Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0024243

Physical Location & Seq

Genomic Coordinates Forward (+)

8736177 .. 8736407

Gene Structure 231 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 231 bp

ATGGTTACTAGAAGCCGGGGCGAGATCAGGCATGTGTGCAGTCCTAAAGTGACAAGCTCACCTACAACATCATCCAAGGAATTGAAAAGCACACTGAGCTTCTCGGACAAGGTAATCAGTCCTCGTCTAAGCGAGCTGAGAGGCGACCAAAGTCCTCGGAGTGGCGGAAAAGGACCATTTAGTCCAAGGAGTGGAGAACCGAAATCATCTAACTTAGGGAAGAGTGGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005773 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006820 GO:0006873 GO:0006885 GO:0007275 GO:0008150 GO:0008509 GO:0009987 GO:0010036 GO:0012505 GO:0015075 GO:0016020 GO:0016021 GO:0019725 GO:0022622 GO:0022857 GO:0030003 GO:0030004 GO:0030641 GO:0031224 GO:0031226 GO:0031410 GO:0031982 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044425 GO:0044444 GO:0044459 GO:0044464 GO:0048364 GO:0048731 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051453 GO:0055067 GO:0055080 GO:0055082 GO:0055085 GO:0065007 GO:0065008 GO:0071944 GO:0097708 GO:0098656 GO:0098771 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HCO3_cotransp

Protein Analysis

77

Amino Acids

8.06

Weight (kDa)

10.65

Isoelectric Point (pI)

71.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024243)

Species	Orthologous Gene IDs
malus_domestica	MD13G1146400.v1.1
pyrus_communis	pycom13g12600 pycom16g12450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	180
AccB7I	CCANNNNNTGG	1 cut(s)	191
AciI	CCGC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	161, 191
AgsI	TTSAA	1 cut(s)	85
AluBI	AGCT	3 cut(s)	57, 99, 136
AluI	AGCT	3 cut(s)	57, 99, 136
AspS9I	GGNCC	1 cut(s)	173
AsuC2I	CCSGG	1 cut(s)	17
AsuHPI	GGTGA	1 cut(s)	51
AvaII	GGWCC	1 cut(s)	173
BcnI	CCSGG	1 cut(s)	17
BfaI	CTAG	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	17
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmrFI	CCNGG	1 cut(s)	17
BoxI	GACNNNNGTC	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	17
BsaJI	CCNNGG	4 cut(s)	16, 75, 155, 185
Bsc4I	CCNNNNNNNGG	2 cut(s)	161, 191
BseDI	CCNNGG	4 cut(s)	16, 75, 155, 185
BseGI	GGATG	1 cut(s)	71
BseLI	CCNNNNNNNGG	2 cut(s)	161, 191
BseMII	CTCAG	2 cut(s)	86, 128
BsgI	GTGCAG	1 cut(s)	58
BsiSI	CCGG	1 cut(s)	16
BslI	CCNNNNNNNGG	2 cut(s)	161, 191
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	87, 129
BssECI	CCNNGG	4 cut(s)	16, 75, 155, 185
BssMI	GATC	1 cut(s)	24
BssT1I	CCWWGG	2 cut(s)	75, 185
Bst6I	CTCTTC	1 cut(s)	215
BstC8I	GCNNGC	1 cut(s)	134
BstDEI	CTNAG	4 cut(s)	95, 128, 137, 214
BstF5I	GGATG	1 cut(s)	71
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	1 cut(s)	96
BstNSI	RCATGY	1 cut(s)	35
BstPAI	GACNNNNGTC	1 cut(s)	150
BstSCI	CCNGG	1 cut(s)	15
BtsCI	GGATG	1 cut(s)	71
BtsIMutI	CAGTG	1 cut(s)	92
Cac8I	GCNNGC	1 cut(s)	134
Cfr13I	GGNCC	1 cut(s)	173
CviAII	CATG	1 cut(s)	32
CviJI	RGCY	4 cut(s)	15, 57, 99, 136
CviKI_1	RGCY	4 cut(s)	15, 57, 99, 136
DdeI	CTNAG	4 cut(s)	95, 128, 137, 214
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DrdI	GACNNNNNNGTC	1 cut(s)	180
DseDI	GACNNNNNNGTC	1 cut(s)	180
Eam1104I	CTCTTC	1 cut(s)	215
EarI	CTCTTC	1 cut(s)	215
EciI	GGCGGA	1 cut(s)	180
Eco130I	CCWWGG	2 cut(s)	75, 185
Eco47I	GGWCC	1 cut(s)	173
EcoT14I	CCWWGG	2 cut(s)	75, 185
ErhI	CCWWGG	2 cut(s)	75, 185
FaeI	CATG	1 cut(s)	35
FaiI	YATR	1 cut(s)	33
FatI	CATG	1 cut(s)	31
FokI	GGATG	1 cut(s)	58
FspBI	CTAG	1 cut(s)	9
HapII	CCGG	1 cut(s)	16
Hin1II	CATG	1 cut(s)	35
HpaII	CCGG	1 cut(s)	16
HphI	GGTGA	1 cut(s)	51
Hpy188I	TCNGA	2 cut(s)	106, 159
HpyCH4V	TGCA	1 cut(s)	39
HpyF10VI	GCNNNNNNNGC	1 cut(s)	96
HpyF3I	CTNAG	4 cut(s)	95, 128, 137, 214
Hsp92II	CATG	1 cut(s)	35
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	2 cut(s)	13, 29
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	4, 49
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	3 cut(s)	132, 134, 165
MspI	CCGG	1 cut(s)	16
MspR9I	CCNGG	1 cut(s)	17
MwoI	GCNNNNNNNGC	1 cut(s)	96
NciI	CCSGG	1 cut(s)	17
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	1 cut(s)	35
NmuCI	GTSAC	1 cut(s)	49
NspI	RCATGY	1 cut(s)	35
PflMI	CCANNNNNTGG	1 cut(s)	191
PshAI	GACNNNNGTC	1 cut(s)	150
PspPI	GGNCC	1 cut(s)	173
Sau3AI	GATC	1 cut(s)	24
Sau96I	GGNCC	1 cut(s)	173
ScrFI	CCNGG	1 cut(s)	17
SetI	ASST	5 cut(s)	59, 64, 101, 114, 138
SinI	GGWCC	1 cut(s)	173
Sse9I	AATT	1 cut(s)	80
SsiI	CCGC	1 cut(s)	165
SspMI	CTAG	1 cut(s)	9
StyD4I	CCNGG	1 cut(s)	15
StyI	CCWWGG	2 cut(s)	75, 185
TasI	AATT	1 cut(s)	80
TscAI	CASTG	1 cut(s)	99
TseFI	GTSAC	1 cut(s)	49
Tsp45I	GTSAC	1 cut(s)	49
TspRI	CASTG	1 cut(s)	99
Van91I	CCANNNNNTGG	1 cut(s)	191
VpaK11BI	GGWCC	1 cut(s)	173
XceI	RCATGY	1 cut(s)	35
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.