Rh2DG593700

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0010382
Physical Location & Seq
Reverse (-)
82673804 .. 82677803
4000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG593700.1

Sequence Viewer

Length: 1353 bp
ATGGCTTGCTTTTCTGTTGTTTGCAATACTGGGTTTCACCCTGTTCATAATAATCTGGGAGTTCATGGTGGAAAGCCCAAGTCTTTAGGGAGATTCAGAGACTTTTGTTGTGATTCATTTGCTTTTAGTTCTCTAAGATTTGATAAAGGTTGCAACTTTCATCGTGGGTTGGTCTGGAACAGTGAGTTTTGGTCACTTAGTGATGGAAAAAGTGGAGCTCATTTACAGAGATATAGTAATTATGGTAATAAATCAAAACATGGGTTGCGTTGTTACAGCAAAGTTGGGCCACTGACAAATGAGAACAGTGCAAATAAGCAGATCAATTTGGGGAAAAAGGGTGGCAGTAATGTGAGGAAGAGGTTTTCATTAAGATTGCGTCCGAGGGTGCGGTTATTAGCTTTAAGATTGAGAAGAGTTTCAATCCAGTCGACATTGATTGATGTTGGGATCTTCTTGAGAAATAATAGAAGAAAAGTTACTCTTTTTACTTCGGTTTCGGTAGCATTGGGAATGTGCTATCTGTTTTTAAGGTTAACAGCAATCCCGTCTCCAAAAATGGTTCCGTATTCAGAATTGGTTACAAGCATACGGAATGAGTCTGTTTCGAAAGTTCTTCTCGAGGAGGGATCTCGTAGGATATATTATAACACACACTCTCCCATTGTTGGGAGTACTCAGTCGTCTAATGAAGAATTACCGAGTGATTGGATTGAGAATGTGGCTGATGAGGTTGCAAGTTATGATGGTCAACAATCCTGTCAAGCATTGAACCGGAATAAATTGAAGAAATTATCAGTGACTCGATCTTCAGCCCCCGAATGGCAGTTTTCCACCAGAAAAGTAGATCATGATGAGAAATTTCTTCTTAGTTTGATGAGAGAAAAAGGGATTACATATGGCTCAGCTCCTCAATCAGTGTTGATGTCAATGAGGACTACTTTGATAACGATAATATCTCTGTGGATTCCTTTGATGCCATTGATGTGGCTTCTTTATCGTCAACTTTCTGCTGCTAGTAGCCCAGCTAAAAAGCGGCGACCTGATAATCAGTTGGTTGGGTTTGACGATGTTGAGGGAGTTGATGCTGCCAAATTAGAGCTTATGGAGGGAATTGCAATGTCTAAAATATGTCAATCTATTACTTCCACAGGTGGTGAGAGCGTTACCAGAGAAGATGTAATGGAAGCAATTGAAAGAGCAAAGTTTGGAATCAATGATAAGCGACTTAGGCCTCCAAGAATAAGCAACGAGCTCGGGAAACTCTTCCCATGGATGCCTTCTCTGACGGGAAAGAATAATACAAGACAAGACGGAGCGCAAGGGCCACTAGGATACCAAACTCTGAGCTGA

Protein Analysis

450

Amino Acids

50.48

Weight (kDa)

9.88

Isoelectric Point (pI)

47.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FtsH_ext PF06480 166 - 305 3.4e-06 FtsH Extracellular
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 648
AccI GTMKAC 1 cut(s) 431
AciI CCGC 2 cut(s) 391, 1036
AclWI GGATC 2 cut(s) 458, 637
AcsI RAATTY 1 cut(s) 860
AcuI CTGAAG 1 cut(s) 795
AdeI CACNNNGTG 1 cut(s) 200
AfaI GTAC 1 cut(s) 676
AfiI CCNNNNNNNGG 3 cut(s) 668, 669, 822
AgsI TTSAA 4 cut(s) 423, 772, 787, 1196
AluBI AGCT 7 cut(s) 218, 401, 908, 1028, 1102, 1255, 1350
AluI AGCT 7 cut(s) 218, 401, 908, 1028, 1102, 1255, 1350
Alw21I GWGCWC 2 cut(s) 220, 1257
Alw26I GTCTC 2 cut(s) 93, 555
AlwI GGATC 2 cut(s) 458, 637
Ama87I CYCGRG 2 cut(s) 620, 1256
AoxI GGCC 3 cut(s) 287, 1232, 1325
ApeKI GCWGC 2 cut(s) 1013, 1088
ApoI RAATTY 1 cut(s) 860
Asp700I GAANNNNTTC 2 cut(s) 418, 1265
AspLEI GCGC 1 cut(s) 1321
AspS9I GGNCC 2 cut(s) 287, 1325
AsuHPI GGTGA 2 cut(s) 29, 1169
AsuII TTCGAA 1 cut(s) 608
AvaI CYCGRG 2 cut(s) 620, 1256
BanII GRGCYC 2 cut(s) 220, 1257
BarI GAAGNNNNNNTAC 2 cut(s) 463, 495
Bbv12I GWGCWC 2 cut(s) 220, 1257
BbvI GCAGC 2 cut(s) 1000, 1075
BccI CCATC 2 cut(s) 197, 740
BcgI CGANNNNNNTGC 2 cut(s) 1237, 1271
BciVI GTATCC 1 cut(s) 1328
BcoDI GTCTC 2 cut(s) 93, 555
BfaI CTAG 2 cut(s) 1017, 1331
BfuI GTATCC 1 cut(s) 1328
BisI GCNGC 3 cut(s) 1014, 1037, 1089
BlpI GCTNAGC 1 cut(s) 904
BlsI GCNGC 3 cut(s) 1015, 1038, 1090
BmcAI AGTACT 1 cut(s) 676
BmeT110I CYCGRG 2 cut(s) 620, 1256
BmgT120I GGNCC 2 cut(s) 287, 1325
BmiI GGNNCC 1 cut(s) 564
BmrI ACTGGG 1 cut(s) 39
BmsI GCATC 3 cut(s) 966, 1075, 1266
BmuI ACTGGG 1 cut(s) 39
Bpu1102I GCTNAGC 1 cut(s) 904
Bpu14I TTCGAA 1 cut(s) 608
BpuEI CTTGAG 1 cut(s) 478
BsaJI CCNNGG 2 cut(s) 383, 1271
BsaWI WCCGGW 1 cut(s) 774
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 3 cut(s) 668, 669, 822
Bse1I ACTGG 2 cut(s) 34, 427
Bse3DI GCAATG 1 cut(s) 1125
BseDI CCNNGG 2 cut(s) 383, 1271
BseGI GGATG 1 cut(s) 1281
BseLI CCNNNNNNNGG 3 cut(s) 668, 669, 822
BseMI GCAATG 1 cut(s) 1125
BseMII CTCAG 3 cut(s) 692, 918, 1337
BseNI ACTGG 2 cut(s) 34, 427
BseRI GAGGAG 2 cut(s) 638, 900
BseXI GCAGC 2 cut(s) 1000, 1075
BseYI CCCAGC 1 cut(s) 1024
BshFI GGCC 3 cut(s) 289, 1234, 1327
BsiHKAI GWGCWC 2 cut(s) 220, 1257
BsiHKCI CYCGRG 2 cut(s) 620, 1256
BsiSI CCGG 1 cut(s) 775
BslI CCNNNNNNNGG 3 cut(s) 668, 669, 822
BsmAI GTCTC 2 cut(s) 93, 555
BsmBI CGTCTC 1 cut(s) 555
BsnI GGCC 3 cut(s) 289, 1234, 1327
BsoBI CYCGRG 2 cut(s) 620, 1256
Bsp119I TTCGAA 1 cut(s) 608
Bsp1286I GDGCHC 2 cut(s) 220, 1257
Bsp143I GATC 5 cut(s) 321, 450, 629, 806, 847
Bsp1720I GCTNAGC 1 cut(s) 904
Bsp19I CCATGG 1 cut(s) 1271
BspACI CCGC 2 cut(s) 391, 1036
BspANI GGCC 3 cut(s) 289, 1234, 1327
BspCNI CTCAG 3 cut(s) 691, 917, 1338
BspHI TCATGA 1 cut(s) 850
BspLI GGNNCC 1 cut(s) 564
BspPI GGATC 2 cut(s) 458, 637
BspT104I TTCGAA 1 cut(s) 608
BsrDI GCAATG 1 cut(s) 1125
BsrI ACTGG 2 cut(s) 34, 427
BssECI CCNNGG 2 cut(s) 383, 1271
BssMI GATC 5 cut(s) 321, 450, 629, 806, 847
BssT1I CCWWGG 1 cut(s) 1271
Bst4CI ACNGT 2 cut(s) 182, 308
Bst6I CTCTTC 3 cut(s) 353, 409, 1271
BstBI TTCGAA 1 cut(s) 608
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 7 cut(s) 134, 197, 678, 869, 904, 1229, 1346
BstDSI CCRYGG 1 cut(s) 1271
BstF5I GGATG 1 cut(s) 1281
BstHHI GCGC 1 cut(s) 1321
BstKTI GATC 5 cut(s) 324, 453, 632, 809, 850
BstMAI GTCTC 2 cut(s) 93, 555
BstMBI GATC 5 cut(s) 321, 450, 629, 806, 847
BstMWI GCNNNNNNNGC 1 cut(s) 1231
BstV1I GCAGC 2 cut(s) 1000, 1075
BstX2I RGATCY 2 cut(s) 450, 629
BstXI CCANNNNNNTGG 1 cut(s) 987
BstYI RGATCY 2 cut(s) 450, 629
BsuI GTATCC 1 cut(s) 1328
BsuRI GGCC 3 cut(s) 289, 1234, 1327
BtgI CCRYGG 1 cut(s) 1271
BtsCI GGATG 1 cut(s) 1281
BtsIMutI CAGTG 5 cut(s) 187, 290, 313, 804, 924
Cac8I GCNNGC 1 cut(s) 7
CciI TCATGA 1 cut(s) 850
CfoI GCGC 1 cut(s) 1321
Cfr13I GGNCC 2 cut(s) 287, 1325
CseI GACGC 1 cut(s) 368
Csp6I GTAC 1 cut(s) 675
CviAII CATG 4 cut(s) 65, 260, 851, 1272
CviQI GTAC 1 cut(s) 675
DdeI CTNAG 7 cut(s) 134, 197, 678, 869, 904, 1229, 1346
DpnI GATC 5 cut(s) 323, 452, 631, 808, 849
DpnII GATC 5 cut(s) 321, 450, 629, 806, 847
DraIII CACNNNGTG 1 cut(s) 200
Eam1104I CTCTTC 3 cut(s) 353, 409, 1271
EarI CTCTTC 3 cut(s) 353, 409, 1271
Ecl136II GAGCTC 2 cut(s) 218, 1255
Eco130I CCWWGG 1 cut(s) 1271
Eco147I AGGCCT 1 cut(s) 1234
Eco24I GRGCYC 2 cut(s) 220, 1257
Eco53kI GAGCTC 2 cut(s) 218, 1255
Eco57I CTGAAG 1 cut(s) 795
Eco88I CYCGRG 2 cut(s) 620, 1256
EcoICRI GAGCTC 2 cut(s) 218, 1255
EcoT14I CCWWGG 1 cut(s) 1271
EcoT38I GRGCYC 2 cut(s) 220, 1257
ErhI CCWWGG 1 cut(s) 1271
Esp3I CGTCTC 1 cut(s) 555
FaeI CATG 4 cut(s) 68, 263, 854, 1275
FalI AAGNNNNNCTT 2 cut(s) 468, 500
FatI CATG 4 cut(s) 64, 259, 850, 1271
FauNDI CATATG 1 cut(s) 898
FblI GTMKAC 1 cut(s) 431
Fnu4HI GCNGC 3 cut(s) 1014, 1037, 1089
FokI GGATG 1 cut(s) 1288
FriOI GRGCYC 2 cut(s) 220, 1257
Fsp4HI GCNGC 3 cut(s) 1014, 1037, 1089
FspBI CTAG 2 cut(s) 1017, 1331
GlaI GCGC 1 cut(s) 1320
GluI GCNGC 3 cut(s) 1014, 1037, 1089
GsaI CCCAGC 1 cut(s) 1028
HaeIII GGCC 3 cut(s) 289, 1234, 1327
HapII CCGG 1 cut(s) 775
HgaI GACGC 1 cut(s) 368
HhaI GCGC 1 cut(s) 1321
Hin1II CATG 4 cut(s) 68, 263, 854, 1275
Hin6I GCGC 1 cut(s) 1319
HinP1I GCGC 1 cut(s) 1319
HincII GTYRAC 4 cut(s) 432, 537, 752, 1004
HindII GTYRAC 4 cut(s) 432, 537, 752, 1004
HinfI GANTC 6 cut(s) 93, 113, 599, 802, 967, 1212
HpaI GTTAAC 1 cut(s) 537
HpaII CCGG 1 cut(s) 775
HphI GGTGA 2 cut(s) 29, 1169
Hpy166II GTNNAC 4 cut(s) 432, 537, 752, 1004
Hpy188I TCNGA 5 cut(s) 98, 384, 574, 1287, 1347
Hpy188III TCNNGA 5 cut(s) 175, 457, 620, 851, 1258
Hpy8I GTNNAC 4 cut(s) 432, 537, 752, 1004
HpyAV CCTTC 1 cut(s) 1290
HpyCH4III ACNGT 2 cut(s) 182, 308
HpyCH4V TGCA 5 cut(s) 24, 153, 311, 737, 1118
HpyF10VI GCNNNNNNNGC 1 cut(s) 1231
HpyF3I CTNAG 7 cut(s) 134, 197, 678, 869, 904, 1229, 1346
Hsp92II CATG 4 cut(s) 68, 263, 854, 1275
HspAI GCGC 1 cut(s) 1319
KspAI GTTAAC 1 cut(s) 537
Kzo9I GATC 5 cut(s) 321, 450, 629, 806, 847
LmnI GCTCC 3 cut(s) 215, 913, 1316
Lsp1109I GCAGC 2 cut(s) 1000, 1075
LweI GCATC 3 cut(s) 966, 1075, 1266
MaeI CTAG 2 cut(s) 1017, 1331
MaeIII GTNAC 6 cut(s) 192, 272, 478, 580, 799, 1165
MalI GATC 5 cut(s) 323, 452, 631, 808, 849
MboI GATC 5 cut(s) 321, 450, 629, 806, 847
MfeI CAATTG 1 cut(s) 1191
MflI RGATCY 2 cut(s) 450, 629
MhlI GDGCHC 2 cut(s) 220, 1257
MlyI GAGTC 2 cut(s) 608, 796
MroXI GAANNNNTTC 2 cut(s) 418, 1265
MseI TTAA 4 cut(s) 371, 404, 530, 536
MslI CAYNNNNRTG 1 cut(s) 985
MspI CCGG 1 cut(s) 775
MunI CAATTG 1 cut(s) 1191
MwoI GCNNNNNNNGC 1 cut(s) 1231
NcoI CCATGG 1 cut(s) 1271
NdeI CATATG 1 cut(s) 898
NdeII GATC 5 cut(s) 321, 450, 629, 806, 847
NlaIII CATG 4 cut(s) 68, 263, 854, 1275
NlaIV GGNNCC 1 cut(s) 564
NmuCI GTSAC 2 cut(s) 192, 799
NspV TTCGAA 1 cut(s) 608
PaeR7I CTCGAG 1 cut(s) 620
PagI TCATGA 1 cut(s) 850
PceI AGGCCT 1 cut(s) 1234
PdmI GAANNNNTTC 2 cut(s) 418, 1265
PfeI GAWTC 4 cut(s) 93, 113, 967, 1212
PkrI GCNGC 3 cut(s) 1015, 1038, 1090
PleI GAGTC 2 cut(s) 607, 796
PpsI GAGTC 2 cut(s) 607, 796
PsiI TTATAA 1 cut(s) 648
Psp124BI GAGCTC 2 cut(s) 220, 1257
PspFI CCCAGC 1 cut(s) 1024
PspN4I GGNNCC 1 cut(s) 564
PspPI GGNCC 2 cut(s) 287, 1325
PsuI RGATCY 2 cut(s) 450, 629
RsaI GTAC 1 cut(s) 676
RsaNI GTAC 1 cut(s) 675
RseI CAYNNNNRTG 1 cut(s) 985
SacI GAGCTC 2 cut(s) 220, 1257
SalI GTCGAC 1 cut(s) 430
SaqAI TTAA 4 cut(s) 371, 404, 530, 536
SatI GCNGC 3 cut(s) 1014, 1037, 1089
Sau3AI GATC 5 cut(s) 321, 450, 629, 806, 847
Sau96I GGNCC 2 cut(s) 287, 1325
ScaI AGTACT 1 cut(s) 676
SchI GAGTC 2 cut(s) 608, 796
SduI GDGCHC 2 cut(s) 220, 1257
SfaNI GCATC 3 cut(s) 966, 1075, 1266
Sfr274I CTCGAG 1 cut(s) 620
SfuI TTCGAA 1 cut(s) 608
SlaI CTCGAG 1 cut(s) 620
SmiMI CAYNNNNRTG 1 cut(s) 985
SmlI CTYRAG 2 cut(s) 457, 620
SmoI CTYRAG 2 cut(s) 457, 620
SseBI AGGCCT 1 cut(s) 1234
SsiI CCGC 2 cut(s) 391, 1036
SspMI CTAG 2 cut(s) 1017, 1331
SstI GAGCTC 2 cut(s) 220, 1257
StuI AGGCCT 1 cut(s) 1234
StyI CCWWGG 1 cut(s) 1271
TaaI ACNGT 2 cut(s) 182, 308
TaqI TCGA 4 cut(s) 431, 608, 621, 805
TatI WGTACW 1 cut(s) 674
TauI GCSGC 1 cut(s) 1039
TfiI GAWTC 4 cut(s) 93, 113, 967, 1212
Tru1I TTAA 4 cut(s) 371, 404, 530, 536
Tru9I TTAA 4 cut(s) 371, 404, 530, 536
TscAI CASTG 5 cut(s) 187, 297, 313, 804, 924
TseFI GTSAC 2 cut(s) 192, 799
TseI GCWGC 2 cut(s) 1013, 1088
Tsp45I GTSAC 2 cut(s) 192, 799
TspDTI ATGAA 6 cut(s) 35, 53, 105, 149, 357, 705
TspGWI ACGGA 3 cut(s) 555, 607, 1329
TspRI CASTG 5 cut(s) 187, 297, 313, 804, 924
XapI RAATTY 1 cut(s) 860
XhoI CTCGAG 1 cut(s) 620
XmiI GTMKAC 1 cut(s) 431
XmnI GAANNNNTTC 2 cut(s) 418, 1265
XspI CTAG 2 cut(s) 1017, 1331
ZrmI AGTACT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.