1 cut(s)	623
Csp6I	GTAC	5 cut(s)	1306, 1397, 1495, 1526, 1580
CspAI	ACCGGT	1 cut(s)	952
CspCI	CAANNNNNGTGG	2 cut(s)	149, 184
CviAII	CATG	4 cut(s)	193, 289, 892, 1914
CviQI	GTAC	5 cut(s)	1306, 1397, 1495, 1526, 1580
DdeI	CTNAG	8 cut(s)	50, 522, 900, 1575, 1788, 1814, 1833, 1962
DpnI	GATC	6 cut(s)	511, 1008, 1176, 1302, 1413, 1701
DpnII	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
DraIII	CACNNNGTG	1 cut(s)	755
Eam1104I	CTCTTC	5 cut(s)	414, 533, 875, 903, 1335
EarI	CTCTTC	5 cut(s)	414, 533, 875, 903, 1335
EciI	GGCGGA	1 cut(s)	97
Ecl136II	GAGCTC	3 cut(s)	528, 1384, 2004
Eco130I	CCWWGG	1 cut(s)	192
Eco24I	GRGCYC	4 cut(s)	530, 1386, 1753, 2006
Eco47I	GGWCC	5 cut(s)	37, 66, 726, 1452, 2042
Eco53kI	GAGCTC	3 cut(s)	528, 1384, 2004
Eco57I	CTGAAG	3 cut(s)	1089, 1479, 1792
EcoICRI	GAGCTC	3 cut(s)	528, 1384, 2004
EcoO109I	RGGNCCY	1 cut(s)	2019
EcoRI	GAATTC	1 cut(s)	29
EcoRII	CCWGG	4 cut(s)	1132, 1327, 1929, 2021
EcoT14I	CCWWGG	1 cut(s)	192
EcoT38I	GRGCYC	4 cut(s)	530, 1386, 1753, 2006
ErhI	CCWWGG	1 cut(s)	192
FaeI	CATG	4 cut(s)	196, 292, 895, 1917
FalI	AAGNNNNNCTT	2 cut(s)	1941, 1973
FaqI	GGGAC	1 cut(s)	563
FatI	CATG	4 cut(s)	192, 288, 891, 1913
FbaI	TGATCA	1 cut(s)	1006
Fnu4HI	GCNGC	6 cut(s)	20, 132, 1794, 1797, 1839, 1842
FokI	GGATG	8 cut(s)	209, 311, 362, 437, 579, 707, 1579, 1931
FriOI	GRGCYC	4 cut(s)	530, 1386, 1753, 2006
Fsp4HI	GCNGC	6 cut(s)	20, 132, 1794, 1797, 1839, 1842
FspBI	CTAG	7 cut(s)	416, 840, 1128, 1523, 1746, 1884, 2016
GlaI	GCGC	3 cut(s)	23, 2035, 2067
GluI	GCNGC	6 cut(s)	20, 132, 1794, 1797, 1839, 1842
GsaI	CCCAGC	1 cut(s)	1978
GsuI	CTGGAG	4 cut(s)	582, 699, 1716, 2044
HaeIII	GGCC	4 cut(s)	180, 866, 1132, 2020
HapII	CCGG	6 cut(s)	40, 79, 212, 455, 470, 953
HgaI	GACGC	1 cut(s)	623
HhaI	GCGC	3 cut(s)	24, 2036, 2068
Hin1II	CATG	4 cut(s)	196, 292, 895, 1917
Hin6I	GCGC	3 cut(s)	22, 2034, 2066
HinP1I	GCGC	3 cut(s)	22, 2034, 2066
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HindIII	AAGCTT	2 cut(s)	362, 1376
HinfI	GANTC	9 cut(s)	75, 91, 164, 221, 649, 698, 1313, 1345, 1358
HpaII	CCGG	6 cut(s)	40, 79, 212, 455, 470, 953
HphI	GGTGA	3 cut(s)	608, 698, 1421
Hpy166II	GTNNAC	5 cut(s)	225, 672, 1397, 1889, 2010
Hpy188III	TCNNGA	9 cut(s)	97, 385, 779, 1349, 1535, 1729, 1771, 1964, 1995
Hpy8I	GTNNAC	5 cut(s)	225, 672, 1397, 1889, 2010
Hpy99I	CGWCG	3 cut(s)	74, 639, 858
HpyAV	CCTTC	8 cut(s)	382, 388, 655, 898, 1237, 1396, 1400, 1992
HpyCH4III	ACNGT	5 cut(s)	13, 311, 770, 797, 1494
HpyCH4IV	ACGT	3 cut(s)	147, 856, 1110
HpyF10VI	GCNNNNNNNGC	5 cut(s)	177, 772, 1940, 1949, 2074
HpyF3I	CTNAG	8 cut(s)	50, 522, 900, 1575, 1788, 1814, 1833, 1962
HpySE526I	ACGT	3 cut(s)	147, 856, 1110
Hsp92II	CATG	4 cut(s)	196, 292, 895, 1917
HspAI	GCGC	3 cut(s)	22, 2034, 2066
KroI	GCCGGC	1 cut(s)	211
KroNI	GCCGGC	1 cut(s)	213
Ksp22I	TGATCA	1 cut(s)	1006
Kzo9I	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
LmnI	GCTCC	4 cut(s)	84, 533, 1954, 2001
Lsp1109I	GCAGC	5 cut(s)	6, 1780, 1783, 1825, 1828
LweI	GCATC	2 cut(s)	1580, 1853
MaeI	CTAG	7 cut(s)	416, 840, 1128, 1523, 1746, 1884, 2016
MaeII	ACGT	3 cut(s)	147, 856, 1110
MaeIII	GTNAC	5 cut(s)	57, 927, 1123, 1488, 1690
MalI	GATC	6 cut(s)	511, 1008, 1176, 1302, 1413, 1701
MboI	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
MflI	RGATCY	1 cut(s)	1300
MhlI	GDGCHC	6 cut(s)	530, 853, 1386, 1753, 1891, 2006
MluCI	AATT	6 cut(s)	29, 282, 1037, 1197, 1416, 1436
MlyI	GAGTC	4 cut(s)	69, 230, 658, 1322
MmeI	TCCRAC	4 cut(s)	147, 420, 1459, 2069
MroNI	GCCGGC	1 cut(s)	211
MroXI	GAANNNNTTC	2 cut(s)	588, 1344
MseI	TTAA	5 cut(s)	459, 957, 1371, 1860, 2060
MslI	CAYNNNNRTG	1 cut(s)	191
MspI	CCGG	6 cut(s)	40, 79, 212, 455, 470, 953
MspR9I	CCNGG	4 cut(s)	1134, 1329, 1931, 2023
Mva1269I	GAATGC	1 cut(s)	1945
MvaI	CCWGG	4 cut(s)	1134, 1329, 1931, 2023
MvnI	CGCG	1 cut(s)	24
MwoI	GCNNNNNNNGC	5 cut(s)	177, 772, 1940, 1949, 2074
NaeI	GCCGGC	1 cut(s)	213
NcoI	CCATGG	1 cut(s)	192
NdeII	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
NgoMIV	GCCGGC	1 cut(s)	211
NlaIII	CATG	4 cut(s)	196, 292, 895, 1917
NlaIV	GGNNCC	4 cut(s)	1454, 1533, 1670, 2043
NmuCI	GTSAC	3 cut(s)	57, 1488, 1690
PaqCI	CACCTGC	2 cut(s)	236, 1898
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	1945
PdiI	GCCGGC	1 cut(s)	213
PdmI	GAANNNNTTC	2 cut(s)	588, 1344
PfeI	GAWTC	5 cut(s)	91, 164, 698, 1345, 1358
PinAI	ACCGGT	1 cut(s)	952
PkrI	GCNGC	6 cut(s)	21, 133, 1795, 1798, 1840, 1843
PleI	GAGTC	4 cut(s)	69, 229, 657, 1321
PpsI	GAGTC	4 cut(s)	69, 229, 657, 1321
Psp124BI	GAGCTC	3 cut(s)	530, 1386, 2006
Psp1406I	AACGTT	1 cut(s)	1110
Psp6I	CCWGG	4 cut(s)	1132, 1327, 1929, 2021
PspFI	CCCAGC	1 cut(s)	1974
PspGI	CCWGG	4 cut(s)	1132, 1327, 1929, 2021
PspN4I	GGNNCC	4 cut(s)	1454, 1533, 1670, 2043
PspPI	GGNCC	6 cut(s)	37, 66, 726, 1452, 2019, 2042
PstNI	CAGNNNCTG	1 cut(s)	1694
PsuI	RGATCY	1 cut(s)	1300
RsaI	GTAC	5 cut(s)	1307, 1398, 1496, 1527, 1581
RsaNI	GTAC	5 cut(s)	1306, 1397, 1495, 1526, 1580
RseI	CAYNNNNRTG	1 cut(s)	191
SacI	GAGCTC	3 cut(s)	530, 1386, 2006
SaqAI	TTAA	5 cut(s)	459, 957, 1371, 1860, 2060
SatI	GCNGC	6 cut(s)	20, 132, 1794, 1797, 1839, 1842
Sau3AI	GATC	6 cut(s)	509, 1006, 1174, 1300, 1411, 1699
Sau96I	GGNCC	6 cut(s)	37, 66, 726, 1452, 2019, 2042
SchI	GAGTC	4 cut(s)	69, 230, 658, 1322
ScrFI	CCNGG	4 cut(s)	1134, 1329, 1931, 2023
SduI	GDGCHC	6 cut(s)	530, 853, 1386, 1753, 1891, 2006
SfaNI	GCATC	2 cut(s)	1580, 1853
SfcI	CTRYAG	1 cut(s)	1119
SinI	GGWCC	5 cut(s)	37, 66, 726, 1452, 2042
SmiMI	CAYNNNNRTG	1 cut(s)	191
SmlI	CTYRAG	3 cut(s)	1379, 1727, 1769
SmoI	CTYRAG	3 cut(s)	1379, 1727, 1769
Sse9I	AATT	6 cut(s)	29, 282, 1037, 1197, 1416, 1436
SsiI	CCGC	6 cut(s)	82, 112, 132, 347, 1651, 1952
SspMI	CTAG	7 cut(s)	416, 840, 1128, 1523, 1746, 1884, 2016
SstI	GAGCTC	3 cut(s)	530, 1386, 2006
StyD4I	CCNGG	4 cut(s)	1132, 1327, 1929, 2021
StyI	CCWWGG	1 cut(s)	192
TaaI	ACNGT	5 cut(s)	13, 311, 770, 797, 1494
TaiI	ACGT	3 cut(s)	150, 859, 1113
TaqI	TCGA	5 cut(s)	153, 384, 853, 1474, 1644
TaqII	GACCGA	1 cut(s)	83
TasI	AATT	6 cut(s)	29, 282, 1037, 1197, 1416, 1436
TatI	WGTACW	2 cut(s)	1494, 1525
TauI	GCSGC	1 cut(s)	134
TfiI	GAWTC	5 cut(s)	91, 164, 698, 1345, 1358
Tru1I	TTAA	5 cut(s)	459, 957, 1371, 1860, 2060
Tru9I	TTAA	5 cut(s)	459, 957, 1371, 1860, 2060
TscAI	CASTG	6 cut(s)	262, 760, 1209, 1223, 1399, 1699
TseFI	GTSAC	3 cut(s)	57, 1488, 1690
TseI	GCWGC	5 cut(s)	19, 1793, 1796, 1838, 1841
Tsp45I	GTSAC	3 cut(s)	57, 1488, 1690
TspGWI	ACGGA	3 cut(s)	20, 87, 1754
TspRI	CASTG	6 cut(s)	262, 760, 1209, 1223, 1399, 1699
VneI	GTGCAC	1 cut(s)	1887
VpaK11BI	GGWCC	5 cut(s)	37, 66, 726, 1452, 2042
XapI	RAATTY	2 cut(s)	29, 1197
XmnI	GAANNNNTTC	2 cut(s)	588, 1344
XspI	CTAG	7 cut(s)	416, 840, 1128, 1523, 1746, 1884, 2016

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.