Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0004538

Physical Location & Seq

Genomic Coordinates Forward (+)

63644442 .. 63649545

Gene Structure 5104 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0505100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGTGGGATTATCTATAGGAGAGAAGTATTTCATACAGGGTGGCATTGCTCAGGACCTTCGCACTGATGGTCGGAAAAGATTGACGCCTAGACCCATCTTTGTTGAAACTGGAGTCATTTCCCAGTCAAATGGTTCAGCAAGGGTCAGGATTGGTGCCACAGAAGTCATTGCCAGTGTGAAGGCTGAACTTGGAAGGCCGAGCGCATTGCATCCTGACAAAGGAAAAGTCTCTATAAATGTTGATTGCAGTCCAACTGCAGCACCAATGTTTGAGGGTAGAGGGGGTGAGGAGCTGTCCGCAGAACTCTCAGTTGCTCTTCAGCGTTGTCTATTAGGTGGTAAAAGTGGATCAGGTGCTGGAATTGACCTCTCTTCTCTGGCAATTGTGGAAGGAAAGATTTGTTGGGATCTTTACATTGAAGGCCTTGTTGTTAGTTCAGACGGAAATCTACTAGATGCCCTAGGTGCTGCTATTAAGGCTGCTTTGAGCAATACAGGCATCCCAAGAGTAAATGTTGCAGCTGGTGCATCAGGAGATGAGCAACCAGAGGTTGACGTAAGCGACGAGGAATTTCTGCAATTTGACACATCCAAGGTCCCTGTCATTGTTACATTAACGAAGGTAGGCAGGCACTATATTGTAGATGCCACATCAGAAGAGGAATCCCAAATGAGCTCAGCTGTTTCTATTTCAGTCAACAGGCAAGGGAACATATGTGGGTTGACAAAAAGGGGTGGTGCAGGCCTAGATCCAAGCGTCATTCTTGACATGATATCTGTAGCACAAAGTGTAAGTGAGAGGCTGATAAACACATTGGATTCTCAGATAGCTGCGGCTGAAGCTGGTGAAGATGAGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AdoMetDC_leader

Protein Analysis

287

Amino Acids

29.81

Weight (kDa)

4.68

Isoelectric Point (pI)

36.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNase_PH	PF01138	31 - 169	1e-24	3' exoribonuclease family, domain 1
RNase_PH_C	PF03725	200 - 264	1.2e-13	3' exoribonuclease family, domain 2

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004538)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g28640
malus_domestica	MD09G1079900.v1.1 MD17G1070400.v1.1
prunus_persica	Prupe.1G299600_v2.0.a1 Prupe.3G243800_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0350481 RchiOBHm_Chr2g0163951 RchiOBHm_Chr4g0408541 RchiOBHm_Chr4g0436751 RchiOBHm_Chr7g0221071
rosa_laevigata	RLG00000021428
rosa_multiflora	Rmu_sc0009359.1_g000001 Rmu_ssc0000432.1_g000024
rosa_roxburghii	Rroxscaffold_2G00086900 Rroxscaffold_5G00358420
rosa_rugosa	Rorug02G0505100 Rorug03G0283900 Rorug04G0295800
rosa_samantha	Rh2BG373000 Rh2BG584500 Rh2CG309800 Rh2CG555400 Rh2DG349200 Rh4AG350200 Rh4BG359000 Rh4CG373400 Rh4DG353100 Rh5AG084500 Rh5CG494100 Rh6BG085300
rosa_wichuraiana	Rw2G047450 Rw4G030640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AciI	CCGC	2 cut(s)	300, 836
AclWI	GGATC	3 cut(s)	358, 417, 746
AcsI	RAATTY	1 cut(s)	572
AcuI	CTGAAG	2 cut(s)	305, 861
AcyI	GRCGYC	1 cut(s)	86
AdeI	CACNNNGTG	1 cut(s)	791
AfiI	CCNNNNNNNGG	1 cut(s)	221
AgsI	TTSAA	2 cut(s)	107, 422
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	6 cut(s)	295, 524, 678, 683, 833, 845
AluI	AGCT	6 cut(s)	295, 524, 678, 683, 833, 845
Alw21I	GWGCWC	1 cut(s)	680
Alw26I	GTCTC	1 cut(s)	235
AlwI	GGATC	3 cut(s)	358, 417, 746
AlwNI	CAGNNNCTG	1 cut(s)	359
AoxI	GGCC	3 cut(s)	197, 424, 745
ApeKI	GCWGC	5 cut(s)	260, 470, 482, 521, 833
ApoI	RAATTY	1 cut(s)	572
ArsI	GACNNNNNNTTYG	2 cut(s)	213, 245
Asp700I	GAANNNNTTC	1 cut(s)	29
AspA2I	CCTAGG	1 cut(s)	463
AspLEI	GCGC	1 cut(s)	206
AspS9I	GGNCC	2 cut(s)	55, 598
AsuHPI	GGTGA	2 cut(s)	299, 860
AvaII	GGWCC	2 cut(s)	55, 598
AvrII	CCTAGG	1 cut(s)	463
BanI	GGYRCC	1 cut(s)	155
BanII	GRGCYC	1 cut(s)	680
Bbv12I	GWGCWC	1 cut(s)	680
BbvI	GCAGC	5 cut(s)	272, 457, 469, 533, 820
BccI	CCATC	2 cut(s)	62, 104
BcgI	CGANNNNNNTGC	2 cut(s)	190, 224
BcoDI	GTCTC	1 cut(s)	235
BfaI	CTAG	4 cut(s)	90, 455, 464, 749
BfmI	CTRYAG	3 cut(s)	15, 258, 780
BisI	GCNGC	6 cut(s)	261, 471, 483, 522, 834, 837
BlnI	CCTAGG	1 cut(s)	463
BlpI	GCTNAGC	1 cut(s)	679
BlsI	GCNGC	6 cut(s)	262, 472, 484, 523, 835, 838
Bme18I	GGWCC	2 cut(s)	55, 598
BmgT120I	GGNCC	2 cut(s)	55, 598
BmiI	GGNNCC	2 cut(s)	157, 600
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	5 cut(s)	220, 448, 510, 539, 637
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	1 cut(s)	132
Bpu10I	CCTNAGC	1 cut(s)	51
Bpu1102I	GCTNAGC	1 cut(s)	679
BsaHI	GRCGYC	1 cut(s)	86
BsaJI	CCNNGG	2 cut(s)	463, 594
Bsc4I	CCNNNNNNNGG	1 cut(s)	221
Bse1I	ACTGG	3 cut(s)	115, 124, 174
Bse3DI	GCAATG	3 cut(s)	45, 168, 206
BseDI	CCNNGG	2 cut(s)	463, 594
BseGI	GGATG	3 cut(s)	211, 501, 590
BseLI	CCNNNNNNNGG	1 cut(s)	221
BseMI	GCAATG	3 cut(s)	45, 168, 206
BseMII	CTCAG	4 cut(s)	65, 324, 693, 839
BseNI	ACTGG	3 cut(s)	115, 124, 174
BseRI	GAGGAG	1 cut(s)	305
BseXI	GCAGC	5 cut(s)	272, 457, 469, 533, 820
BsgI	GTGCAG	1 cut(s)	762
BshFI	GGCC	3 cut(s)	199, 426, 747
BshNI	GGYRCC	1 cut(s)	155
BsiHKAI	GWGCWC	1 cut(s)	680
BslFI	GGGAC	1 cut(s)	584
BslI	CCNNNNNNNGG	1 cut(s)	221
BsmAI	GTCTC	1 cut(s)	235
BsmFI	GGGAC	1 cut(s)	584
BsnI	GGCC	3 cut(s)	199, 426, 747
Bsp1286I	GDGCHC	1 cut(s)	680
Bsp143I	GATC	3 cut(s)	350, 409, 751
Bsp1720I	GCTNAGC	1 cut(s)	679
BspACI	CCGC	2 cut(s)	300, 836
BspANI	GGCC	3 cut(s)	199, 426, 747
BspCNI	CTCAG	4 cut(s)	64, 323, 692, 838
BspLI	GGNNCC	2 cut(s)	157, 600
BspMAI	CTGCAG	1 cut(s)	262
BspPI	GGATC	3 cut(s)	358, 417, 746
BspQI	GCTCTTC	1 cut(s)	324
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	3 cut(s)	45, 168, 206
BsrI	ACTGG	3 cut(s)	115, 124, 174
BssECI	CCNNGG	2 cut(s)	463, 594
BssMI	GATC	3 cut(s)	350, 409, 751
BssNI	GRCGYC	1 cut(s)	86
BssT1I	CCWWGG	2 cut(s)	463, 594
Bst6I	CTCTTC	3 cut(s)	324, 379, 654
BstACI	GRCGYC	1 cut(s)	86
BstAPI	GCANNNNNTGC	1 cut(s)	527
BstC8I	GCNNGC	2 cut(s)	632, 745
BstDEI	CTNAG	4 cut(s)	51, 310, 679, 825
BstENI	CCTNNNNNAGG	1 cut(s)	219
BstF5I	GGATG	3 cut(s)	211, 501, 590
BstHHI	GCGC	1 cut(s)	206
BstKTI	GATC	3 cut(s)	353, 412, 754
BstMAI	GTCTC	1 cut(s)	235
BstMBI	GATC	3 cut(s)	350, 409, 751
BstMWI	GCNNNNNNNGC	5 cut(s)	467, 479, 498, 527, 842
BstSFI	CTRYAG	3 cut(s)	15, 258, 780
BstV1I	GCAGC	5 cut(s)	272, 457, 469, 533, 820
BstX2I	RGATCY	2 cut(s)	409, 751
BstXI	CCANNNNNNTGG	1 cut(s)	131
BstYI	RGATCY	2 cut(s)	409, 751
BsuRI	GGCC	3 cut(s)	199, 426, 747
BtsCI	GGATG	3 cut(s)	211, 501, 590
BtsIMutI	CAGTG	2 cut(s)	63, 181
Cac8I	GCNNGC	2 cut(s)	632, 745
CaiI	CAGNNNCTG	1 cut(s)	359
CfoI	GCGC	1 cut(s)	206
Cfr13I	GGNCC	2 cut(s)	55, 598
CseI	GACGC	2 cut(s)	94, 748
CviAII	CATG	1 cut(s)	772
DdeI	CTNAG	4 cut(s)	51, 310, 679, 825
DpnI	GATC	3 cut(s)	352, 411, 753
DpnII	GATC	3 cut(s)	350, 409, 751
DraIII	CACNNNGTG	1 cut(s)	791
Eam1104I	CTCTTC	3 cut(s)	324, 379, 654
EarI	CTCTTC	3 cut(s)	324, 379, 654
Ecl136II	GAGCTC	1 cut(s)	678
Eco130I	CCWWGG	2 cut(s)	463, 594
Eco147I	AGGCCT	2 cut(s)	426, 747
Eco24I	GRGCYC	1 cut(s)	680
Eco32I	GATATC	1 cut(s)	777
Eco47I	GGWCC	2 cut(s)	55, 598
Eco53kI	GAGCTC	1 cut(s)	678
Eco57I	CTGAAG	2 cut(s)	305, 861
EcoICRI	GAGCTC	1 cut(s)	678
EcoNI	CCTNNNNNAGG	1 cut(s)	219
EcoO109I	RGGNCCY	2 cut(s)	55, 598
EcoRV	GATATC	1 cut(s)	777
EcoT14I	CCWWGG	2 cut(s)	463, 594
EcoT38I	GRGCYC	1 cut(s)	680
ErhI	CCWWGG	2 cut(s)	463, 594
FaeI	CATG	1 cut(s)	775
FaiI	YATR	7 cut(s)	17, 35, 236, 639, 716, 718, 773
FaqI	GGGAC	1 cut(s)	584
FatI	CATG	1 cut(s)	771
FauNDI	CATATG	1 cut(s)	716
Fnu4HI	GCNGC	6 cut(s)	261, 471, 483, 522, 834, 837
FokI	GGATG	3 cut(s)	198, 488, 577
FriOI	GRGCYC	1 cut(s)	680
Fsp4HI	GCNGC	6 cut(s)	261, 471, 483, 522, 834, 837
FspBI	CTAG	4 cut(s)	90, 455, 464, 749
GlaI	GCGC	1 cut(s)	205
GluI	GCNGC	6 cut(s)	261, 471, 483, 522, 834, 837
GsuI	CTGGAG	1 cut(s)	132
HaeIII	GGCC	3 cut(s)	199, 426, 747
HgaI	GACGC	2 cut(s)	94, 748
HhaI	GCGC	1 cut(s)	206
Hin1I	GRCGYC	1 cut(s)	86
Hin1II	CATG	1 cut(s)	775
Hin6I	GCGC	1 cut(s)	204
HinP1I	GCGC	1 cut(s)	204
HincII	GTYRAC	3 cut(s)	556, 700, 726
HindII	GTYRAC	3 cut(s)	556, 700, 726
HinfI	GANTC	3 cut(s)	114, 665, 821
HphI	GGTGA	2 cut(s)	299, 860
Hpy166II	GTNNAC	3 cut(s)	556, 700, 726
Hpy188I	TCNGA	4 cut(s)	75, 442, 658, 828
Hpy188III	TCNNGA	5 cut(s)	53, 148, 215, 534, 767
Hpy8I	GTNNAC	3 cut(s)	556, 700, 726
Hpy99I	CGWCG	1 cut(s)	569
HpyAV	CCTTC	6 cut(s)	68, 175, 189, 386, 416, 616
HpyCH4IV	ACGT	1 cut(s)	558
HpyCH4V	TGCA	7 cut(s)	211, 249, 260, 521, 530, 580, 743
HpyF10VI	GCNNNNNNNGC	5 cut(s)	467, 479, 498, 527, 842
HpyF3I	CTNAG	4 cut(s)	51, 310, 679, 825
HpySE526I	ACGT	1 cut(s)	558
Hsp92I	GRCGYC	1 cut(s)	86
Hsp92II	CATG	1 cut(s)	775
HspAI	GCGC	1 cut(s)	204
Kzo9I	GATC	3 cut(s)	350, 409, 751
LguI	GCTCTTC	1 cut(s)	324
LmnI	GCTCC	1 cut(s)	292
Lsp1109I	GCAGC	5 cut(s)	272, 457, 469, 533, 820
LweI	GCATC	5 cut(s)	220, 448, 510, 539, 637
MaeI	CTAG	4 cut(s)	90, 455, 464, 749
MaeII	ACGT	1 cut(s)	558
MaeIII	GTNAC	1 cut(s)	610
MalI	GATC	3 cut(s)	352, 411, 753
MboI	GATC	3 cut(s)	350, 409, 751
MboII	GAAGA	4 cut(s)	311, 366, 671, 863
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	2 cut(s)	409, 751
MhlI	GDGCHC	1 cut(s)	680
MluCI	AATT	4 cut(s)	363, 384, 572, 581
MlyI	GAGTC	1 cut(s)	123
MmeI	TCCRAC	2 cut(s)	53, 278
MnlI	CCTC	8 cut(s)	268, 275, 283, 380, 544, 562, 655, 795
MroXI	GAANNNNTTC	1 cut(s)	29
MseI	TTAA	2 cut(s)	477, 617
MspA1I	CMGCKG	2 cut(s)	524, 683
MunI	CAATTG	1 cut(s)	384
MwoI	GCNNNNNNNGC	5 cut(s)	467, 479, 498, 527, 842
NdeI	CATATG	1 cut(s)	716
NdeII	GATC	3 cut(s)	350, 409, 751
NlaIII	CATG	1 cut(s)	775
NlaIV	GGNNCC	2 cut(s)	157, 600
NmeAIII	GCCGAG	1 cut(s)	225
PceI	AGGCCT	2 cut(s)	426, 747
PciSI	GCTCTTC	1 cut(s)	324
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PdmI	GAANNNNTTC	1 cut(s)	29
PfeI	GAWTC	2 cut(s)	665, 821
PkrI	GCNGC	6 cut(s)	262, 472, 484, 523, 835, 838
PleI	GAGTC	1 cut(s)	122
PpsI	GAGTC	1 cut(s)	122
PpuMI	RGGWCCY	2 cut(s)	55, 598
Psp124BI	GAGCTC	1 cut(s)	680
Psp5II	RGGWCCY	2 cut(s)	55, 598
PspN4I	GGNNCC	2 cut(s)	157, 600
PspPI	GGNCC	2 cut(s)	55, 598
PspPPI	RGGWCCY	2 cut(s)	55, 598
PstI	CTGCAG	1 cut(s)	262
PstNI	CAGNNNCTG	1 cut(s)	359
PsuI	RGATCY	2 cut(s)	409, 751
PvuII	CAGCTG	2 cut(s)	524, 683
SacI	GAGCTC	1 cut(s)	680
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	2 cut(s)	477, 617
SatI	GCNGC	6 cut(s)	261, 471, 483, 522, 834, 837
Sau3AI	GATC	3 cut(s)	350, 409, 751
Sau96I	GGNCC	2 cut(s)	55, 598
SchI	GAGTC	1 cut(s)	123
SduI	GDGCHC	1 cut(s)	680
SfaNI	GCATC	5 cut(s)	220, 448, 510, 539, 637
SfcI	CTRYAG	3 cut(s)	15, 258, 780
SinI	GGWCC	2 cut(s)	55, 598
Sse9I	AATT	4 cut(s)	363, 384, 572, 581
SseBI	AGGCCT	2 cut(s)	426, 747
SsiI	CCGC	2 cut(s)	300, 836
SspMI	CTAG	4 cut(s)	90, 455, 464, 749
SstI	GAGCTC	1 cut(s)	680
StuI	AGGCCT	2 cut(s)	426, 747
StyI	CCWWGG	2 cut(s)	463, 594
TaiI	ACGT	1 cut(s)	561
TasI	AATT	4 cut(s)	363, 384, 572, 581
TauI	GCSGC	1 cut(s)	839
TfiI	GAWTC	2 cut(s)	665, 821
Tru1I	TTAA	2 cut(s)	477, 617
Tru9I	TTAA	2 cut(s)	477, 617
TscAI	CASTG	2 cut(s)	70, 181
TseI	GCWGC	5 cut(s)	260, 470, 482, 521, 833
TspDTI	ATGAA	1 cut(s)	22
TspGWI	ACGGA	1 cut(s)	459
TspRI	CASTG	2 cut(s)	70, 181
VpaK11BI	GGWCC	2 cut(s)	55, 598
XagI	CCTNNNNNAGG	1 cut(s)	219
XapI	RAATTY	1 cut(s)	572
XmaJI	CCTAGG	1 cut(s)	463
XmnI	GAANNNNTTC	1 cut(s)	29
XspI	CTAG	4 cut(s)	90, 455, 464, 749

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.