Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0010711

Physical Location & Seq

Genomic Coordinates Forward (+)

26438959 .. 26442103

Gene Structure 3145 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGATTGCTTAGAGGTCTGCAAGGAGGGCAAGTTCGAAGAAGATCAAGATGAATGTACTCTGGATGGTACAGTTGATATGCATGGCCGCCCTGCAGTCAGATCAAAATCTGGAAGATGGGTTGCTGGAATCATCATACTTTTGAATCAAGGTCTGGCTACCCTAGCATTCTTCGGAGTCGGGGTGAACTTGGTCTTATACTTAACAAGGGTGTTGCAACAAGACAATGCGACAGCTGCTAACAACGTGAGCAAATGGACTGGAACAGTTTACATCTTCTCTCTTGTTGGTGCTTTCCTTAGTGATTCATATTGGGGAAGATACAAAACTTGTTCTATCTTTCAACTCATCTTTGTCATCGGTCTGGTATCGTTGTCACTGTCATCGCAGCTCTTCTTGCTCAACCCTAAAGGTTGTGGGAGCAAAGAAAATCCATGTGGATCTCATTCAAGCTGGAAAATTTGGCTATTCTACCTCTCCACCTACCTAATTGCCCTAGGATACGGTGGATACCAACCAAACATTGCAACTTTTGGAGCCGATCAGTACGATGAAGAGGACAGCAAGGAAGGGCTCTCAAAGGTGGCGTTTTTCAGCTACTTCTACCTGGCTATGAACCTTGGTTCCCTTTTCTCCAACACCATATTAGGTTTCTTTGAGGATGAAGGAATTTGGGCTATTGGGTTCTGGGCATCTGCAGCATCAGCATTTGCAGGATTGGTCTTGTTCCTTGGTGGGACTGCTAGGTACAGGCACTTCAAACCAAATGGCAACCCACTCTCGAGGTTTTGCCAAGTCTTAGTTGCTGCCATGAAGAAATGCAGGGTGCATATGCCACAAGGTGGAGAGGACTTGTACGATGAGAGTAACAAGGAGTCTTCAAATAGCAACCGAAAGATCCTCTACACCCATGGATTCAAGTTCTTGGACAGGGCTGCATATATCTCATCAAGAGATTTAGATTACAAGAAGCAGGGCATCCGCAGCCCATGGCATCTCTGCCCGATCGATCACAAGTGGAAGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005451 GO:0005575 GO:0005623 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006813 GO:0006820 GO:0007275 GO:0007568 GO:0008150 GO:0008324 GO:0008509 GO:0009987 GO:0010035 GO:0010150 GO:0010167 GO:0015075 GO:0015077 GO:0015078 GO:0015079 GO:0015103 GO:0015112 GO:0015291 GO:0015297 GO:0015298 GO:0015299 GO:0015318 GO:0015386 GO:0015491 GO:0015672 GO:0015698 GO:0015706 GO:0016020 GO:0022804 GO:0022821 GO:0022857 GO:0022890 GO:0030001 GO:0032501 GO:0032502 GO:0034220 GO:0042221 GO:0042592 GO:0044464 GO:0046873 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0048878 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0055085 GO:0065007 GO:0065008 GO:0071705 GO:0071804 GO:0071805 GO:0071944 GO:0090693 GO:0098655 GO:0098656 GO:0098660 GO:0098662 GO:0098771 GO:0099402 GO:0099516 GO:1901698 GO:1901700 GO:1902600

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PTR2

Protein Analysis

343

Amino Acids

38.27

Weight (kDa)

8.27

Isoelectric Point (pI)

34.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MFS_1	PF07690	47 - 255	4.6e-11	Major Facilitator Superfamily
PTR2	PF00854	108 - 304	1.8e-37	POT family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010711)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G32450
fragaria_vesca	FvH4_5g21490
malus_domestica	MD06G1029400.v1.1 MD16G1277800.v1.1
prunus_persica	Prupe.5G042300_v2.0.a1
pyrus_communis	pycom06g02370 pycom16g24760 pycom16g24770
rosa_chinensis	RchiOBHm_Chr7g0208891
rosa_laevigata	RLG00000003186
rosa_multiflora	Rmu_sc0000532.1_g000007 Rmu_sc0006433.1_g000001 Rmu_sc0016359.1_g000003 Rmu_sc0030959.1_g000001
rosa_roxburghii	Rroxscaffold_3G00250070
rosa_rugosa	Rorug07G0107200
rosa_samantha	Rh7AG242200 Rh7BG237000 Rh7DG248100
rosa_wichuraiana	Rw7G020510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	842
AciI	CCGC	2 cut(s)	88, 982
AclWI	GGATC	2 cut(s)	448, 892
AcoI	YGGCCR	1 cut(s)	85
AcsI	RAATTY	2 cut(s)	459, 669
AdeI	CACNNNGTG	1 cut(s)	842
AfaI	GTAC	5 cut(s)	58, 70, 548, 749, 857
AfiI	CCNNNNNNNGG	1 cut(s)	842
AgsI	TTSAA	6 cut(s)	145, 344, 450, 760, 882, 919
AjnI	CCWGG	1 cut(s)	606
AloI	GAACNNNNNNTCC	4 cut(s)	17, 49, 608, 640
AluBI	AGCT	4 cut(s)	236, 391, 453, 597
AluI	AGCT	4 cut(s)	236, 391, 453, 597
AlwI	GGATC	2 cut(s)	448, 892
Ama87I	CYCGRG	1 cut(s)	781
AoxI	GGCC	1 cut(s)	85
ApeKI	GCWGC	6 cut(s)	236, 388, 698, 806, 935, 984
ApoI	RAATTY	2 cut(s)	459, 669
AspA2I	CCTAGG	1 cut(s)	496
AsuHPI	GGTGA	1 cut(s)	196
AsuII	TTCGAA	1 cut(s)	36
AvaI	CYCGRG	1 cut(s)	781
AvrII	CCTAGG	1 cut(s)	496
BanII	GRGCYC	1 cut(s)	576
BarI	GAAGNNNNNNTAC	2 cut(s)	740, 772
BbsI	GAAGAC	1 cut(s)	870
BbvI	GCAGC	6 cut(s)	223, 400, 710, 793, 922, 996
BccI	CCATC	2 cut(s)	59, 111
BciT130I	CCWGG	1 cut(s)	608
BciVI	GTATCC	2 cut(s)	494, 503
BfaI	CTAG	3 cut(s)	164, 497, 744
BfmI	CTRYAG	2 cut(s)	93, 696
BfuI	GTATCC	2 cut(s)	494, 503
BisI	GCNGC	7 cut(s)	88, 237, 389, 699, 807, 936, 985
BlnI	CCTAGG	1 cut(s)	496
BlsI	GCNGC	7 cut(s)	89, 238, 390, 700, 808, 937, 986
Bme1390I	CCNGG	1 cut(s)	608
BmeT110I	CYCGRG	1 cut(s)	781
BmiI	GGNNCC	2 cut(s)	538, 625
BmrFI	CCNGG	1 cut(s)	608
BmsI	GCATC	4 cut(s)	701, 710, 987, 1003
BpiI	GAAGAC	1 cut(s)	870
Bpu14I	TTCGAA	1 cut(s)	36
Bsa29I	ATCGAT	1 cut(s)	1008
BsaBI	GATNNNNATC	1 cut(s)	106
BsaJI	CCNNGG	5 cut(s)	496, 619, 730, 910, 989
BsaXI	ACNNNNNCTCC	4 cut(s)	17, 47, 168, 198
Bsc4I	CCNNNNNNNGG	1 cut(s)	842
Bse1I	ACTGG	1 cut(s)	265
Bse3DI	GCAATG	1 cut(s)	522
Bse8I	GATNNNNATC	1 cut(s)	106
BseBI	CCWGG	1 cut(s)	608
BseCI	ATCGAT	1 cut(s)	1008
BseDI	CCNNGG	5 cut(s)	496, 619, 730, 910, 989
BseGI	GGATG	3 cut(s)	70, 667, 978
BseJI	GATNNNNATC	1 cut(s)	106
BseLI	CCNNNNNNNGG	1 cut(s)	842
BseMI	GCAATG	1 cut(s)	522
BseNI	ACTGG	1 cut(s)	265
BseXI	GCAGC	6 cut(s)	223, 400, 710, 793, 922, 996
Bsh1285I	CGRYCG	1 cut(s)	1008
BshFI	GGCC	1 cut(s)	87
BshVI	ATCGAT	1 cut(s)	1008
BsiEI	CGRYCG	1 cut(s)	1008
BsiHKCI	CYCGRG	1 cut(s)	781
BslFI	GGGAC	1 cut(s)	751
BslI	CCNNNNNNNGG	1 cut(s)	842
BsmFI	GGGAC	1 cut(s)	751
BsmI	GAATGC	1 cut(s)	167
BsnI	GGCC	1 cut(s)	87
BsoBI	CYCGRG	1 cut(s)	781
Bsp119I	TTCGAA	1 cut(s)	36
Bsp1286I	GDGCHC	1 cut(s)	576
Bsp143I	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
Bsp19I	CCATGG	2 cut(s)	910, 989
BspACI	CCGC	2 cut(s)	88, 982
BspANI	GGCC	1 cut(s)	87
BspDI	ATCGAT	1 cut(s)	1008
BspLI	GGNNCC	2 cut(s)	538, 625
BspMAI	CTGCAG	2 cut(s)	97, 700
BspPI	GGATC	2 cut(s)	448, 892
BspQI	GCTCTTC	1 cut(s)	398
BspT104I	TTCGAA	1 cut(s)	36
BsrDI	GCAATG	1 cut(s)	522
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	5 cut(s)	496, 619, 730, 910, 989
BssMI	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
BssT1I	CCWWGG	5 cut(s)	496, 619, 730, 910, 989
Bst2UI	CCWGG	1 cut(s)	608
Bst4CI	ACNGT	4 cut(s)	73, 268, 381, 506
Bst6I	CTCTTC	2 cut(s)	398, 549
BstBI	TTCGAA	1 cut(s)	36
BstDEI	CTNAG	3 cut(s)	10, 299, 799
BstDSI	CCRYGG	2 cut(s)	910, 989
BstF5I	GGATG	3 cut(s)	70, 667, 978
BstKTI	GATC	7 cut(s)	46, 104, 443, 544, 900, 1008, 1012
BstMBI	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
BstMCI	CGRYCG	1 cut(s)	1008
BstMWI	GCNNNNNNNGC	7 cut(s)	27, 164, 236, 397, 698, 704, 984
BstNI	CCWGG	1 cut(s)	608
BstSCI	CCNGG	1 cut(s)	606
BstSFI	CTRYAG	2 cut(s)	93, 696
BstV1I	GCAGC	6 cut(s)	223, 400, 710, 793, 922, 996
BstV2I	GAAGAC	1 cut(s)	870
BstX2I	RGATCY	2 cut(s)	440, 897
BstYI	RGATCY	2 cut(s)	440, 897
Bsu15I	ATCGAT	1 cut(s)	1008
BsuI	GTATCC	2 cut(s)	494, 503
BsuRI	GGCC	1 cut(s)	87
BsuTUI	ATCGAT	1 cut(s)	1008
BtgI	CCRYGG	2 cut(s)	910, 989
BtgZI	GCGATG	1 cut(s)	369
BtsCI	GGATG	3 cut(s)	70, 667, 978
BtsIMutI	CAGTG	1 cut(s)	377
ClaI	ATCGAT	1 cut(s)	1008
Csp6I	GTAC	5 cut(s)	57, 69, 547, 748, 856
CviAII	CATG	5 cut(s)	83, 435, 811, 911, 990
CviQI	GTAC	5 cut(s)	57, 69, 547, 748, 856
DdeI	CTNAG	3 cut(s)	10, 299, 799
DpnI	GATC	7 cut(s)	45, 103, 442, 543, 899, 1007, 1011
DpnII	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
DraIII	CACNNNGTG	1 cut(s)	842
EaeI	YGGCCR	1 cut(s)	85
Eam1104I	CTCTTC	2 cut(s)	398, 549
EarI	CTCTTC	2 cut(s)	398, 549
Eco130I	CCWWGG	5 cut(s)	496, 619, 730, 910, 989
Eco24I	GRGCYC	1 cut(s)	576
Eco88I	CYCGRG	1 cut(s)	781
EcoRII	CCWGG	1 cut(s)	606
EcoT14I	CCWWGG	5 cut(s)	496, 619, 730, 910, 989
EcoT22I	ATGCAT	1 cut(s)	84
EcoT38I	GRGCYC	1 cut(s)	576
ErhI	CCWWGG	5 cut(s)	496, 619, 730, 910, 989
FaeI	CATG	5 cut(s)	86, 438, 814, 914, 993
FaqI	GGGAC	1 cut(s)	751
FatI	CATG	5 cut(s)	82, 434, 810, 910, 989
FauNDI	CATATG	1 cut(s)	831
Fnu4HI	GCNGC	7 cut(s)	88, 237, 389, 699, 807, 936, 985
FokI	GGATG	3 cut(s)	77, 674, 965
FriOI	GRGCYC	1 cut(s)	576
Fsp4HI	GCNGC	7 cut(s)	88, 237, 389, 699, 807, 936, 985
FspBI	CTAG	3 cut(s)	164, 497, 744
GluI	GCNGC	7 cut(s)	88, 237, 389, 699, 807, 936, 985
HaeIII	GGCC	1 cut(s)	87
Hin1II	CATG	5 cut(s)	86, 438, 814, 914, 993
HinfI	GANTC	6 cut(s)	129, 145, 177, 305, 875, 915
HphI	GGTGA	1 cut(s)	196
Hpy166II	GTNNAC	2 cut(s)	187, 271
Hpy188I	TCNGA	2 cut(s)	101, 176
Hpy188III	TCNNGA	5 cut(s)	47, 62, 111, 781, 951
Hpy8I	GTNNAC	2 cut(s)	187, 271
HpyAV	CCTTC	2 cut(s)	563, 659
HpyCH4III	ACNGT	4 cut(s)	73, 268, 381, 506
HpyCH4IV	ACGT	1 cut(s)	246
HpyF10VI	GCNNNNNNNGC	7 cut(s)	27, 164, 236, 397, 698, 704, 984
HpyF3I	CTNAG	3 cut(s)	10, 299, 799
HpySE526I	ACGT	1 cut(s)	246
Hsp92II	CATG	5 cut(s)	86, 438, 814, 914, 993
Kzo9I	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
LguI	GCTCTTC	1 cut(s)	398
LmnI	GCTCC	2 cut(s)	420, 536
Lsp1109I	GCAGC	6 cut(s)	223, 400, 710, 793, 922, 996
LweI	GCATC	4 cut(s)	701, 710, 987, 1003
MaeI	CTAG	3 cut(s)	164, 497, 744
MaeII	ACGT	1 cut(s)	246
MaeIII	GTNAC	2 cut(s)	375, 866
MalI	GATC	7 cut(s)	45, 103, 442, 543, 899, 1007, 1011
MboI	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
MflI	RGATCY	2 cut(s)	440, 897
MhlI	GDGCHC	1 cut(s)	576
MluCI	AATT	3 cut(s)	459, 489, 669
MlyI	GAGTC	2 cut(s)	186, 884
MmeI	TCCRAC	1 cut(s)	660
MnlI	CCTC	8 cut(s)	7, 19, 485, 550, 652, 777, 841, 911
Mph1103I	ATGCAT	1 cut(s)	84
MseI	TTAA	1 cut(s)	203
MspA1I	CMGCKG	1 cut(s)	236
MspR9I	CCNGG	1 cut(s)	608
Mva1269I	GAATGC	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	608
MwoI	GCNNNNNNNGC	7 cut(s)	27, 164, 236, 397, 698, 704, 984
NcoI	CCATGG	2 cut(s)	910, 989
NdeI	CATATG	1 cut(s)	831
NdeII	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
NlaIII	CATG	5 cut(s)	86, 438, 814, 914, 993
NlaIV	GGNNCC	2 cut(s)	538, 625
NmuCI	GTSAC	1 cut(s)	375
NsiI	ATGCAT	1 cut(s)	84
NspV	TTCGAA	1 cut(s)	36
PaeR7I	CTCGAG	1 cut(s)	781
PciSI	GCTCTTC	1 cut(s)	398
PctI	GAATGC	1 cut(s)	167
PfeI	GAWTC	4 cut(s)	129, 145, 305, 915
PflMI	CCANNNNNTGG	1 cut(s)	842
PkrI	GCNGC	7 cut(s)	89, 238, 390, 700, 808, 937, 986
Ple19I	CGATCG	1 cut(s)	1008
PleI	GAGTC	2 cut(s)	185, 883
PpsI	GAGTC	2 cut(s)	185, 883
Psp6I	CCWGG	1 cut(s)	606
PspGI	CCWGG	1 cut(s)	606
PspN4I	GGNNCC	2 cut(s)	538, 625
PstI	CTGCAG	2 cut(s)	97, 700
PsuI	RGATCY	2 cut(s)	440, 897
PvuI	CGATCG	1 cut(s)	1008
PvuII	CAGCTG	1 cut(s)	236
RsaI	GTAC	5 cut(s)	58, 70, 548, 749, 857
RsaNI	GTAC	5 cut(s)	57, 69, 547, 748, 856
SapI	GCTCTTC	1 cut(s)	398
SaqAI	TTAA	1 cut(s)	203
SatI	GCNGC	7 cut(s)	88, 237, 389, 699, 807, 936, 985
Sau3AI	GATC	7 cut(s)	43, 101, 440, 541, 897, 1005, 1009
SchI	GAGTC	2 cut(s)	186, 884
ScrFI	CCNGG	1 cut(s)	608
SduI	GDGCHC	1 cut(s)	576
SfaNI	GCATC	4 cut(s)	701, 710, 987, 1003
SfcI	CTRYAG	2 cut(s)	93, 696
Sfr274I	CTCGAG	1 cut(s)	781
SfuI	TTCGAA	1 cut(s)	36
SlaI	CTCGAG	1 cut(s)	781
SmlI	CTYRAG	1 cut(s)	781
SmoI	CTYRAG	1 cut(s)	781
Sse9I	AATT	3 cut(s)	459, 489, 669
SsiI	CCGC	2 cut(s)	88, 982
SspMI	CTAG	3 cut(s)	164, 497, 744
StyD4I	CCNGG	1 cut(s)	606
StyI	CCWWGG	5 cut(s)	496, 619, 730, 910, 989
TaaI	ACNGT	4 cut(s)	73, 268, 381, 506
TaiI	ACGT	1 cut(s)	249
TaqI	TCGA	3 cut(s)	36, 782, 1008
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	3 cut(s)	459, 489, 669
TatI	WGTACW	1 cut(s)	56
TauI	GCSGC	1 cut(s)	90
TfiI	GAWTC	4 cut(s)	129, 145, 305, 915
Tru1I	TTAA	1 cut(s)	203
Tru9I	TTAA	1 cut(s)	203
TscAI	CASTG	1 cut(s)	384
TseFI	GTSAC	1 cut(s)	375
TseI	GCWGC	6 cut(s)	236, 388, 698, 806, 935, 984
Tsp45I	GTSAC	1 cut(s)	375
TspDTI	ATGAA	6 cut(s)	66, 297, 567, 629, 678, 827
TspRI	CASTG	1 cut(s)	384
Van91I	CCANNNNNTGG	1 cut(s)	842
XapI	RAATTY	2 cut(s)	459, 669
XhoI	CTCGAG	1 cut(s)	781
XmaJI	CCTAGG	1 cut(s)	496
XspI	CTAG	3 cut(s)	164, 497, 744
Zsp2I	ATGCAT	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.