Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0005789

Physical Location & Seq

Genomic Coordinates Reverse (-)

55239069 .. 55243636

Gene Structure 4568 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00374210.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2166 bp

ATGAGCCCGTACTGCACCAGGCCCACAGCCACGAGAAAATCAGAGCTGAAAGCATTCACATCACAGAGCACCGACGGACTCCGGCGGAGCTGGATTCTCCTGAAACCTCAACACCGCACCATCTCTGACCTCGCCGCCTATCTCCTCCACGTCTTCGACCTCCACGATTCTTGCCCCGATGGCCTCCTCATCTCCATGGATGAGTTTGTGTTGCCACCGTTCGAGTCCACCTGCATTTTCAAGGATAAAGATATTGTCAGTGTGAAAAGGAAAGGTGTGTCTGAAGTTGACATGATTGAGGATGGAAGAAACTGTATTGAGGTTGAAGAAATCGTGGAGAGGCAACTTGCGAATGGAGGTATGAAGCTTCTGGCTAATGAGGAGTTCGAGAAGGAGAAGGGAGGGTATGAAAGTGATCTAGAAGAGGATGAACCTGACCAGTTGGAAGATATATTGCCTGTTAAAAATGCGCCAGACAACGATACGAGCACACATTCCAAGAAAAGGAAGCGATCAAATAAACCGGGGAGCTCCAAGAAGAAGAGAAGTAAATCTGCTACTGCTGGAGGATGCTCAGTTGTCCCAGAAGATGTTCAAGGTGATGTCCAAGAGGACAAGAACAGAAGCTCTCATAAGCGTCGTGTCAGAAAGAGTCTTTCCAAGAAGGAAAAGTCAACTACTGGAGAGGGTGAGCTGGATGATTCAAGCACCTCTGAAACTGATAAAAGGACCAATAACATAAGTCATTCTACACCCAGTGCAAACAGGCACAGTCAGCTTCAAGAGAATGGCATGAACGGTGTTGTTTCATCTGACAAGCCTGATGAAAGTAAAAAGTTGCCTAGTAGAAGTGCTCGACGTAAAAAGGCCAAAAGAATATGGAAGAGGGAAAACATGAAAGCTCAGAAGGCAGAGTTACATCAGACACAGGTAGGCAAACTGGTTAATCAGCAGTCATCTGACAAAGATAATCAGAAATCATCAAACAAAGCTGATCAACAATCATCTGACAAAGCTAATCAGCAATTATCTGACAAAGATAATCAGAAAAGCTCTGAAGAAGATGAACCAAATACAGATAATGATGAAGAAGACAACGTTGTTCCTGTAGTAACTAGGCCAGGACACATTCGCTTTGCACCCCTTGGTAAAGTGGAAGCAGATCAGAGTTTCCAGCATAATGAAATTCCAGTGAAAACTTTTCAGTGGAATGGAATAACCAGCAAGAAGAAGGGTCAAAAATGGGGTATGGAGAAAACATCATATTCAAATAAGAGCAACTATGAAGATCTGTACCAAGAGTCATCTGAAATGCCTGGTATTGAAGAAGAGATTCCTGAAAATGATCCCATAGACTTTAATAAGCTTGAGCTCTCTACCAGTGTACTGAAGGAAGGTGATCTAATTGCATATCGGTTGATTGAATTATCATCATGCTGGACCCCTGAAGTTTCTTCCTATCGAGTTGGAAAAGTGTCACAGTACAACCCTCAATCAAATAAGATTTTGCTAGTACAGGTTCCAGAATATCCCATTGTTTTTGAGGAGACAGATGAGGCATCTGAGGTACAACCTGATACATCCCTTTATGGGGAAGATGGTTCTTTAGAGATAGATTATTCTTCTCTTATCGATGTCCGCATTGTCAAGTATGGGAACCTGAACACAGCCAAAGCAGTCACTGGAGATCAAAATGATGTATCCAGTTTTAGGCTCAAGAATGGCATGGAAAGTAGGGCTCTATCAGGTTTCAGGCTCAAGAATGACAAAGAAACTCAGGCTGCTGCATTAGGCTTCAGGCTTAAGAATGACAAGGGAACTCAGGCTGCTGCATCAGGTTTCAGTATTAAGAATGACAAGGAAACTCGTGCTAGTGCTACACAAGAAAATGGAAAAGCAGGTGCATGGGATGAAATCAGCCAGGCATTGAATGCAAAGAAGGCGGAGCTTTCTCAGGAAGATGGCTGGGGTAAAAATGATGGTTCAGGAAGGGGCTCGTGGACATCTAGGCCCTGGAGGGGTAGCGCATTGGGTCCAACAATGGCTCTTTTAAGAGCGCAAAGTCCGTGGAAGAACACCCTTTTGAATCGTGATGATGATGATGATGGTAGAATGTTGCTTAATGAGCTCTTACGTTTCTCCTCAGATATGAAGAGAAACAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0010467 GO:0016070 GO:0017069 GO:0030619 GO:0030620 GO:0034641 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Coilin_N

Protein Analysis

721

Amino Acids

80.69

Weight (kDa)

5.71

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Coilin_N	PF15862	19 - 180	9.9e-11	Coilin N-terminus
Tudor_Coilin	PF23086	449 - 551	1.5e-45	Coilin, C-terminal Tudor domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005789)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G13030
fragaria_vesca	FvH4_4g25440 FvH4_4g25440 FvH4_4g25440 FvH4_4g25440 FvH4_4g25440
malus_domestica	MD13G1102900.v1.1 MD16G1103100.v1.1
prunus_persica	Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1 Prupe.1G242900_v2.0.a1
pyrus_communis	pycom13g09000 pycom16g08780
rosa_chinensis	RchiOBHm_Chr4g0432751
rosa_laevigata	RLG00000006815
rosa_multiflora	Rmu_sc0012180.1_g000008
rosa_roxburghii	Rroxscaffold_5G00374210
rosa_rugosa	Rorug04G0262200 Rorug04G0262200
rosa_samantha	Rh4AG316700 Rh4BG324800 Rh4CG339800 Rh4DG320000
rosa_wichuraiana	Rw4G027550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	239, 1889
Acc36I	ACCTGC	2 cut(s)	239, 1889
AciI	CCGC	5 cut(s)	85, 115, 135, 1639, 1943
AclI	AACGTT	1 cut(s)	1098
AclWI	GGATC	1 cut(s)	1340
AcsI	RAATTY	1 cut(s)	1185
AcuI	CTGAAG	5 cut(s)	303, 1077, 1409, 1467, 1780
AdeI	CACNNNGTG	1 cut(s)	758
AfaI	GTAC	6 cut(s)	11, 1295, 1386, 1484, 1515, 1569
AfiI	CCNNNNNNNGG	5 cut(s)	504, 1590, 1591, 1710, 2018
AflII	CTTAAG	1 cut(s)	1802
AjiI	CACGTC	1 cut(s)	151
AjnI	CCWGG	5 cut(s)	17, 1120, 1315, 1920, 2012
Alw21I	GWGCWC	6 cut(s)	71, 491, 533, 856, 1374, 2130
Alw26I	GTCTC	1 cut(s)	1541
AlwI	GGATC	1 cut(s)	1340
AlwNI	CAGNNNCTG	1 cut(s)	1682
AoxI	GGCC	5 cut(s)	20, 181, 867, 1118, 2009
ApeKI	GCWGC	4 cut(s)	1781, 1784, 1826, 1829
ApoI	RAATTY	1 cut(s)	1185
Asp700I	GAANNNNTTC	3 cut(s)	53, 591, 1332
AspLEI	GCGC	3 cut(s)	472, 2027, 2059
AspS9I	GGNCC	5 cut(s)	21, 729, 1440, 2010, 2033
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	3 cut(s)	611, 701, 1409
AvaII	GGWCC	3 cut(s)	729, 1440, 2033
BanII	GRGCYC	6 cut(s)	8, 533, 1374, 1741, 1997, 2130
BauI	CACGAG	3 cut(s)	31, 1866, 1996
BbsI	GAAGAC	2 cut(s)	145, 1098
Bbv12I	GWGCWC	6 cut(s)	71, 491, 533, 856, 1374, 2130
BbvI	GCAGC	4 cut(s)	1768, 1771, 1813, 1816
BccI	CCATC	7 cut(s)	128, 173, 296, 1592, 1955, 1973, 2099
BciT130I	CCWGG	5 cut(s)	19, 1122, 1317, 1922, 2014
BciVI	GTATCC	1 cut(s)	1711
BclI	TGATCA	1 cut(s)	994
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	1 cut(s)	1541
BfaI	CTAG	6 cut(s)	419, 843, 1116, 1511, 1872, 2007
BfmI	CTRYAG	1 cut(s)	1107
BfrI	CTTAAG	1 cut(s)	1802
BfuAI	ACCTGC	2 cut(s)	239, 1889
BfuI	GTATCC	1 cut(s)	1711
BglI	GCCNNNNNGGC	1 cut(s)	180
BglII	AGATCT	1 cut(s)	1288
BisI	GCNGC	5 cut(s)	135, 1782, 1785, 1827, 1830
BlsI	GCNGC	5 cut(s)	136, 1783, 1786, 1828, 1831
Bme1390I	CCNGG	6 cut(s)	19, 525, 1122, 1317, 1922, 2014
Bme18I	GGWCC	3 cut(s)	729, 1440, 2033
BmgBI	CACGTC	1 cut(s)	151
BmgT120I	GGNCC	5 cut(s)	21, 729, 1440, 2010, 2033
BmiI	GGNNCC	4 cut(s)	1442, 1521, 1658, 2034
BmrFI	CCNGG	6 cut(s)	19, 525, 1122, 1317, 1922, 2014
BmrI	ACTGGG	1 cut(s)	750
BmsI	GCATC	3 cut(s)	560, 1568, 1841
BmuI	ACTGGG	1 cut(s)	750
BpiI	GAAGAC	2 cut(s)	145, 1098
BpmI	CTGGAG	4 cut(s)	585, 702, 1704, 2035
BpuEI	CTTGAG	3 cut(s)	1388, 1700, 1742
BpuMI	CCSGG	1 cut(s)	525
Bsa29I	ATCGAT	1 cut(s)	1632
BsaJI	CCNNGG	5 cut(s)	195, 524, 1144, 2012, 2066
Bsc4I	CCNNNNNNNGG	5 cut(s)	504, 1590, 1591, 1710, 2018
Bse1I	ACTGG	8 cut(s)	439, 685, 756, 945, 1190, 1380, 1687, 1704
BseBI	CCWGG	5 cut(s)	19, 1122, 1317, 1922, 2014
BseCI	ATCGAT	1 cut(s)	1632
BseDI	CCNNGG	5 cut(s)	195, 524, 1144, 2012, 2066
BseGI	GGATG	7 cut(s)	205, 307, 433, 575, 703, 1580, 1915
BseLI	CCNNNNNNNGG	5 cut(s)	504, 1590, 1591, 1710, 2018
BseMII	CTCAG	7 cut(s)	588, 917, 1554, 1790, 1835, 1967, 2157
BseNI	ACTGG	8 cut(s)	439, 685, 756, 945, 1190, 1380, 1687, 1704
BseRI	GAGGAG	5 cut(s)	134, 176, 395, 1559, 2131
BseXI	GCAGC	4 cut(s)	1768, 1771, 1813, 1816
BseYI	CCCAGC	1 cut(s)	1965
BshFI	GGCC	5 cut(s)	22, 183, 869, 1120, 2011
BshVI	ATCGAT	1 cut(s)	1632
BsiHKAI	GWGCWC	6 cut(s)	71, 491, 533, 856, 1374, 2130
BsiSI	CCGG	2 cut(s)	82, 524
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	5 cut(s)	504, 1590, 1591, 1710, 2018
BsmAI	GTCTC	1 cut(s)	1541
BsmFI	GGGAC	1 cut(s)	566
BsmI	GAATGC	2 cut(s)	53, 1936
BsnI	GGCC	5 cut(s)	22, 183, 869, 1120, 2011
Bsp1286I	GDGCHC	9 cut(s)	8, 71, 491, 533, 856, 1374, 1741, 1997, 2130
Bsp143I	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
Bsp19I	CCATGG	1 cut(s)	195
BspACI	CCGC	5 cut(s)	85, 115, 135, 1639, 1943
BspANI	GGCC	5 cut(s)	22, 183, 869, 1120, 2011
BspCNI	CTCAG	7 cut(s)	587, 916, 1555, 1789, 1834, 1966, 2156
BspDI	ATCGAT	1 cut(s)	1632
BspLI	GGNNCC	4 cut(s)	1442, 1521, 1658, 2034
BspMI	ACCTGC	2 cut(s)	239, 1889
BspPI	GGATC	1 cut(s)	1340
BspTI	CTTAAG	1 cut(s)	1802
BsrI	ACTGG	8 cut(s)	439, 685, 756, 945, 1190, 1380, 1687, 1704
BssECI	CCNNGG	5 cut(s)	195, 524, 1144, 2012, 2066
BssMI	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
BssSI	CACGAG	3 cut(s)	31, 1866, 1996
BssT1I	CCWWGG	2 cut(s)	195, 1144
Bst2BI	CACGAG	3 cut(s)	31, 1866, 1996
Bst2UI	CCWGG	5 cut(s)	19, 1122, 1317, 1922, 2014
Bst4CI	ACNGT	5 cut(s)	219, 314, 773, 800, 1482
Bst6I	CTCTTC	5 cut(s)	417, 536, 878, 1323, 2147
BstAFI	CTTAAG	1 cut(s)	1802
BstAPI	GCANNNNNTGC	1 cut(s)	1931
BstDEI	CTNAG	7 cut(s)	574, 903, 1563, 1776, 1821, 1953, 2143
BstDSI	CCRYGG	2 cut(s)	195, 2066
BstF5I	GGATG	7 cut(s)	205, 307, 433, 575, 703, 1580, 1915
BstHHI	GCGC	3 cut(s)	472, 2027, 2059
BstKTI	GATC	8 cut(s)	418, 515, 997, 1165, 1291, 1348, 1402, 1690
BstMAI	GTCTC	1 cut(s)	1541
BstMBI	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
BstMWI	GCNNNNNNNGC	7 cut(s)	12, 180, 775, 908, 1931, 1940, 2125
BstNI	CCWGG	5 cut(s)	19, 1122, 1317, 1922, 2014
BstSCI	CCNGG	6 cut(s)	17, 523, 1120, 1315, 1920, 2012
BstSFI	CTRYAG	1 cut(s)	1107
BstV1I	GCAGC	4 cut(s)	1768, 1771, 1813, 1816
BstV2I	GAAGAC	2 cut(s)	145, 1098
BstX2I	RGATCY	1 cut(s)	1288
BstYI	RGATCY	1 cut(s)	1288
Bsu15I	ATCGAT	1 cut(s)	1632
BsuI	GTATCC	1 cut(s)	1711
BsuRI	GGCC	5 cut(s)	22, 183, 869, 1120, 2011
BsuTUI	ATCGAT	1 cut(s)	1632
BtgI	CCRYGG	2 cut(s)	195, 2066
BtrI	CACGTC	1 cut(s)	151
BtsCI	GGATG	7 cut(s)	205, 307, 433, 575, 703, 1580, 1915
BtsIMutI	CAGTG	6 cut(s)	265, 763, 1197, 1211, 1387, 1680
BveI	ACCTGC	2 cut(s)	239, 1889
CaiI	CAGNNNCTG	1 cut(s)	1682
CfoI	GCGC	3 cut(s)	472, 2027, 2059
Cfr13I	GGNCC	5 cut(s)	21, 729, 1440, 2010, 2033
ClaI	ATCGAT	1 cut(s)	1632
CseI	GACGC	1 cut(s)	626
Csp6I	GTAC	6 cut(s)	10, 1294, 1385, 1483, 1514, 1568
CspCI	CAANNNNNGTGG	4 cut(s)	152, 187, 2048, 2083
CviAII	CATG	7 cut(s)	196, 292, 793, 895, 1434, 1726, 1905
CviQI	GTAC	6 cut(s)	10, 1294, 1385, 1483, 1514, 1568
DdeI	CTNAG	7 cut(s)	574, 903, 1563, 1776, 1821, 1953, 2143
DpnI	GATC	8 cut(s)	417, 514, 996, 1164, 1290, 1347, 1401, 1689
DpnII	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
DraIII	CACNNNGTG	1 cut(s)	758
Eam1104I	CTCTTC	5 cut(s)	417, 536, 878, 1323, 2147
EarI	CTCTTC	5 cut(s)	417, 536, 878, 1323, 2147
EciI	GGCGGA	2 cut(s)	100, 1958
Ecl136II	GAGCTC	3 cut(s)	531, 1372, 2128
Eco130I	CCWWGG	2 cut(s)	195, 1144
Eco24I	GRGCYC	6 cut(s)	8, 533, 1374, 1741, 1997, 2130
Eco47I	GGWCC	3 cut(s)	729, 1440, 2033
Eco53kI	GAGCTC	3 cut(s)	531, 1372, 2128
Eco57I	CTGAAG	5 cut(s)	303, 1077, 1409, 1467, 1780
EcoICRI	GAGCTC	3 cut(s)	531, 1372, 2128
EcoO109I	RGGNCCY	1 cut(s)	2010
EcoRII	CCWGG	5 cut(s)	17, 1120, 1315, 1920, 2012
EcoT14I	CCWWGG	2 cut(s)	195, 1144
EcoT38I	GRGCYC	6 cut(s)	8, 533, 1374, 1741, 1997, 2130
ErhI	CCWWGG	2 cut(s)	195, 1144
FaeI	CATG	7 cut(s)	199, 295, 796, 898, 1437, 1729, 1908
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	7 cut(s)	195, 291, 792, 894, 1433, 1725, 1904
FbaI	TGATCA	1 cut(s)	994
Fnu4HI	GCNGC	5 cut(s)	135, 1782, 1785, 1827, 1830
FokI	GGATG	7 cut(s)	212, 314, 440, 582, 710, 1567, 1922
FriOI	GRGCYC	6 cut(s)	8, 533, 1374, 1741, 1997, 2130
Fsp4HI	GCNGC	5 cut(s)	135, 1782, 1785, 1827, 1830
FspBI	CTAG	6 cut(s)	419, 843, 1116, 1511, 1872, 2007
GlaI	GCGC	3 cut(s)	471, 2026, 2058
GluI	GCNGC	5 cut(s)	135, 1782, 1785, 1827, 1830
GsaI	CCCAGC	1 cut(s)	1969
GsuI	CTGGAG	4 cut(s)	585, 702, 1704, 2035
HaeIII	GGCC	5 cut(s)	22, 183, 869, 1120, 2011
HapII	CCGG	2 cut(s)	82, 524
HgaI	GACGC	1 cut(s)	626
HhaI	GCGC	3 cut(s)	472, 2027, 2059
Hin1II	CATG	7 cut(s)	199, 295, 796, 898, 1437, 1729, 1908
Hin6I	GCGC	3 cut(s)	470, 2025, 2057
HinP1I	GCGC	3 cut(s)	470, 2025, 2057
HincII	GTYRAC	2 cut(s)	289, 675
HindII	GTYRAC	2 cut(s)	289, 675
HindIII	AAGCTT	2 cut(s)	365, 1364
HinfI	GANTC	9 cut(s)	78, 94, 167, 224, 652, 701, 1301, 1333, 2086
HpaII	CCGG	2 cut(s)	82, 524
HphI	GGTGA	3 cut(s)	611, 701, 1409
Hpy166II	GTNNAC	5 cut(s)	228, 289, 675, 1385, 2001
Hpy8I	GTNNAC	5 cut(s)	228, 289, 675, 1385, 2001
Hpy99I	CGWCG	3 cut(s)	77, 642, 861
HpyAV	CCTTC	9 cut(s)	385, 391, 658, 901, 1225, 1384, 1388, 1933, 1983
HpyCH4III	ACNGT	5 cut(s)	219, 314, 773, 800, 1482
HpyCH4IV	ACGT	4 cut(s)	150, 859, 1098, 2134
HpyCH4V	TGCA	9 cut(s)	15, 234, 761, 1139, 1409, 1787, 1832, 1904, 1934
HpyF10VI	GCNNNNNNNGC	7 cut(s)	12, 180, 775, 908, 1931, 1940, 2125
HpyF3I	CTNAG	7 cut(s)	574, 903, 1563, 1776, 1821, 1953, 2143
HpySE526I	ACGT	4 cut(s)	150, 859, 1098, 2134
Hsp92II	CATG	7 cut(s)	199, 295, 796, 898, 1437, 1729, 1908
HspAI	GCGC	3 cut(s)	470, 2025, 2057
Ksp22I	TGATCA	1 cut(s)	994
Kzo9I	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
LmnI	GCTCC	4 cut(s)	87, 528, 536, 1945
Lsp1109I	GCAGC	4 cut(s)	1768, 1771, 1813, 1816
LweI	GCATC	3 cut(s)	560, 1568, 1841
MaeI	CTAG	6 cut(s)	419, 843, 1116, 1511, 1872, 2007
MaeII	ACGT	4 cut(s)	150, 859, 1098, 2134
MaeIII	GTNAC	4 cut(s)	915, 1111, 1476, 1678
MalI	GATC	8 cut(s)	417, 514, 996, 1164, 1290, 1347, 1401, 1689
MboI	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
MflI	RGATCY	1 cut(s)	1288
MhlI	GDGCHC	9 cut(s)	8, 71, 491, 533, 856, 1374, 1741, 1997, 2130
MluCI	AATT	5 cut(s)	1025, 1185, 1404, 1424, 2161
MlyI	GAGTC	4 cut(s)	72, 233, 661, 1310
MmeI	TCCRAC	3 cut(s)	423, 1447, 2060
MroXI	GAANNNNTTC	3 cut(s)	53, 591, 1332
MseI	TTAA	8 cut(s)	462, 945, 1359, 1803, 1848, 2051, 2121, 2164
MslI	CAYNNNNRTG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	1802
MspI	CCGG	2 cut(s)	82, 524
MspR9I	CCNGG	6 cut(s)	19, 525, 1122, 1317, 1922, 2014
Mva1269I	GAATGC	2 cut(s)	53, 1936
MvaI	CCWGG	5 cut(s)	19, 1122, 1317, 1922, 2014
MwoI	GCNNNNNNNGC	7 cut(s)	12, 180, 775, 908, 1931, 1940, 2125
NciI	CCSGG	1 cut(s)	525
NcoI	CCATGG	1 cut(s)	195
NdeII	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
NlaIII	CATG	7 cut(s)	199, 295, 796, 898, 1437, 1729, 1908
NlaIV	GGNNCC	4 cut(s)	1442, 1521, 1658, 2034
NmuCI	GTSAC	2 cut(s)	1476, 1678
PaqCI	CACCTGC	2 cut(s)	239, 1889
PcsI	WCGNNNNNNNCGW	1 cut(s)	162
PctI	GAATGC	2 cut(s)	53, 1936
PdmI	GAANNNNTTC	3 cut(s)	53, 591, 1332
PfeI	GAWTC	5 cut(s)	94, 167, 701, 1333, 2086
PkrI	GCNGC	5 cut(s)	136, 1783, 1786, 1828, 1831
PleI	GAGTC	4 cut(s)	72, 232, 660, 1309
PpsI	GAGTC	4 cut(s)	72, 232, 660, 1309
Psp124BI	GAGCTC	3 cut(s)	533, 1374, 2130
Psp1406I	AACGTT	1 cut(s)	1098
Psp6I	CCWGG	5 cut(s)	17, 1120, 1315, 1920, 2012
PspFI	CCCAGC	1 cut(s)	1965
PspGI	CCWGG	5 cut(s)	17, 1120, 1315, 1920, 2012
PspN4I	GGNNCC	4 cut(s)	1442, 1521, 1658, 2034
PspPI	GGNCC	5 cut(s)	21, 729, 1440, 2010, 2033
PstNI	CAGNNNCTG	1 cut(s)	1682
PsuI	RGATCY	1 cut(s)	1288
RsaI	GTAC	6 cut(s)	11, 1295, 1386, 1484, 1515, 1569
RsaNI	GTAC	6 cut(s)	10, 1294, 1385, 1483, 1514, 1568
RseI	CAYNNNNRTG	1 cut(s)	194
SacI	GAGCTC	3 cut(s)	533, 1374, 2130
SaqAI	TTAA	8 cut(s)	462, 945, 1359, 1803, 1848, 2051, 2121, 2164
SatI	GCNGC	5 cut(s)	135, 1782, 1785, 1827, 1830
Sau3AI	GATC	8 cut(s)	415, 512, 994, 1162, 1288, 1345, 1399, 1687
Sau96I	GGNCC	5 cut(s)	21, 729, 1440, 2010, 2033
SchI	GAGTC	4 cut(s)	72, 233, 661, 1310
ScrFI	CCNGG	6 cut(s)	19, 525, 1122, 1317, 1922, 2014
SduI	GDGCHC	9 cut(s)	8, 71, 491, 533, 856, 1374, 1741, 1997, 2130
SfaNI	GCATC	3 cut(s)	560, 1568, 1841
SfcI	CTRYAG	1 cut(s)	1107
SinI	GGWCC	3 cut(s)	729, 1440, 2033
SmiMI	CAYNNNNRTG	1 cut(s)	194
SmlI	CTYRAG	4 cut(s)	1367, 1715, 1757, 1802
SmoI	CTYRAG	4 cut(s)	1367, 1715, 1757, 1802
Sse9I	AATT	5 cut(s)	1025, 1185, 1404, 1424, 2161
SsiI	CCGC	5 cut(s)	85, 115, 135, 1639, 1943
SspMI	CTAG	6 cut(s)	419, 843, 1116, 1511, 1872, 2007
SstI	GAGCTC	3 cut(s)	533, 1374, 2130
StyD4I	CCNGG	6 cut(s)	17, 523, 1120, 1315, 1920, 2012
StyI	CCWWGG	2 cut(s)	195, 1144
TaaI	ACNGT	5 cut(s)	219, 314, 773, 800, 1482
TaiI	ACGT	4 cut(s)	153, 862, 1101, 2137
TaqI	TCGA	6 cut(s)	156, 222, 387, 856, 1462, 1632
TasI	AATT	5 cut(s)	1025, 1185, 1404, 1424, 2161
TatI	WGTACW	3 cut(s)	1384, 1482, 1513
TauI	GCSGC	1 cut(s)	137
TfiI	GAWTC	5 cut(s)	94, 167, 701, 1333, 2086
Tru1I	TTAA	8 cut(s)	462, 945, 1359, 1803, 1848, 2051, 2121, 2164
Tru9I	TTAA	8 cut(s)	462, 945, 1359, 1803, 1848, 2051, 2121, 2164
TscAI	CASTG	6 cut(s)	265, 763, 1197, 1211, 1387, 1687
TseFI	GTSAC	2 cut(s)	1476, 1678
TseI	GCWGC	4 cut(s)	1781, 1784, 1826, 1829
Tsp45I	GTSAC	2 cut(s)	1476, 1678
TspGWI	ACGGA	2 cut(s)	90, 2055
TspRI	CASTG	6 cut(s)	265, 763, 1197, 1211, 1387, 1687
Vha464I	CTTAAG	1 cut(s)	1802
VpaK11BI	GGWCC	3 cut(s)	729, 1440, 2033
XapI	RAATTY	1 cut(s)	1185
XbaI	TCTAGA	1 cut(s)	418
XmnI	GAANNNNTTC	3 cut(s)	53, 591, 1332
XspI	CTAG	6 cut(s)	419, 843, 1116, 1511, 1872, 2007

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.