Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0011476

Physical Location & Seq

Genomic Coordinates Forward (+)

4990897 .. 4992424

Gene Structure 1528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g06920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAAGCCGGGTTACAGGACCGCTTTGTTTGAATCAGACGGTCCTTTGGATGAGGATGTTTTGAGGCATTTCGAGAAGGAGGTGAAGGATAAGGTCAAAATTGCTCGGTTAATGATTGGGGAGTCAAAGGAGAATTATGATAATCAGCTCAAGATTCAGAAGTTGAAGGATACCATTTTTGCTGTTAATGAGTTGCTTATAAAGGCAAAGAAGAATGGGGCATTTGCAAGCTCGATTGCTGCAAAATCGATACCAAAAAGTTTGCATTGTTTGGCCATGAGGCTTGTTGAGGAAAGAATTTCACACCCGGAGAAGTACAAGGAAGAGGAACCAAGCCCCGAATTTGAGGACCCAAGTTTGTACCATTATGCAATTTTTTCAGATAATGTCATCGCTGTCTCAGTTGTGGTACGATCTGTGGTGAATAATTCCAATGAACCGTGGAAACATGTCTTCCATGTTGTTACAGATAGGATGAATCTTGCACCGATGAAGGTATGGTTTAAGATGAGGCCTGTGGAAAGGGGTGCATATGTTGAGGTGAAGGCAGTAGAAGATTTTACTTTCTTGAACTCTTCATATGTGCCAGTCTTGAGGCAACTTGAGTCAGCAAAGTTGCAGAAGTTCTACTTTGAGAATCGGGCAGAGAATGCTACCAAGGATACACAAAACATGAAATATAGAAACCCCAAGTACTTGTCAATGTTGAATCACCTTCGGTTTTATTTGCCGGAGATGTATCCCAAACTGCACAAAATTCTCTCTTTGGATGATGATGTTGTGGTTCAAAAGGACTTGACAGGATTATGGAAGATCGATTTGGACGGGAAGGTGAATGGAGCTGTTGAGACCTGCTTTGGGTCCTTCCATCGGTACGCACAGTATCTGAATTTTTCACACCCTCTTATCAGGGAAAGGTTCAATCCGAGGGCATGTGCTTGGGCCTACGGGATGAATATATTTGATCTTGATGCTTGGAGGCAGGAGAAAAGCACCGAGCAGTACCATTACTGGCAGAACTTGAATGAGGACCGGACTCTCTGGAAATTGGGGACTCTTCCTCCGGGGCTGATTACCTTCTACTCGACAACAAAGTCGTTGGACAAATCGTGGCATGTGCTTGGGCTGGGGTACAATCCCAGTATTAGCATGGACGAGATTAGAAAAGCTGCGGTCATTCATTACAACGGAAACATGAAACCTTGGTTGGACGTTGCTATGAACCAATACAAGAAACTCTGGACTTATTATTTGGACAATGATATGGAATTTGTTCAGATGTGCAATTTTGGCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

433

Amino Acids

50.6

Weight (kDa)

8.36

Isoelectric Point (pI)

33.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_transf_8	PF01501	99 - 405	8.8e-81	Glycosyl transferase family 8

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02350
fragaria_vesca	FvH4_6g45970 FvH4_6g45970
malus_domestica	MD09G1078600.v1.1 MD17G1068800.v1.1
prunus_persica	Prupe.3G245800_v2.0.a1
pyrus_communis	pycom09g00530 pycom17g06920
rosa_chinensis	RchiOBHm_Chr2g0164201
rosa_laevigata	RLG00000021444
rosa_multiflora	Rmu_co8399087.1_g000001 Rmu_sc0001427.1_g000015 Rmu_sc0025732.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086720
rosa_rugosa	Rorug02G0507000
rosa_samantha	Rh2AG575400 Rh2BG586000 Rh2CG556900 Rh2DG595600
rosa_wichuraiana	Rw2G047620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	200
AasI	GACNNNNNNGTC	1 cut(s)	1093
Acc36I	ACCTGC	1 cut(s)	860
AciI	CCGC	2 cut(s)	21, 1172
AcoI	YGGCCR	1 cut(s)	273
AcsI	RAATTY	5 cut(s)	297, 341, 756, 889, 1268
AfaI	GTAC	7 cut(s)	317, 362, 411, 695, 875, 1004, 1133
AfiI	CCNNNNNNNGG	2 cut(s)	858, 870
AflIII	ACRYGT	1 cut(s)	448
AgsI	TTSAA	7 cut(s)	32, 166, 571, 709, 788, 922, 1024
AjuI	GAANNNNNNNTTGG	4 cut(s)	803, 835, 1190, 1222
AluBI	AGCT	4 cut(s)	148, 231, 842, 1169
AluI	AGCT	4 cut(s)	148, 231, 842, 1169
Alw26I	GTCTC	2 cut(s)	403, 842
AlwNI	CAGNNNCTG	1 cut(s)	886
AoxI	GGCC	3 cut(s)	273, 512, 942
ApeKI	GCWGC	2 cut(s)	239, 1169
ApoI	RAATTY	5 cut(s)	297, 341, 756, 889, 1268
ArsI	GACNNNNNNTTYG	2 cut(s)	1234, 1266
Asp700I	GAANNNNTTC	1 cut(s)	1272
AspS9I	GGNCC	6 cut(s)	18, 41, 349, 861, 942, 1030
AsuC2I	CCSGG	3 cut(s)	9, 308, 1065
AsuHPI	GGTGA	5 cut(s)	94, 433, 553, 704, 844
AvaII	GGWCC	5 cut(s)	18, 41, 349, 861, 1030
BalI	TGGCCA	1 cut(s)	275
BarI	GAAGNNNNNNTAC	1 cut(s)	28
BbsI	GAAGAC	1 cut(s)	445
BbvI	GCAGC	2 cut(s)	226, 1156
BccI	CCATC	1 cut(s)	876
BciVI	GTATCC	3 cut(s)	163, 655, 750
BcnI	CCSGG	3 cut(s)	9, 308, 1065
BcoDI	GTCTC	2 cut(s)	403, 842
BfuAI	ACCTGC	1 cut(s)	860
BfuI	GTATCC	3 cut(s)	163, 655, 750
BisI	GCNGC	2 cut(s)	240, 1170
BlsI	GCNGC	2 cut(s)	241, 1171
BmcAI	AGTACT	1 cut(s)	695
Bme1390I	CCNGG	3 cut(s)	9, 308, 1065
Bme18I	GGWCC	5 cut(s)	18, 41, 349, 861, 1030
BmgT120I	GGNCC	6 cut(s)	18, 41, 349, 861, 942, 1030
BmiI	GGNNCC	3 cut(s)	330, 351, 862
BmrFI	CCNGG	3 cut(s)	9, 308, 1065
BmrI	ACTGGG	1 cut(s)	1134
BmsI	GCATC	1 cut(s)	961
BmuI	ACTGGG	1 cut(s)	1134
BpiI	GAAGAC	1 cut(s)	445
BpuEI	CTTGAG	3 cut(s)	134, 613, 623
BpuMI	CCSGG	3 cut(s)	9, 308, 1065
Bsa29I	ATCGAT	2 cut(s)	248, 816
BsaI	GGTCTC	1 cut(s)	842
BsaJI	CCNNGG	5 cut(s)	440, 657, 926, 1064, 1202
BsaWI	WCCGGW	1 cut(s)	1032
BsaXI	ACNNNNNCTCC	2 cut(s)	1045, 1075
Bsc4I	CCNNNNNNNGG	2 cut(s)	858, 870
Bse1I	ACTGG	3 cut(s)	587, 1016, 1140
BseCI	ATCGAT	2 cut(s)	248, 816
BseDI	CCNNGG	5 cut(s)	440, 657, 926, 1064, 1202
BseGI	GGATG	5 cut(s)	55, 61, 480, 775, 957
BseLI	CCNNNNNNNGG	2 cut(s)	858, 870
BseMII	CTCAG	1 cut(s)	414
BseNI	ACTGG	3 cut(s)	587, 1016, 1140
BseXI	GCAGC	2 cut(s)	226, 1156
BseYI	CCCAGC	1 cut(s)	1126
BsgI	GTGCAG	1 cut(s)	734
BshFI	GGCC	3 cut(s)	275, 514, 944
BshVI	ATCGAT	2 cut(s)	248, 816
BsiSI	CCGG	5 cut(s)	8, 308, 731, 1033, 1064
BslFI	GGGAC	1 cut(s)	1066
BslI	CCNNNNNNNGG	2 cut(s)	858, 870
BsmAI	GTCTC	2 cut(s)	403, 842
BsmFI	GGGAC	1 cut(s)	1066
BsmI	GAATGC	1 cut(s)	655
BsnI	GGCC	3 cut(s)	275, 514, 944
Bso31I	GGTCTC	1 cut(s)	842
Bsp143I	GATC	3 cut(s)	413, 813, 964
BspACI	CCGC	2 cut(s)	21, 1172
BspANI	GGCC	3 cut(s)	275, 514, 944
BspCNI	CTCAG	1 cut(s)	413
BspDI	ATCGAT	2 cut(s)	248, 816
BspLI	GGNNCC	3 cut(s)	330, 351, 862
BspMI	ACCTGC	1 cut(s)	860
BspTNI	GGTCTC	1 cut(s)	842
BsrI	ACTGG	3 cut(s)	587, 1016, 1140
BssECI	CCNNGG	5 cut(s)	440, 657, 926, 1064, 1202
BssMI	GATC	3 cut(s)	413, 813, 964
BssT1I	CCWWGG	2 cut(s)	657, 1202
Bst4CI	ACNGT	3 cut(s)	41, 441, 882
Bst6I	CTCTTC	3 cut(s)	318, 580, 1062
BstAPI	GCANNNNNTGC	1 cut(s)	650
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	400
BstDSI	CCRYGG	1 cut(s)	440
BstF5I	GGATG	5 cut(s)	55, 61, 480, 775, 957
BstKTI	GATC	3 cut(s)	416, 816, 967
BstMAI	GTCTC	2 cut(s)	403, 842
BstMBI	GATC	3 cut(s)	413, 813, 964
BstMWI	GCNNNNNNNGC	2 cut(s)	650, 1290
BstNSI	RCATGY	3 cut(s)	452, 936, 1118
BstSCI	CCNGG	3 cut(s)	7, 306, 1063
BstV1I	GCAGC	2 cut(s)	226, 1156
BstV2I	GAAGAC	1 cut(s)	445
Bsu15I	ATCGAT	2 cut(s)	248, 816
BsuI	GTATCC	3 cut(s)	163, 655, 750
BsuRI	GGCC	3 cut(s)	275, 514, 944
BsuTUI	ATCGAT	2 cut(s)	248, 816
BtgI	CCRYGG	1 cut(s)	440
BtgZI	GCGATG	1 cut(s)	376
BtsCI	GGATG	5 cut(s)	55, 61, 480, 775, 957
BveI	ACCTGC	1 cut(s)	860
Cac8I	GCNNGC	1 cut(s)	229
CaiI	CAGNNNCTG	1 cut(s)	886
Cfr13I	GGNCC	6 cut(s)	18, 41, 349, 861, 942, 1030
ClaI	ATCGAT	2 cut(s)	248, 816
Csp6I	GTAC	7 cut(s)	316, 361, 410, 694, 874, 1003, 1132
CviAII	CATG	8 cut(s)	277, 449, 458, 673, 933, 1115, 1150, 1195
CviQI	GTAC	7 cut(s)	316, 361, 410, 694, 874, 1003, 1132
DdeI	CTNAG	1 cut(s)	400
DpnI	GATC	3 cut(s)	415, 815, 966
DpnII	GATC	3 cut(s)	413, 813, 964
DrdI	GACNNNNNNGTC	1 cut(s)	1093
DseDI	GACNNNNNNGTC	1 cut(s)	1093
EaeI	YGGCCR	1 cut(s)	273
Eam1104I	CTCTTC	3 cut(s)	318, 580, 1062
EarI	CTCTTC	3 cut(s)	318, 580, 1062
Eco130I	CCWWGG	2 cut(s)	657, 1202
Eco147I	AGGCCT	1 cut(s)	514
Eco31I	GGTCTC	1 cut(s)	842
Eco47I	GGWCC	5 cut(s)	18, 41, 349, 861, 1030
EcoO109I	RGGNCCY	2 cut(s)	349, 861
EcoT14I	CCWWGG	2 cut(s)	657, 1202
ErhI	CCWWGG	2 cut(s)	657, 1202
FaeI	CATG	8 cut(s)	280, 452, 461, 676, 936, 1118, 1153, 1198
FalI	AAGNNNNNCTT	2 cut(s)	614, 646
FaqI	GGGAC	1 cut(s)	1066
FatI	CATG	8 cut(s)	276, 448, 457, 672, 932, 1114, 1149, 1194
FauNDI	CATATG	2 cut(s)	532, 580
Fnu4HI	GCNGC	2 cut(s)	240, 1170
FokI	GGATG	5 cut(s)	62, 68, 487, 782, 964
Fsp4HI	GCNGC	2 cut(s)	240, 1170
GluI	GCNGC	2 cut(s)	240, 1170
GsaI	CCCAGC	1 cut(s)	1130
HaeIII	GGCC	3 cut(s)	275, 514, 944
HapII	CCGG	5 cut(s)	8, 308, 731, 1033, 1064
Hin1II	CATG	8 cut(s)	280, 452, 461, 676, 936, 1118, 1153, 1198
HinfI	GANTC	9 cut(s)	32, 122, 154, 478, 605, 637, 709, 1036, 1054
HpaII	CCGG	5 cut(s)	8, 308, 731, 1033, 1064
HphI	GGTGA	5 cut(s)	94, 433, 553, 704, 844
Hpy188I	TCNGA	6 cut(s)	37, 159, 382, 888, 927, 1278
Hpy188III	TCNNGA	7 cut(s)	73, 151, 568, 592, 968, 1042, 1240
HpyAV	CCTTC	9 cut(s)	70, 79, 160, 487, 538, 725, 823, 874, 1087
HpyCH4III	ACNGT	3 cut(s)	41, 441, 882
HpyCH4IV	ACGT	1 cut(s)	1212
HpyCH4V	TGCA	9 cut(s)	227, 242, 265, 371, 485, 530, 619, 751, 1284
HpyF10VI	GCNNNNNNNGC	2 cut(s)	650, 1290
HpyF3I	CTNAG	1 cut(s)	400
HpySE526I	ACGT	1 cut(s)	1212
Hsp92II	CATG	8 cut(s)	280, 452, 461, 676, 936, 1118, 1153, 1198
Kzo9I	GATC	3 cut(s)	413, 813, 964
LmnI	GCTCC	1 cut(s)	839
Lsp1109I	GCAGC	2 cut(s)	226, 1156
LweI	GCATC	1 cut(s)	961
MaeII	ACGT	1 cut(s)	1212
MaeIII	GTNAC	2 cut(s)	11, 463
MalI	GATC	3 cut(s)	415, 815, 966
MboI	GATC	3 cut(s)	413, 813, 964
MboII	GAAGA	7 cut(s)	223, 335, 445, 566, 567, 823, 1049
MlsI	TGGCCA	1 cut(s)	275
MluNI	TGGCCA	1 cut(s)	275
MlyI	GAGTC	4 cut(s)	131, 614, 1030, 1048
MmeI	TCCRAC	2 cut(s)	1080, 1188
Mox20I	TGGCCA	1 cut(s)	275
MroXI	GAANNNNTTC	1 cut(s)	1272
MscI	TGGCCA	1 cut(s)	275
MseI	TTAA	3 cut(s)	110, 186, 504
Msp20I	TGGCCA	1 cut(s)	275
MspI	CCGG	5 cut(s)	8, 308, 731, 1033, 1064
MspR9I	CCNGG	3 cut(s)	9, 308, 1065
Mva1269I	GAATGC	1 cut(s)	655
MwoI	GCNNNNNNNGC	2 cut(s)	650, 1290
NciI	CCSGG	3 cut(s)	9, 308, 1065
NdeI	CATATG	2 cut(s)	532, 580
NdeII	GATC	3 cut(s)	413, 813, 964
NlaIII	CATG	8 cut(s)	280, 452, 461, 676, 936, 1118, 1153, 1198
NlaIV	GGNNCC	3 cut(s)	330, 351, 862
NspI	RCATGY	3 cut(s)	452, 936, 1118
PceI	AGGCCT	1 cut(s)	514
PciI	ACATGT	1 cut(s)	448
PctI	GAATGC	1 cut(s)	655
PdmI	GAANNNNTTC	1 cut(s)	1272
PfeI	GAWTC	5 cut(s)	32, 154, 478, 637, 709
PkrI	GCNGC	2 cut(s)	241, 1171
PleI	GAGTC	4 cut(s)	130, 613, 1030, 1048
PpsI	GAGTC	4 cut(s)	130, 613, 1030, 1048
PpuMI	RGGWCCY	2 cut(s)	349, 861
PscI	ACATGT	1 cut(s)	448
PsiI	TTATAA	1 cut(s)	200
Psp5II	RGGWCCY	2 cut(s)	349, 861
PspFI	CCCAGC	1 cut(s)	1126
PspN4I	GGNNCC	3 cut(s)	330, 351, 862
PspPI	GGNCC	6 cut(s)	18, 41, 349, 861, 942, 1030
PspPPI	RGGWCCY	2 cut(s)	349, 861
PstNI	CAGNNNCTG	1 cut(s)	886
RsaI	GTAC	7 cut(s)	317, 362, 411, 695, 875, 1004, 1133
RsaNI	GTAC	7 cut(s)	316, 361, 410, 694, 874, 1003, 1132
SaqAI	TTAA	3 cut(s)	110, 186, 504
SatI	GCNGC	2 cut(s)	240, 1170
Sau3AI	GATC	3 cut(s)	413, 813, 964
Sau96I	GGNCC	6 cut(s)	18, 41, 349, 861, 942, 1030
ScaI	AGTACT	1 cut(s)	695
SchI	GAGTC	4 cut(s)	131, 614, 1030, 1048
ScrFI	CCNGG	3 cut(s)	9, 308, 1065
SfaNI	GCATC	1 cut(s)	961
SinI	GGWCC	5 cut(s)	18, 41, 349, 861, 1030
SmlI	CTYRAG	3 cut(s)	149, 592, 602
SmoI	CTYRAG	3 cut(s)	149, 592, 602
SseBI	AGGCCT	1 cut(s)	514
SsiI	CCGC	2 cut(s)	21, 1172
StuI	AGGCCT	1 cut(s)	514
StyD4I	CCNGG	3 cut(s)	7, 306, 1063
StyI	CCWWGG	2 cut(s)	657, 1202
TaaI	ACNGT	3 cut(s)	41, 441, 882
TaiI	ACGT	1 cut(s)	1215
TaqI	TCGA	5 cut(s)	72, 233, 248, 816, 1085
TatI	WGTACW	2 cut(s)	315, 693
TfiI	GAWTC	5 cut(s)	32, 154, 478, 637, 709
Tru1I	TTAA	3 cut(s)	110, 186, 504
Tru9I	TTAA	3 cut(s)	110, 186, 504
TseI	GCWGC	2 cut(s)	239, 1169
TspGWI	ACGGA	1 cut(s)	1203
VpaK11BI	GGWCC	5 cut(s)	18, 41, 349, 861, 1030
XapI	RAATTY	5 cut(s)	297, 341, 756, 889, 1268
XceI	RCATGY	3 cut(s)	452, 936, 1118
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1147
XmnI	GAANNNNTTC	1 cut(s)	1272
ZrmI	AGTACT	1 cut(s)	695

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.