pycom17g02690

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0022259
Physical Location & Seq
Forward (+)
1812579 .. 1814832
2254 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 873 bp
ATGGATCCTAAAGTAGGAGCTCAACTATTGCTGGCTATCCTATTTTACAATAACATATTCACTAGAAAAGATATAAGTCGCTGTGGTATGTTGCCCAAACTTTTGACAACGCTTCTAGCACCTGCTTCACATTCTATGATGATTCCTCTTGTTGTTCAGACTATCTTGCCAATGCTTCAGAAAGATGCTAAACCAACTTTGTATGCGACAGCCATTCGTTTACCTTGCCAGACTTGGGAGACCAATGACCGTGCCTTTGGGAGTTTGCAGGGAGTGTTGCTTCCAAAGTTGCTCACTGAATTAAAGTCTGAGAGAGACATATGCATCAGTATGGCCGCATCAATTCGGGATGTTTGCAGAAAAAATCCTGATAGTGGTGTGGACCTCATCCTGTCTGTTTCGGCTTGCATTGAGAACAAAGATCGTATCATTCAAGCTCTTGGTTTTCAAAGTCTTGCCCACCTTTGTGAAGCTGACGTAATTGATTTTTATACAGCCAGGGACGTCATCACAAAGCATGTTCTGGATTACCGTGCAGATTCAGTTCTTGCTCATAGCGTTTGCCTTCTTCTGAGGTGGGGTTCAATGGATGCCGAAGCACATCCTGAAGTCTCAAAGAATGTCTTGCAAATCCTGTGGAGTGTTAGCTTGTCTGCTCACCCTGGTCTGCAGTCACAATGGGAAAAGGCAAGGGCCTCTTCCTTAGAGGCCTTAGCACAATATAAGATATCGTATGTTGAACAAAACGTTCAAGATTTCAAGAACATGAGCACAGAGTTACTTTTCTCTGAAGCAAATATTACTGTACTCAGGGCTTTGGAAGAACTTCAAGTCATGGTCATAACTTACGAGCATCTACAAGGCGAAGATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF3730

Protein Analysis

291

Amino Acids

32.41

Weight (kDa)

5.67

Isoelectric Point (pI)

41.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3730 PF12530 27 - 238 3.5e-56 Focadhesin/RST1, DUF3730
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0022259)

Species Orthologous Gene IDs
fragaria_vesca FvH4_6g51540 FvH4_6g51560
pyrus_communis pycom17g02690
rosa_samantha Rh2AG643700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 130
AatII GACGTC 1 cut(s) 507
Acc36I ACCTGC 1 cut(s) 130
AciI CCGC 1 cut(s) 336
AclI AACGTT 1 cut(s) 747
AclWI GGATC 1 cut(s) 12
AcoI YGGCCR 1 cut(s) 333
AcuI CTGAAG 3 cut(s) 161, 627, 810
AcyI GRCGYC 1 cut(s) 504
AfaI GTAC 1 cut(s) 807
AfiI CCNNNNNNNGG 3 cut(s) 14, 235, 374
AgsI TTSAA 7 cut(s) 434, 449, 585, 740, 752, 760, 830
AjnI CCWGG 2 cut(s) 497, 661
AleI CACNNNNGTG 1 cut(s) 465
AluBI AGCT 4 cut(s) 20, 437, 473, 648
AluI AGCT 4 cut(s) 20, 437, 473, 648
Alw21I GWGCWC 2 cut(s) 22, 773
Alw26I GTCTC 3 cut(s) 233, 309, 616
AlwI GGATC 1 cut(s) 12
AoxI GGCC 3 cut(s) 333, 693, 708
ArsI GACNNNNNNTTYG 2 cut(s) 239, 271
Asp700I GAANNNNTTC 1 cut(s) 825
AspS9I GGNCC 2 cut(s) 382, 693
AsuHPI GGTGA 1 cut(s) 650
AvaII GGWCC 1 cut(s) 382
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 22
Bbv12I GWGCWC 2 cut(s) 22, 773
BciT130I CCWGG 2 cut(s) 499, 663
BcoDI GTCTC 3 cut(s) 233, 309, 616
BfaI CTAG 2 cut(s) 63, 116
BfmI CTRYAG 1 cut(s) 668
BfuAI ACCTGC 1 cut(s) 130
BisI GCNGC 1 cut(s) 336
BlsI GCNGC 1 cut(s) 337
Bme1390I CCNGG 2 cut(s) 499, 663
Bme18I GGWCC 1 cut(s) 382
BmgT120I GGNCC 2 cut(s) 382, 693
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 499, 663
BmsI GCATC 5 cut(s) 175, 333, 347, 580, 862
Bpu10I CCTNAGC 1 cut(s) 712
BsaHI GRCGYC 1 cut(s) 504
BsaI GGTCTC 1 cut(s) 233
BsaJI CCNNGG 2 cut(s) 498, 661
Bsc4I CCNNNNNNNGG 3 cut(s) 14, 235, 374
BseBI CCWGG 2 cut(s) 499, 663
BseDI CCNNGG 2 cut(s) 498, 661
BseGI GGATG 4 cut(s) 355, 387, 595, 601
BseLI CCNNNNNNNGG 3 cut(s) 14, 235, 374
BseMII CTCAG 3 cut(s) 300, 563, 823
BsgI GTGCAG 1 cut(s) 555
BshFI GGCC 3 cut(s) 335, 695, 710
BsiHKAI GWGCWC 2 cut(s) 22, 773
BslFI GGGAC 1 cut(s) 515
BslI CCNNNNNNNGG 3 cut(s) 14, 235, 374
BsmAI GTCTC 3 cut(s) 233, 309, 616
BsmFI GGGAC 1 cut(s) 515
BsnI GGCC 3 cut(s) 335, 695, 710
Bso31I GGTCTC 1 cut(s) 233
Bsp1286I GDGCHC 2 cut(s) 22, 773
Bsp143I GATC 2 cut(s) 4, 421
BspACI CCGC 1 cut(s) 336
BspANI GGCC 3 cut(s) 335, 695, 710
BspCNI CTCAG 3 cut(s) 301, 564, 822
BspLI GGNNCC 1 cut(s) 6
BspMAI CTGCAG 1 cut(s) 672
BspMI ACCTGC 1 cut(s) 130
BspPI GGATC 1 cut(s) 12
BspTNI GGTCTC 1 cut(s) 233
BssECI CCNNGG 2 cut(s) 498, 661
BssMI GATC 2 cut(s) 4, 421
BssNI GRCGYC 1 cut(s) 504
Bst2UI CCWGG 2 cut(s) 499, 663
Bst4CI ACNGT 3 cut(s) 251, 533, 805
Bst6I CTCTTC 1 cut(s) 703
BstACI GRCGYC 1 cut(s) 504
BstC8I GCNNGC 2 cut(s) 33, 406
BstDEI CTNAG 5 cut(s) 309, 572, 703, 712, 809
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 355, 387, 595, 601
BstKTI GATC 2 cut(s) 7, 424
BstMAI GTCTC 3 cut(s) 233, 309, 616
BstMBI GATC 2 cut(s) 4, 421
BstNI CCWGG 2 cut(s) 499, 663
BstNSI RCATGY 1 cut(s) 521
BstSCI CCNGG 2 cut(s) 497, 661
BstSFI CTRYAG 1 cut(s) 668
BstX2I RGATCY 1 cut(s) 4
BstYI RGATCY 1 cut(s) 4
BsuRI GGCC 3 cut(s) 335, 695, 710
BtsCI GGATG 4 cut(s) 355, 387, 595, 601
BtsIMutI CAGTG 1 cut(s) 294
BveI ACCTGC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 33, 406
Cfr13I GGNCC 2 cut(s) 382, 693
Csp6I GTAC 1 cut(s) 806
CspCI CAANNNNNGTGG 2 cut(s) 617, 652
CviAII CATG 3 cut(s) 518, 766, 835
CviQI GTAC 1 cut(s) 806
DdeI CTNAG 5 cut(s) 309, 572, 703, 712, 809
DpnI GATC 2 cut(s) 6, 423
DpnII GATC 2 cut(s) 4, 421
EaeI YGGCCR 1 cut(s) 333
Eam1104I CTCTTC 1 cut(s) 703
EarI CTCTTC 1 cut(s) 703
Ecl136II GAGCTC 1 cut(s) 20
Eco147I AGGCCT 1 cut(s) 710
Eco24I GRGCYC 1 cut(s) 22
Eco31I GGTCTC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 729
Eco47I GGWCC 1 cut(s) 382
Eco53kI GAGCTC 1 cut(s) 20
Eco57I CTGAAG 3 cut(s) 161, 627, 810
EcoICRI GAGCTC 1 cut(s) 20
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoO109I RGGNCCY 1 cut(s) 693
EcoRII CCWGG 2 cut(s) 497, 661
EcoRV GATATC 1 cut(s) 729
EcoT22I ATGCAT 1 cut(s) 326
EcoT38I GRGCYC 1 cut(s) 22
FaeI CATG 3 cut(s) 521, 769, 838
FalI AAGNNNNNCTT 4 cut(s) 608, 640, 682, 714
FaqI GGGAC 1 cut(s) 515
FatI CATG 3 cut(s) 517, 765, 834
FauNDI CATATG 1 cut(s) 320
Fnu4HI GCNGC 1 cut(s) 336
FokI GGATG 4 cut(s) 362, 374, 588, 602
FriOI GRGCYC 1 cut(s) 22
Fsp4HI GCNGC 1 cut(s) 336
FspBI CTAG 2 cut(s) 63, 116
GluI GCNGC 1 cut(s) 336
HaeIII GGCC 3 cut(s) 335, 695, 710
Hin1I GRCGYC 1 cut(s) 504
Hin1II CATG 3 cut(s) 521, 769, 838
HinfI GANTC 2 cut(s) 142, 539
HphI GGTGA 1 cut(s) 650
Hpy166II GTNNAC 2 cut(s) 221, 382
Hpy188I TCNGA 5 cut(s) 159, 180, 310, 573, 790
Hpy188III TCNNGA 6 cut(s) 347, 368, 524, 605, 752, 760
Hpy8I GTNNAC 2 cut(s) 221, 382
HpyAV CCTTC 1 cut(s) 575
HpyCH4III ACNGT 3 cut(s) 251, 533, 805
HpyCH4IV ACGT 3 cut(s) 477, 504, 747
HpyCH4V TGCA 7 cut(s) 268, 324, 357, 408, 536, 628, 670
HpyF3I CTNAG 5 cut(s) 309, 572, 703, 712, 809
HpySE526I ACGT 3 cut(s) 477, 504, 747
Hsp92I GRCGYC 1 cut(s) 504
Hsp92II CATG 3 cut(s) 521, 769, 838
Kzo9I GATC 2 cut(s) 4, 421
LmnI GCTCC 1 cut(s) 17
LweI GCATC 5 cut(s) 175, 333, 347, 580, 862
MaeI CTAG 2 cut(s) 63, 116
MaeII ACGT 3 cut(s) 477, 504, 747
MaeIII GTNAC 2 cut(s) 672, 777
MalI GATC 2 cut(s) 6, 423
MboI GATC 2 cut(s) 4, 421
MboII GAAGA 3 cut(s) 560, 690, 833
MflI RGATCY 1 cut(s) 4
MhlI GDGCHC 2 cut(s) 22, 773
MluCI AATT 3 cut(s) 299, 342, 480
MnlI CCTC 5 cut(s) 156, 395, 567, 700, 706
Mph1103I ATGCAT 1 cut(s) 326
MroXI GAANNNNTTC 1 cut(s) 825
MseI TTAA 1 cut(s) 302
MslI CAYNNNNRTG 2 cut(s) 329, 465
MspR9I CCNGG 2 cut(s) 499, 663
MvaI CCWGG 2 cut(s) 499, 663
NdeI CATATG 1 cut(s) 320
NdeII GATC 2 cut(s) 4, 421
NlaIII CATG 3 cut(s) 521, 769, 838
NlaIV GGNNCC 1 cut(s) 6
NmuCI GTSAC 1 cut(s) 672
NsiI ATGCAT 1 cut(s) 326
NspI RCATGY 1 cut(s) 521
OliI CACNNNNGTG 1 cut(s) 465
PaqCI CACCTGC 1 cut(s) 130
PceI AGGCCT 1 cut(s) 710
PdmI GAANNNNTTC 1 cut(s) 825
PfeI GAWTC 2 cut(s) 142, 539
PkrI GCNGC 1 cut(s) 337
Psp124BI GAGCTC 1 cut(s) 22
Psp1406I AACGTT 1 cut(s) 747
Psp6I CCWGG 2 cut(s) 497, 661
PspGI CCWGG 2 cut(s) 497, 661
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 2 cut(s) 382, 693
PstI CTGCAG 1 cut(s) 672
PsuI RGATCY 1 cut(s) 4
RsaI GTAC 1 cut(s) 807
RsaNI GTAC 1 cut(s) 806
RseI CAYNNNNRTG 2 cut(s) 329, 465
SacI GAGCTC 1 cut(s) 22
SaqAI TTAA 1 cut(s) 302
SatI GCNGC 1 cut(s) 336
Sau3AI GATC 2 cut(s) 4, 421
Sau96I GGNCC 2 cut(s) 382, 693
ScrFI CCNGG 2 cut(s) 499, 663
SduI GDGCHC 2 cut(s) 22, 773
SfaNI GCATC 5 cut(s) 175, 333, 347, 580, 862
SfcI CTRYAG 1 cut(s) 668
SinI GGWCC 1 cut(s) 382
SmiMI CAYNNNNRTG 2 cut(s) 329, 465
Sse9I AATT 3 cut(s) 299, 342, 480
SseBI AGGCCT 1 cut(s) 710
SsiI CCGC 1 cut(s) 336
SspI AATATT 1 cut(s) 799
SspMI CTAG 2 cut(s) 63, 116
SstI GAGCTC 1 cut(s) 22
StuI AGGCCT 1 cut(s) 710
StyD4I CCNGG 2 cut(s) 497, 661
TaaI ACNGT 3 cut(s) 251, 533, 805
TaiI ACGT 3 cut(s) 480, 507, 750
TasI AATT 3 cut(s) 299, 342, 480
TatI WGTACW 1 cut(s) 805
TauI GCSGC 1 cut(s) 338
TfiI GAWTC 2 cut(s) 142, 539
Tru1I TTAA 1 cut(s) 302
Tru9I TTAA 1 cut(s) 302
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 1 cut(s) 672
Tsp45I GTSAC 1 cut(s) 672
TspRI CASTG 1 cut(s) 301
VpaK11BI GGWCC 1 cut(s) 382
XagI CCTNNNNNAGG 1 cut(s) 12
XceI RCATGY 1 cut(s) 521
XmnI GAANNNNTTC 1 cut(s) 825
XspI CTAG 2 cut(s) 63, 116
ZraI GACGTC 1 cut(s) 505
Zsp2I ATGCAT 1 cut(s) 326
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.