Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0022327

Physical Location & Seq

Genomic Coordinates Forward (+)

13641383 .. 13642616

Gene Structure 1234 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 420 bp

ATGGTTCGTATGCGGCAGACAAAAGTTTATGTTCATAGAAGTGGTAGAATTGTTAGAGCTTCTGCTGATGGGTGCAGCATTACATTAATTGCACCAAATGAGACCTCCAAATTTACAAGATTATGTGGAAAGATTCCCAGGAGAAATCGAAGAAAAAAAAATTGGTTCGAAAGAAATGCAGAATTGATTGAATTGGTTGTGGACCATGATGATAGGGCTGGTGTGTCACCTTTCCTGCTACATCAATTCGAAGAATTGGCTAAGCAAAAATTTGATGATGGCAGTGACTCCGGAGATAAGAAAAGAAGTAAATTGGTAGTTATTGGTCAGGATTTGCATATTTTGGTATGGTTCTCTACTTCTTCCTTCCATAATGTTTCACTGCACTTGCACTGGATTTGGGTATGGTTCTTGGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0009987 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0031974 GO:0031981 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071704 GO:0090304 GO:0140098 GO:1901360

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

140

Amino Acids

16.27

Weight (kDa)

9.79

Isoelectric Point (pI)

44.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0022327)

Species	Orthologous Gene IDs
malus_domestica	MD02G1229300.v1.1 MD14G1102900.v1.1
pyrus_communis	pycom03g19490 pycom16g17440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	290
AciI	CCGC	1 cut(s)	13
AcsI	RAATTY	2 cut(s)	110, 269
AgsI	TTSAA	1 cut(s)	191
AjnI	CCWGG	1 cut(s)	137
AjuI	GAANNNNNNNTTGG	2 cut(s)	145, 177
AluBI	AGCT	1 cut(s)	59
AluI	AGCT	1 cut(s)	59
Alw26I	GTCTC	1 cut(s)	95
Aor13HI	TCCGGA	1 cut(s)	290
ApeKI	GCWGC	1 cut(s)	75
ApoI	RAATTY	2 cut(s)	110, 269
AseI	ATTAAT	1 cut(s)	86
AspS9I	GGNCC	1 cut(s)	202
AsuHPI	GGTGA	1 cut(s)	219
AsuII	TTCGAA	2 cut(s)	168, 249
AvaII	GGWCC	1 cut(s)	202
BbvI	GCAGC	1 cut(s)	87
BccI	CCATC	2 cut(s)	62, 272
BcgI	CGANNNNNNTGC	2 cut(s)	158, 192
BciT130I	CCWGG	1 cut(s)	139
BcoDI	GTCTC	1 cut(s)	95
BisI	GCNGC	2 cut(s)	14, 76
BlpI	GCTNAGC	1 cut(s)	261
BlsI	GCNGC	2 cut(s)	15, 77
Bme1390I	CCNGG	1 cut(s)	139
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	1 cut(s)	202
BmrFI	CCNGG	1 cut(s)	139
Bpu1102I	GCTNAGC	1 cut(s)	261
Bpu14I	TTCGAA	2 cut(s)	168, 249
BsaI	GGTCTC	1 cut(s)	95
BsaJI	CCNNGG	1 cut(s)	137
BsaWI	WCCGGW	1 cut(s)	290
Bse1I	ACTGG	1 cut(s)	398
BseAI	TCCGGA	1 cut(s)	290
BseBI	CCWGG	1 cut(s)	139
BseDI	CCNNGG	1 cut(s)	137
BseNI	ACTGG	1 cut(s)	398
BseXI	GCAGC	1 cut(s)	87
BsgI	GTGCAG	2 cut(s)	94, 368
BsiSI	CCGG	1 cut(s)	291
BsmAI	GTCTC	1 cut(s)	95
Bso31I	GGTCTC	1 cut(s)	95
Bsp119I	TTCGAA	2 cut(s)	168, 249
Bsp13I	TCCGGA	1 cut(s)	290
Bsp1720I	GCTNAGC	1 cut(s)	261
BspACI	CCGC	1 cut(s)	13
BspEI	TCCGGA	1 cut(s)	290
BspT104I	TTCGAA	2 cut(s)	168, 249
BspTNI	GGTCTC	1 cut(s)	95
BsrI	ACTGG	1 cut(s)	398
BssECI	CCNNGG	1 cut(s)	137
Bst2UI	CCWGG	1 cut(s)	139
BstBI	TTCGAA	2 cut(s)	168, 249
BstDEI	CTNAG	1 cut(s)	261
BstMAI	GTCTC	1 cut(s)	95
BstNI	CCWGG	1 cut(s)	139
BstSCI	CCNGG	1 cut(s)	137
BstV1I	GCAGC	1 cut(s)	87
BtsI	GCAGTG	2 cut(s)	289, 380
BtsIMutI	CAGTG	3 cut(s)	289, 380, 391
Cfr13I	GGNCC	1 cut(s)	202
CviAII	CATG	1 cut(s)	206
CviJI	RGCY	3 cut(s)	59, 218, 260
CviKI_1	RGCY	3 cut(s)	59, 218, 260
DdeI	CTNAG	1 cut(s)	261
Eco31I	GGTCTC	1 cut(s)	95
Eco47I	GGWCC	1 cut(s)	202
EcoRII	CCWGG	1 cut(s)	137
FaeI	CATG	1 cut(s)	209
FaiI	YATR	9 cut(s)	11, 30, 36, 124, 207, 339, 349, 372, 406
FatI	CATG	1 cut(s)	205
Fnu4HI	GCNGC	2 cut(s)	14, 76
Fsp4HI	GCNGC	2 cut(s)	14, 76
GluI	GCNGC	2 cut(s)	14, 76
HapII	CCGG	1 cut(s)	291
Hin1II	CATG	1 cut(s)	209
HinfI	GANTC	2 cut(s)	133, 287
HpaII	CCGG	1 cut(s)	291
HphI	GGTGA	1 cut(s)	219
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	2 cut(s)	291, 329
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	1 cut(s)	376
HpyCH4V	TGCA	6 cut(s)	75, 92, 179, 337, 385, 391
HpyF3I	CTNAG	1 cut(s)	261
Hsp92II	CATG	1 cut(s)	209
Kpn2I	TCCGGA	1 cut(s)	290
LpnPI	CCDG	7 cut(s)	124, 151, 204, 248, 304, 314, 379
Lsp1109I	GCAGC	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	225, 284
MboII	GAAGA	3 cut(s)	162, 263, 354
MlyI	GAGTC	1 cut(s)	281
MnlI	CCTC	1 cut(s)	115
MroI	TCCGGA	1 cut(s)	290
MseI	TTAA	1 cut(s)	86
MslI	CAYNNNNRTG	1 cut(s)	39
MspI	CCGG	1 cut(s)	291
MspR9I	CCNGG	1 cut(s)	139
MvaI	CCWGG	1 cut(s)	139
NlaIII	CATG	1 cut(s)	209
NmuCI	GTSAC	2 cut(s)	225, 284
NspV	TTCGAA	2 cut(s)	168, 249
PfeI	GAWTC	1 cut(s)	133
PkrI	GCNGC	2 cut(s)	15, 77
PleI	GAGTC	1 cut(s)	281
PpsI	GAGTC	1 cut(s)	281
PshBI	ATTAAT	1 cut(s)	86
Psp6I	CCWGG	1 cut(s)	137
PspGI	CCWGG	1 cut(s)	137
PspPI	GGNCC	1 cut(s)	202
RseI	CAYNNNNRTG	1 cut(s)	39
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	2 cut(s)	14, 76
Sau96I	GGNCC	1 cut(s)	202
SchI	GAGTC	1 cut(s)	281
ScrFI	CCNGG	1 cut(s)	139
SetI	ASST	3 cut(s)	61, 107, 232
SfuI	TTCGAA	2 cut(s)	168, 249
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	39
SsiI	CCGC	1 cut(s)	13
StyD4I	CCNGG	1 cut(s)	137
TaqI	TCGA	3 cut(s)	148, 168, 249
TauI	GCSGC	1 cut(s)	16
TfiI	GAWTC	1 cut(s)	133
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	3 cut(s)	289, 387, 398
TseFI	GTSAC	2 cut(s)	225, 284
TseI	GCWGC	1 cut(s)	75
Tsp45I	GTSAC	2 cut(s)	225, 284
TspDTI	ATGAA	1 cut(s)	23
TspRI	CASTG	3 cut(s)	289, 387, 398
VpaK11BI	GGWCC	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	86
XapI	RAATTY	2 cut(s)	110, 269

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.