pycom17g07050

Belongs to the AAA ATPase family

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
Physical Location & Seq
Forward (+)
5073143 .. 5076248
3106 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1716 bp
ATGGCTTCTTGTTTTTCTGTTGTTTCCAATACCGGGTTCTTATCTATCCCCAACAAATTAGAATTTCACGGCGATAAGTCCAAGTCTTTGGGAAGGTTCAGAGGTTGCTGTAGTTCATTTGCTTTTCGTTCCGTGGGTTTTCGTAAATTGCGAAACTTTCAACGTGGGTTGTTCTTGAACAATGAGCTTAGGCCACTGATGAATGGAAACAGTGGAGTTTGGTTAGAGGGATTGAATAGTTGTTGTAAATCTAGACATGGGTTGTGTTGTTACAATAAAATGGAGCCATTTATGAATGCAAATAGCGCGAATAAGCGGGTCCATTTGGGGAAGAAAGGAGACGCTAAGTTGAGGTCTTTGAGGAGGAGATTTTCTTTGAGATTGCGCCCGAGGTTGCGGTGGTTAGCTATGAGAATGAAAAGAGTTACAATTCCGTCAGTGTTGAATGGTGTTGGGACTTTCTTGCGAATGAACATGAGAAGAGTGACACTTGTTTCTTTGGTTTCTGCGATATTGGGGCTCTGCTATTTGTTTCTGAAGTTCACAGCTGTGCCCTCTCGGAAAATGGTTCCATATTCAGAATTGATAACAAGCCTTCAAAATGAGTCTGTTACAAAAGTTCTACTTGAAGAGGGGTCTCGTCGGATATATTATAACACAAATTCTCGCGTTGATGGGGGTACTCAATTGTCTGAGGGAGAATTGCCAAGCATTGAAAGTGAGAATGTGGCTGATAAAGTCACAAGTAATGATGGCTCTCGATCTAGTCAAGCACTGAATAGGAATGTATTGAGAAAATTATCACCGACTCAAGCTTCTACGCCTGACTGGCCGTATTTGACCAGAAAAGTAGATCATGATGAGAAATTTTTACTTAGTTTGATGAGAGAGAAAGGAATTACATATAGCTCGGCTCCTCAATCAGTTTTGATGTCAATGAGGACTACTTTGATAACCATAATATCTCTGTGGATTCCTTTGATGCCATTGATGTGGCTTCTTTATCGTCAACTTTCTGCTGCTAATAGCCCAGCTCGAAGGCGGCGACCTGATAAGCAGTTGGTTGGATTTGAAGATGTTGAGGGAGTTGATGCTGCGAAATTGGAGCTTATGGAGATAGTTTTATGCTTGCAAGGAGCTATTAACTACAACAAACTAGGAGCAAAGTTACCCAGAGGGGTATTGCTGGTTGGTCCTCCCGGAACAGGGAAAACATTACTTGCCCGTGCAGTGGCTGGAGAAGCAGGTGTACCATTTTTCAGTGTTTCTGCCAGTGAATTTGTGGAGATGTTTGTTGGAAGAGGAGCAGCTCGCATTAGAGACCTTTTTAATATGGCAAGGAAACATTCGCCTTCAATTGTATTCATTGATGAGCTTGATGCAGTTGGAACGAAGCGTGGCAGAAGTTTCAATGATGAGCGTGACCAAACATTGAATCAGCTGCTGACGGAAATGGATGGATTTGAGTCAGACTCGAAGGTGATTGTTGTTGCAGCAACAAACAGGCCCGAAGTACTAGATTCTGCCCTTTGTAGGCCAGGCCGCTTCTCAAGAAAAATAGTTGTAGGAGAACCAGATGAAGAAGGAAGGAGAAAGATATTGGCTGTACATTTGAGAGGAGTTCCTTTGGAGGAAGACACTAATCTTATTTGCGATCTCATTGCTTCACTGACAACAGGTTTTGTAGGTGCTCGATCTTGCAAACATCGTCAATGA

Protein Analysis

572

Amino Acids

63.78

Weight (kDa)

10.0

Isoelectric Point (pI)

47.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 394 - 523 2.9e-46 ATPase family associated with various cellular activities (AAA)
nSTAND3 PF20720 394 - 538 3.3e-06 Novel STAND NTPase 3
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 654
AarI CACCTGC 1 cut(s) 1235
Acc36I ACCTGC 1 cut(s) 1235
AccII CGCG 2 cut(s) 308, 669
AciI CCGC 4 cut(s) 316, 397, 1042, 1543
AcoI YGGCCR 1 cut(s) 830
AcsI RAATTY 4 cut(s) 62, 661, 866, 1277
AcuI CTGAAG 1 cut(s) 557
AfaI GTAC 4 cut(s) 682, 1251, 1515, 1608
AfiI CCNNNNNNNGG 5 cut(s) 33, 1205, 1206, 1231, 1533
AjnI CCWGG 1 cut(s) 1537
AjuI GAANNNNNNNTTGG 2 cut(s) 20, 52
AleI CACNNNNGTG 1 cut(s) 548
Alw21I GWGCWC 1 cut(s) 1693
Alw26I GTCTC 3 cut(s) 333, 642, 1314
AlwNI CAGNNNCTG 2 cut(s) 1235, 1444
Ama87I CYCGRG 1 cut(s) 388
AoxI GGCC 5 cut(s) 191, 830, 1505, 1535, 1540
ApeKI GCWGC 5 cut(s) 1019, 1094, 1307, 1441, 1493
ApoI RAATTY 4 cut(s) 62, 661, 866, 1277
AspLEI GCGC 2 cut(s) 308, 387
AspS9I GGNCC 3 cut(s) 319, 1193, 1506
AsuC2I CCSGG 2 cut(s) 34, 1200
AsuHPI GGTGA 2 cut(s) 795, 1492
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 2 cut(s) 319, 1193
BaeGI GKGCMC 1 cut(s) 555
BanII GRGCYC 1 cut(s) 522
BarI GAAGNNNNNNTAC 2 cut(s) 1233, 1265
BbsI GAAGAC 1 cut(s) 1641
Bbv12I GWGCWC 1 cut(s) 1693
BbvI GCAGC 5 cut(s) 1006, 1081, 1319, 1428, 1505
BccI CCATC 3 cut(s) 668, 746, 1451
BceAI ACGGC 2 cut(s) 85, 817
BcgI CGANNNNNNTGC 2 cut(s) 1643, 1677
BciT130I CCWGG 1 cut(s) 1539
BcnI CCSGG 2 cut(s) 34, 1200
BcoDI GTCTC 3 cut(s) 333, 642, 1314
BfaI CTAG 4 cut(s) 252, 765, 1157, 1517
BfmI CTRYAG 1 cut(s) 109
BfuAI ACCTGC 1 cut(s) 1235
BglI GCCNNNNNGGC 1 cut(s) 829
BisI GCNGC 7 cut(s) 1020, 1043, 1095, 1308, 1442, 1494, 1543
BlsI GCNGC 7 cut(s) 1021, 1044, 1096, 1309, 1443, 1495, 1544
BmcAI AGTACT 1 cut(s) 1515
Bme1390I CCNGG 3 cut(s) 34, 1200, 1539
Bme18I GGWCC 2 cut(s) 319, 1193
BmeT110I CYCGRG 1 cut(s) 388
BmgT120I GGNCC 3 cut(s) 319, 1193, 1506
BmiI GGNNCC 4 cut(s) 285, 320, 570, 915
BmrFI CCNGG 3 cut(s) 34, 1200, 1539
BmsI GCATC 3 cut(s) 972, 1081, 1369
BpiI GAAGAC 1 cut(s) 1641
BplI GAGNNNNNCTC 2 cut(s) 1457, 1489
BpmI CTGGAG 1 cut(s) 1257
Bpu10I CCTNAGC 1 cut(s) 188
BpuEI CTTGAG 2 cut(s) 795, 1534
BpuMI CCSGG 2 cut(s) 34, 1200
BsaI GGTCTC 2 cut(s) 642, 1314
BsaJI CCNNGG 2 cut(s) 132, 389
Bsc4I CCNNNNNNNGG 5 cut(s) 33, 1205, 1206, 1231, 1533
Bse1I ACTGG 2 cut(s) 833, 1272
Bse3DI GCAATG 1 cut(s) 1659
BseBI CCWGG 1 cut(s) 1539
BseDI CCNNGG 2 cut(s) 132, 389
BseGI GGATG 1 cut(s) 1462
BseLI CCNNNNNNNGG 5 cut(s) 33, 1205, 1206, 1231, 1533
BseMI GCAATG 1 cut(s) 1659
BseMII CTCAG 1 cut(s) 684
BseNI ACTGG 2 cut(s) 833, 1272
BseRI GAGGAG 5 cut(s) 376, 379, 906, 1317, 1632
BseSI GKGCMC 1 cut(s) 555
BseXI GCAGC 5 cut(s) 1006, 1081, 1319, 1428, 1505
BseYI CCCAGC 1 cut(s) 1030
BsgI GTGCAG 1 cut(s) 1248
Bsh1236I CGCG 2 cut(s) 308, 669
BshFI GGCC 5 cut(s) 193, 832, 1507, 1537, 1542
BsiHKAI GWGCWC 1 cut(s) 1693
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 2 cut(s) 33, 1200
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 5 cut(s) 33, 1205, 1206, 1231, 1533
BsmAI GTCTC 3 cut(s) 333, 642, 1314
BsmBI CGTCTC 1 cut(s) 333
BsmFI GGGAC 1 cut(s) 469
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 5 cut(s) 193, 832, 1507, 1537, 1542
Bso31I GGTCTC 2 cut(s) 642, 1314
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 3 cut(s) 522, 555, 1693
Bsp1407I TGTACA 1 cut(s) 1606
Bsp143I GATC 4 cut(s) 761, 853, 1654, 1694
BspACI CCGC 4 cut(s) 316, 397, 1042, 1543
BspANI GGCC 5 cut(s) 193, 832, 1507, 1537, 1542
BspCNI CTCAG 1 cut(s) 685
BspFNI CGCG 2 cut(s) 308, 669
BspHI TCATGA 1 cut(s) 856
BspLI GGNNCC 4 cut(s) 285, 320, 570, 915
BspMI ACCTGC 1 cut(s) 1235
BspTNI GGTCTC 2 cut(s) 642, 1314
BsrDI GCAATG 1 cut(s) 1659
BsrGI TGTACA 1 cut(s) 1606
BsrI ACTGG 2 cut(s) 833, 1272
BssECI CCNNGG 2 cut(s) 132, 389
BssMI GATC 4 cut(s) 761, 853, 1654, 1694
Bst2UI CCWGG 1 cut(s) 1539
Bst4CI ACNGT 1 cut(s) 212
Bst6I CTCTTC 3 cut(s) 475, 624, 1294
BstAUI TGTACA 1 cut(s) 1606
BstC8I GCNNGC 2 cut(s) 1130, 1312
BstDEI CTNAG 4 cut(s) 188, 345, 693, 875
BstDSI CCRYGG 1 cut(s) 132
BstF5I GGATG 1 cut(s) 1462
BstFNI CGCG 2 cut(s) 308, 669
BstHHI GCGC 2 cut(s) 308, 387
BstKTI GATC 4 cut(s) 764, 856, 1657, 1697
BstMAI GTCTC 3 cut(s) 333, 642, 1314
BstMBI GATC 4 cut(s) 761, 853, 1654, 1694
BstMWI GCNNNNNNNGC 3 cut(s) 305, 829, 1241
BstNI CCWGG 1 cut(s) 1539
BstSCI CCNGG 3 cut(s) 32, 1198, 1537
BstSFI CTRYAG 1 cut(s) 109
BstSLI GKGCMC 1 cut(s) 555
BstUI CGCG 2 cut(s) 308, 669
BstV1I GCAGC 5 cut(s) 1006, 1081, 1319, 1428, 1505
BstV2I GAAGAC 1 cut(s) 1641
BstXI CCANNNNNNTGG 2 cut(s) 88, 993
BsuRI GGCC 5 cut(s) 193, 832, 1507, 1537, 1542
BtgI CCRYGG 1 cut(s) 132
BtsCI GGATG 1 cut(s) 1462
BtsI GCAGTG 1 cut(s) 1236
BtsIMutI CAGTG 8 cut(s) 194, 217, 444, 773, 1236, 1267, 1279, 1667
BveI ACCTGC 1 cut(s) 1235
Cac8I GCNNGC 2 cut(s) 1130, 1312
CaiI CAGNNNCTG 2 cut(s) 1235, 1444
CciI TCATGA 1 cut(s) 856
CfoI GCGC 2 cut(s) 308, 387
Cfr13I GGNCC 3 cut(s) 319, 1193, 1506
CseI GACGC 1 cut(s) 350
Csp6I GTAC 4 cut(s) 681, 1250, 1514, 1607
CviAII CATG 3 cut(s) 257, 475, 857
CviQI GTAC 4 cut(s) 681, 1250, 1514, 1607
DdeI CTNAG 4 cut(s) 188, 345, 693, 875
DpnI GATC 4 cut(s) 763, 855, 1656, 1696
DpnII GATC 4 cut(s) 761, 853, 1654, 1694
EaeI YGGCCR 1 cut(s) 830
Eam1104I CTCTTC 3 cut(s) 475, 624, 1294
EarI CTCTTC 3 cut(s) 475, 624, 1294
Eco24I GRGCYC 1 cut(s) 522
Eco31I GGTCTC 2 cut(s) 642, 1314
Eco47I GGWCC 2 cut(s) 319, 1193
Eco57I CTGAAG 1 cut(s) 557
Eco88I CYCGRG 1 cut(s) 388
EcoRII CCWGG 1 cut(s) 1537
EcoT38I GRGCYC 1 cut(s) 522
Esp3I CGTCTC 1 cut(s) 333
FaeI CATG 3 cut(s) 260, 478, 860
FalI AAGNNNNNCTT 2 cut(s) 609, 641
FaqI GGGAC 1 cut(s) 469
FatI CATG 3 cut(s) 256, 474, 856
FauI CCCGC 1 cut(s) 309
Fnu4HI GCNGC 7 cut(s) 1020, 1043, 1095, 1308, 1442, 1494, 1543
FokI GGATG 1 cut(s) 1469
FriOI GRGCYC 1 cut(s) 522
Fsp4HI GCNGC 7 cut(s) 1020, 1043, 1095, 1308, 1442, 1494, 1543
FspBI CTAG 4 cut(s) 252, 765, 1157, 1517
GlaI GCGC 2 cut(s) 307, 386
GluI GCNGC 7 cut(s) 1020, 1043, 1095, 1308, 1442, 1494, 1543
GsaI CCCAGC 1 cut(s) 1034
GsuI CTGGAG 1 cut(s) 1257
HaeIII GGCC 5 cut(s) 193, 832, 1507, 1537, 1542
HapII CCGG 2 cut(s) 33, 1200
HgaI GACGC 1 cut(s) 350
HhaI GCGC 2 cut(s) 308, 387
Hin1II CATG 3 cut(s) 260, 478, 860
Hin6I GCGC 2 cut(s) 306, 385
HinP1I GCGC 2 cut(s) 306, 385
HincII GTYRAC 1 cut(s) 1010
HindII GTYRAC 1 cut(s) 1010
HindIII AAGCTT 1 cut(s) 813
HinfI GANTC 7 cut(s) 605, 808, 973, 1435, 1466, 1472, 1520
HpaII CCGG 2 cut(s) 33, 1200
HphI GGTGA 2 cut(s) 795, 1492
Hpy166II GTNNAC 3 cut(s) 543, 1010, 1250
Hpy188I TCNGA 7 cut(s) 101, 537, 561, 580, 645, 694, 1471
Hpy188III TCNNGA 5 cut(s) 175, 252, 759, 857, 1551
Hpy8I GTNNAC 3 cut(s) 543, 1010, 1250
Hpy99I CGWCG 1 cut(s) 645
HpyAV CCTTC 7 cut(s) 87, 605, 1032, 1362, 1471, 1577, 1581
HpyCH4III ACNGT 1 cut(s) 212
HpyCH4IV ACGT 1 cut(s) 163
HpyCH4V TGCA 6 cut(s) 299, 1132, 1229, 1382, 1493, 1701
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 829, 1241
HpyF3I CTNAG 4 cut(s) 188, 345, 693, 875
HpySE526I ACGT 1 cut(s) 163
Hsp92II CATG 3 cut(s) 260, 478, 860
HspAI GCGC 2 cut(s) 306, 385
Kzo9I GATC 4 cut(s) 761, 853, 1654, 1694
LmnI GCTCC 6 cut(s) 283, 919, 1105, 1136, 1160, 1304
Lsp1109I GCAGC 5 cut(s) 1006, 1081, 1319, 1428, 1505
LweI GCATC 3 cut(s) 972, 1081, 1369
MaeI CTAG 4 cut(s) 252, 765, 1157, 1517
MaeII ACGT 1 cut(s) 163
MaeIII GTNAC 7 cut(s) 269, 424, 484, 610, 739, 1167, 1421
MalI GATC 4 cut(s) 763, 855, 1656, 1696
MboI GATC 4 cut(s) 761, 853, 1654, 1694
MboII GAAGA 7 cut(s) 343, 492, 641, 1085, 1311, 1592, 1646
MfeI CAATTG 2 cut(s) 686, 1356
MhlI GDGCHC 3 cut(s) 522, 555, 1693
MlyI GAGTC 4 cut(s) 614, 802, 1466, 1475
MmeI TCCRAC 4 cut(s) 623, 1045, 1276, 1366
MseI TTAA 2 cut(s) 1143, 1329
MslI CAYNNNNRTG 2 cut(s) 548, 991
MspA1I CMGCKG 2 cut(s) 548, 1441
MspI CCGG 2 cut(s) 33, 1200
MspR9I CCNGG 3 cut(s) 34, 1200, 1539
MunI CAATTG 2 cut(s) 686, 1356
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 1 cut(s) 1539
MvnI CGCG 2 cut(s) 308, 669
MwoI GCNNNNNNNGC 3 cut(s) 305, 829, 1241
NciI CCSGG 2 cut(s) 34, 1200
NdeII GATC 4 cut(s) 761, 853, 1654, 1694
NlaIII CATG 3 cut(s) 260, 478, 860
NlaIV GGNNCC 4 cut(s) 285, 320, 570, 915
NmeAIII GCCGAG 1 cut(s) 890
NmuCI GTSAC 3 cut(s) 484, 739, 1421
OliI CACNNNNGTG 1 cut(s) 548
PagI TCATGA 1 cut(s) 856
PaqCI CACCTGC 1 cut(s) 1235
PcsI WCGNNNNNNNCGW 2 cut(s) 148, 1042
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 3 cut(s) 973, 1435, 1520
PfoI TCCNGGA 1 cut(s) 1198
PkrI GCNGC 7 cut(s) 1021, 1044, 1096, 1309, 1443, 1495, 1544
PleI GAGTC 4 cut(s) 613, 802, 1466, 1474
PpsI GAGTC 4 cut(s) 613, 802, 1466, 1474
PsiI TTATAA 1 cut(s) 654
Psp6I CCWGG 1 cut(s) 1537
PspFI CCCAGC 1 cut(s) 1030
PspGI CCWGG 1 cut(s) 1537
PspN4I GGNNCC 4 cut(s) 285, 320, 570, 915
PspPI GGNCC 3 cut(s) 319, 1193, 1506
PstNI CAGNNNCTG 2 cut(s) 1235, 1444
PvuII CAGCTG 2 cut(s) 548, 1441
RsaI GTAC 4 cut(s) 682, 1251, 1515, 1608
RsaNI GTAC 4 cut(s) 681, 1250, 1514, 1607
RseI CAYNNNNRTG 2 cut(s) 548, 991
SaqAI TTAA 2 cut(s) 1143, 1329
SatI GCNGC 7 cut(s) 1020, 1043, 1095, 1308, 1442, 1494, 1543
Sau3AI GATC 4 cut(s) 761, 853, 1654, 1694
Sau96I GGNCC 3 cut(s) 319, 1193, 1506
ScaI AGTACT 1 cut(s) 1515
SchI GAGTC 4 cut(s) 614, 802, 1466, 1475
ScrFI CCNGG 3 cut(s) 34, 1200, 1539
SduI GDGCHC 3 cut(s) 522, 555, 1693
SfaNI GCATC 3 cut(s) 972, 1081, 1369
SfcI CTRYAG 1 cut(s) 109
SinI GGWCC 2 cut(s) 319, 1193
SmiMI CAYNNNNRTG 2 cut(s) 548, 991
SmlI CTYRAG 2 cut(s) 810, 1549
SmoI CTYRAG 2 cut(s) 810, 1549
SsiI CCGC 4 cut(s) 316, 397, 1042, 1543
SspMI CTAG 4 cut(s) 252, 765, 1157, 1517
StyD4I CCNGG 3 cut(s) 32, 1198, 1537
TaaI ACNGT 1 cut(s) 212
TaiI ACGT 1 cut(s) 166
TaqI TCGA 4 cut(s) 760, 1036, 1475, 1693
TatI WGTACW 2 cut(s) 1513, 1606
TauI GCSGC 2 cut(s) 1045, 1545
TfiI GAWTC 3 cut(s) 973, 1435, 1520
Tru1I TTAA 2 cut(s) 1143, 1329
Tru9I TTAA 2 cut(s) 1143, 1329
TscAI CASTG 8 cut(s) 201, 217, 444, 780, 1236, 1267, 1279, 1674
TseFI GTSAC 3 cut(s) 484, 739, 1421
TseI GCWGC 5 cut(s) 1019, 1094, 1307, 1441, 1493
Tsp45I GTSAC 3 cut(s) 484, 739, 1421
TspDTI ATGAA 7 cut(s) 105, 215, 308, 431, 485, 1354, 1593
TspGWI ACGGA 3 cut(s) 121, 423, 1463
TspRI CASTG 8 cut(s) 201, 217, 444, 780, 1236, 1267, 1279, 1674
VpaK11BI GGWCC 2 cut(s) 319, 1193
XapI RAATTY 4 cut(s) 62, 661, 866, 1277
XbaI TCTAGA 1 cut(s) 251
XcmI CCANNNNNNNNNTGG 1 cut(s) 1279
XspI CTAG 4 cut(s) 252, 765, 1157, 1517
ZrmI AGTACT 1 cut(s) 1515
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.