Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8399087.1

Orthogroup ID

OG0011476

Physical Location & Seq

Genomic Coordinates Forward (+)

66 .. 1244

Gene Structure 1179 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8399087.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1179 bp

atgcgtagaacgtttctagctttaaattctgacccactgaaaaccagattagatttgatatacaagcaagcaaatgatcatgtcactcttgtcaatgcgtatgcggcttatgccaggaagcttaagcttgagatatctaggcaaatgagaatgtttgatgatttggcatccaatttctctgatcttcaaaagaaaccgagttaccggactagtttgtttgaatcagatggtccagtggatgaggatgttttgaggcagtttgagaaggaggtgaaggataaggttaaaactgcccggttaatgatcacagagtcaaaggagaactatgataatcagctcaagattcagaagctgaaggatacgatttttgctgttaatgagttgcttataaaggcaaagaagaacggggcatttgcgagctcgattgcagcaaggtcgattccaaaaagtttgcattgtttggccatgaggcttgttgaagagagaatttcacatccggagaagtataaggaggaggaaccaagccctgagtttgaggacccaactttgtaccattatgcaattttttcagataacgtgattgctgtctcggtggtgatccgatctgtggtgaataatgcaattgaaccgtggagacatgttttccatgttgttacagataggatgaatcttgcaccaatgaaggtttggtttaagatgagaccagtggaacggggtgcgtatgtggaggtgaaggcaatagaagattttactttcttgaattcctcatatgtgccaagtttgcaggggcttgctaccaaggagacatctaaaaggaataggaacccatactcgtcactattgcatgagcttcggttttatatgccagaaatgtatcctaaactaaacaagattctctttctggatgatgatgttgtggttcaaaaagacttgacaggattgtggaatattgatttggatggtaaggtgaatggagcagttgagacctgctttgggtccttccgtcgatatgctcagtacttgaacttttcacaccctcttattagagagaggttcaatccccggtcctgtgcttgggcatatggaatgaatatatttgatcttgacgcttggaggcaggagggatgcacagagcaataccatagctggcagaacttggtaagtgtacaatttccctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0047262 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

ko00520 map00520

Pfam Domains

Protein Families

Glyco_transf_8

Protein Analysis

392

Amino Acids

45.7

Weight (kDa)

8.62

Isoelectric Point (pI)

47.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011476)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G02350
fragaria_vesca	FvH4_6g45970 FvH4_6g45970
malus_domestica	MD09G1078600.v1.1 MD17G1068800.v1.1
prunus_persica	Prupe.3G245800_v2.0.a1
pyrus_communis	pycom09g00530 pycom17g06920
rosa_chinensis	RchiOBHm_Chr2g0164201
rosa_laevigata	RLG00000021444
rosa_multiflora	Rmu_co8399087.1_g000001 Rmu_sc0001427.1_g000015 Rmu_sc0025732.1_g000002
rosa_roxburghii	Rroxscaffold_2G00086720
rosa_rugosa	Rorug02G0507000
rosa_samantha	Rh2AG575400 Rh2BG586000 Rh2CG556900 Rh2DG595600
rosa_wichuraiana	Rw2G047620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	389
Acc36I	ACCTGC	1 cut(s)	995
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	1 cut(s)	104
AclI	AACGTT	1 cut(s)	11
AclWI	GGATC	1 cut(s)	592
AcoI	YGGCCR	1 cut(s)	462
AcsI	RAATTY	3 cut(s)	25, 486, 760
AcuI	CTGAAG	1 cut(s)	374
AfaI	GTAC	3 cut(s)	551, 1019, 1167
AfiI	CCNNNNNNNGG	3 cut(s)	607, 993, 1074
AflII	CTTAAG	1 cut(s)	122
AflIII	ACRYGT	1 cut(s)	637
AgsI	TTSAA	8 cut(s)	188, 221, 479, 626, 760, 923, 1024, 1057
AhlI	ACTAGT	1 cut(s)	209
AjnI	CCWGG	1 cut(s)	113
AjuI	GAANNNNNNNTTGG	2 cut(s)	938, 970
AluBI	AGCT	8 cut(s)	20, 121, 127, 337, 352, 420, 850, 1146
AluI	AGCT	8 cut(s)	20, 121, 127, 337, 352, 420, 850, 1146
Alw21I	GWGCWC	1 cut(s)	422
Alw26I	GTCTC	5 cut(s)	592, 628, 694, 797, 977
AlwI	GGATC	1 cut(s)	592
AlwNI	CAGNNNCTG	1 cut(s)	352
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	1 cut(s)	462
ApeKI	GCWGC	1 cut(s)	428
ApoI	RAATTY	3 cut(s)	25, 486, 760
AspS9I	GGNCC	4 cut(s)	230, 538, 996, 1065
AsuC2I	CCSGG	2 cut(s)	295, 1063
AsuHPI	GGTGA	5 cut(s)	283, 607, 622, 742, 979
AvaII	GGWCC	4 cut(s)	230, 538, 996, 1065
BalI	TGGCCA	1 cut(s)	464
BanII	GRGCYC	1 cut(s)	422
Bbv12I	GWGCWC	1 cut(s)	422
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	2 cut(s)	221, 953
BcgI	CGANNNNNNTGC	4 cut(s)	417, 451, 833, 867
BciT130I	CCWGG	1 cut(s)	115
BciVI	GTATCC	2 cut(s)	352, 885
BclI	TGATCA	2 cut(s)	76, 303
BcnI	CCSGG	2 cut(s)	295, 1063
BcoDI	GTCTC	5 cut(s)	592, 628, 694, 797, 977
BcuI	ACTAGT	1 cut(s)	209
BfaI	CTAG	3 cut(s)	17, 138, 210
BfrI	CTTAAG	1 cut(s)	122
BfuAI	ACCTGC	1 cut(s)	995
BfuI	GTATCC	2 cut(s)	352, 885
BisI	GCNGC	2 cut(s)	105, 429
BlsI	GCNGC	2 cut(s)	106, 430
BmcAI	AGTACT	1 cut(s)	1019
Bme1390I	CCNGG	3 cut(s)	115, 295, 1063
Bme18I	GGWCC	4 cut(s)	230, 538, 996, 1065
BmgT120I	GGNCC	4 cut(s)	230, 538, 996, 1065
BmiI	GGNNCC	4 cut(s)	519, 540, 824, 997
BmrFI	CCNGG	3 cut(s)	115, 295, 1063
BmsI	GCATC	2 cut(s)	176, 1115
BpuEI	CTTGAG	2 cut(s)	149, 323
BpuMI	CCSGG	2 cut(s)	295, 1063
BsaI	GGTCTC	2 cut(s)	694, 977
BsaJI	CCNNGG	3 cut(s)	629, 798, 1061
BsaWI	WCCGGW	2 cut(s)	204, 496
Bsc4I	CCNNNNNNNGG	3 cut(s)	607, 993, 1074
Bse1I	ACTGG	2 cut(s)	233, 704
BseAI	TCCGGA	1 cut(s)	496
BseBI	CCWGG	1 cut(s)	115
BseDI	CCNNGG	3 cut(s)	629, 798, 1061
BseGI	GGATG	8 cut(s)	167, 244, 250, 493, 669, 910, 964, 1130
BseLI	CCNNNNNNNGG	3 cut(s)	607, 993, 1074
BseMII	CTCAG	2 cut(s)	519, 1028
BseNI	ACTGG	2 cut(s)	233, 704
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	1 cut(s)	440
BshFI	GGCC	1 cut(s)	464
BsiHKAI	GWGCWC	1 cut(s)	422
BsiSI	CCGG	4 cut(s)	205, 295, 497, 1063
BslI	CCNNNNNNNGG	3 cut(s)	607, 993, 1074
BsmAI	GTCTC	5 cut(s)	592, 628, 694, 797, 977
BsnI	GGCC	1 cut(s)	464
Bso31I	GGTCTC	2 cut(s)	694, 977
Bsp1286I	GDGCHC	1 cut(s)	422
Bsp13I	TCCGGA	1 cut(s)	496
Bsp1407I	TGTACA	1 cut(s)	1165
Bsp143I	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	1 cut(s)	464
BspCNI	CTCAG	2 cut(s)	520, 1027
BspEI	TCCGGA	1 cut(s)	496
BspLI	GGNNCC	4 cut(s)	519, 540, 824, 997
BspMI	ACCTGC	1 cut(s)	995
BspPI	GGATC	1 cut(s)	592
BspTI	CTTAAG	1 cut(s)	122
BspTNI	GGTCTC	2 cut(s)	694, 977
BsrGI	TGTACA	1 cut(s)	1165
BsrI	ACTGG	2 cut(s)	233, 704
BssECI	CCNNGG	3 cut(s)	629, 798, 1061
BssMI	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
BssT1I	CCWWGG	1 cut(s)	798
Bst2UI	CCWGG	1 cut(s)	115
Bst4CI	ACNGT	1 cut(s)	630
Bst6I	CTCTTC	1 cut(s)	474
BstAFI	CTTAAG	1 cut(s)	122
BstAUI	TGTACA	1 cut(s)	1165
BstC8I	GCNNGC	4 cut(s)	69, 418, 792, 1148
BstDEI	CTNAG	2 cut(s)	528, 1014
BstDSI	CCRYGG	1 cut(s)	629
BstF5I	GGATG	8 cut(s)	167, 244, 250, 493, 669, 910, 964, 1130
BstKTI	GATC	6 cut(s)	79, 184, 306, 600, 605, 1102
BstMAI	GTCTC	5 cut(s)	592, 628, 694, 797, 977
BstMBI	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	104, 110, 781
BstNI	CCWGG	1 cut(s)	115
BstNSI	RCATGY	1 cut(s)	641
BstSCI	CCNGG	3 cut(s)	113, 293, 1061
BstV1I	GCAGC	1 cut(s)	440
BsuI	GTATCC	2 cut(s)	352, 885
BsuRI	GGCC	1 cut(s)	464
BtgI	CCRYGG	1 cut(s)	629
BtsCI	GGATG	8 cut(s)	167, 244, 250, 493, 669, 910, 964, 1130
BtsIMutI	CAGTG	3 cut(s)	35, 240, 711
BveI	ACCTGC	1 cut(s)	995
Cac8I	GCNNGC	4 cut(s)	69, 418, 792, 1148
CaiI	CAGNNNCTG	1 cut(s)	352
Cfr13I	GGNCC	4 cut(s)	230, 538, 996, 1065
CseI	GACGC	1 cut(s)	1115
Csp6I	GTAC	3 cut(s)	550, 1018, 1166
CviAII	CATG	5 cut(s)	80, 466, 638, 647, 845
CviQI	GTAC	3 cut(s)	550, 1018, 1166
DdeI	CTNAG	2 cut(s)	528, 1014
DpnI	GATC	6 cut(s)	78, 183, 305, 599, 604, 1101
DpnII	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
DraI	TTTAAA	1 cut(s)	24
EaeI	YGGCCR	1 cut(s)	462
Eam1104I	CTCTTC	1 cut(s)	474
EarI	CTCTTC	1 cut(s)	474
Ecl136II	GAGCTC	1 cut(s)	420
Eco130I	CCWWGG	1 cut(s)	798
Eco24I	GRGCYC	1 cut(s)	422
Eco31I	GGTCTC	2 cut(s)	694, 977
Eco32I	GATATC	1 cut(s)	135
Eco47I	GGWCC	4 cut(s)	230, 538, 996, 1065
Eco53kI	GAGCTC	1 cut(s)	420
Eco57I	CTGAAG	1 cut(s)	374
EcoICRI	GAGCTC	1 cut(s)	420
EcoO109I	RGGNCCY	2 cut(s)	538, 996
EcoRI	GAATTC	1 cut(s)	760
EcoRII	CCWGG	1 cut(s)	113
EcoRV	GATATC	1 cut(s)	135
EcoT14I	CCWWGG	1 cut(s)	798
EcoT38I	GRGCYC	1 cut(s)	422
ErhI	CCWWGG	1 cut(s)	798
FaeI	CATG	5 cut(s)	83, 469, 641, 650, 848
FalI	AAGNNNNNCTT	2 cut(s)	881, 913
FatI	CATG	5 cut(s)	79, 465, 637, 646, 844
FauNDI	CATATG	2 cut(s)	769, 1081
FbaI	TGATCA	2 cut(s)	76, 303
Fnu4HI	GCNGC	2 cut(s)	105, 429
FokI	GGATG	8 cut(s)	154, 251, 257, 480, 676, 917, 971, 1137
FriOI	GRGCYC	1 cut(s)	422
Fsp4HI	GCNGC	2 cut(s)	105, 429
FspBI	CTAG	3 cut(s)	17, 138, 210
GluI	GCNGC	2 cut(s)	105, 429
HaeIII	GGCC	1 cut(s)	464
HapII	CCGG	4 cut(s)	205, 295, 497, 1063
HgaI	GACGC	1 cut(s)	1115
Hin1II	CATG	5 cut(s)	83, 469, 641, 650, 848
HindIII	AAGCTT	2 cut(s)	119, 125
HinfI	GANTC	6 cut(s)	221, 311, 343, 439, 667, 892
HpaII	CCGG	4 cut(s)	205, 295, 497, 1063
HphI	GGTGA	5 cut(s)	283, 607, 622, 742, 979
Hpy166II	GTNNAC	1 cut(s)	1166
Hpy188I	TCNGA	6 cut(s)	31, 181, 226, 348, 571, 602
Hpy188III	TCNNGA	5 cut(s)	340, 497, 757, 902, 1103
Hpy8I	GTNNAC	1 cut(s)	1166
Hpy99I	CGWCG	1 cut(s)	1008
HpyAV	CCTTC	6 cut(s)	259, 268, 349, 676, 727, 1009
HpyCH4III	ACNGT	1 cut(s)	630
HpyCH4IV	ACGT	2 cut(s)	11, 576
HpyCH4V	TGCA	8 cut(s)	428, 454, 560, 620, 674, 784, 844, 1128
HpyF10VI	GCNNNNNNNGC	3 cut(s)	104, 110, 781
HpyF3I	CTNAG	2 cut(s)	528, 1014
HpySE526I	ACGT	2 cut(s)	11, 576
Hsp92II	CATG	5 cut(s)	83, 469, 641, 650, 848
Kpn2I	TCCGGA	1 cut(s)	496
Ksp22I	TGATCA	2 cut(s)	76, 303
Kzo9I	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
LmnI	GCTCC	1 cut(s)	974
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	2 cut(s)	176, 1115
MaeI	CTAG	3 cut(s)	17, 138, 210
MaeII	ACGT	2 cut(s)	11, 576
MaeIII	GTNAC	4 cut(s)	82, 200, 652, 834
MalI	GATC	6 cut(s)	78, 183, 305, 599, 604, 1101
MboI	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
MboII	GAAGA	4 cut(s)	176, 412, 491, 755
MfeI	CAATTG	1 cut(s)	621
MhlI	GDGCHC	1 cut(s)	422
MlsI	TGGCCA	1 cut(s)	464
MluCI	AATT	7 cut(s)	25, 172, 486, 561, 621, 760, 1169
MluNI	TGGCCA	1 cut(s)	464
MlyI	GAGTC	1 cut(s)	320
Mox20I	TGGCCA	1 cut(s)	464
MroI	TCCGGA	1 cut(s)	496
MscI	TGGCCA	1 cut(s)	464
MseI	TTAA	6 cut(s)	23, 123, 285, 299, 375, 693
Msp20I	TGGCCA	1 cut(s)	464
MspCI	CTTAAG	1 cut(s)	122
MspI	CCGG	4 cut(s)	205, 295, 497, 1063
MspR9I	CCNGG	3 cut(s)	115, 295, 1063
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	1 cut(s)	115
MwoI	GCNNNNNNNGC	3 cut(s)	104, 110, 781
NciI	CCSGG	2 cut(s)	295, 1063
NdeI	CATATG	2 cut(s)	769, 1081
NdeII	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
NlaIII	CATG	5 cut(s)	83, 469, 641, 650, 848
NlaIV	GGNNCC	4 cut(s)	519, 540, 824, 997
NmuCI	GTSAC	2 cut(s)	82, 834
NspI	RCATGY	1 cut(s)	641
PciI	ACATGT	1 cut(s)	637
PfeI	GAWTC	5 cut(s)	221, 343, 439, 667, 892
PkrI	GCNGC	2 cut(s)	106, 430
PleI	GAGTC	1 cut(s)	319
PpsI	GAGTC	1 cut(s)	319
PpuMI	RGGWCCY	2 cut(s)	538, 996
PscI	ACATGT	1 cut(s)	637
PsiI	TTATAA	1 cut(s)	389
Psp124BI	GAGCTC	1 cut(s)	422
Psp1406I	AACGTT	1 cut(s)	11
Psp5II	RGGWCCY	2 cut(s)	538, 996
Psp6I	CCWGG	1 cut(s)	113
PspGI	CCWGG	1 cut(s)	113
PspN4I	GGNNCC	4 cut(s)	519, 540, 824, 997
PspPI	GGNCC	4 cut(s)	230, 538, 996, 1065
PspPPI	RGGWCCY	2 cut(s)	538, 996
PstNI	CAGNNNCTG	1 cut(s)	352
RsaI	GTAC	3 cut(s)	551, 1019, 1167
RsaNI	GTAC	3 cut(s)	550, 1018, 1166
SacI	GAGCTC	1 cut(s)	422
SaqAI	TTAA	6 cut(s)	23, 123, 285, 299, 375, 693
SatI	GCNGC	2 cut(s)	105, 429
Sau3AI	GATC	6 cut(s)	76, 181, 303, 597, 602, 1099
Sau96I	GGNCC	4 cut(s)	230, 538, 996, 1065
ScaI	AGTACT	1 cut(s)	1019
SchI	GAGTC	1 cut(s)	320
ScrFI	CCNGG	3 cut(s)	115, 295, 1063
SduI	GDGCHC	1 cut(s)	422
SfaNI	GCATC	2 cut(s)	176, 1115
SinI	GGWCC	4 cut(s)	230, 538, 996, 1065
SmlI	CTYRAG	3 cut(s)	122, 128, 338
SmoI	CTYRAG	3 cut(s)	122, 128, 338
SpeI	ACTAGT	1 cut(s)	209
Sse9I	AATT	7 cut(s)	25, 172, 486, 561, 621, 760, 1169
SsiI	CCGC	1 cut(s)	104
SspI	AATATT	1 cut(s)	949
SspMI	CTAG	3 cut(s)	17, 138, 210
SstI	GAGCTC	1 cut(s)	422
StyD4I	CCNGG	3 cut(s)	113, 293, 1061
StyI	CCWWGG	1 cut(s)	798
TaaI	ACNGT	1 cut(s)	630
TaiI	ACGT	2 cut(s)	14, 579
TaqI	TCGA	3 cut(s)	422, 437, 1006
TasI	AATT	7 cut(s)	25, 172, 486, 561, 621, 760, 1169
TatI	WGTACW	2 cut(s)	1017, 1165
TauI	GCSGC	1 cut(s)	107
TfiI	GAWTC	5 cut(s)	221, 343, 439, 667, 892
Tru1I	TTAA	6 cut(s)	23, 123, 285, 299, 375, 693
Tru9I	TTAA	6 cut(s)	23, 123, 285, 299, 375, 693
TscAI	CASTG	3 cut(s)	42, 240, 711
TseFI	GTSAC	2 cut(s)	82, 834
TseI	GCWGC	1 cut(s)	428
Tsp45I	GTSAC	2 cut(s)	82, 834
TspDTI	ATGAA	3 cut(s)	680, 695, 1103
TspGWI	ACGGA	1 cut(s)	992
TspRI	CASTG	3 cut(s)	42, 240, 711
Vha464I	CTTAAG	1 cut(s)	122
VpaK11BI	GGWCC	4 cut(s)	230, 538, 996, 1065
XapI	RAATTY	3 cut(s)	25, 486, 760
XceI	RCATGY	1 cut(s)	641
XcmI	CCANNNNNNNNNTGG	1 cut(s)	684
XspI	CTAG	3 cut(s)	17, 138, 210
ZrmI	AGTACT	1 cut(s)	1019

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.