Rroxscaffold_2G00086900

S-adenosyl-l-methionine decarboxylase leader peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0004538
Physical Location & Seq
Reverse (-)
9036994 .. 9038687
1694 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00086900.1

Sequence Viewer

Length: 351 bp
ATGTGGGCCAGCGCCATGCAAGACAAGCGTGGAATGGATCAAGAAGAAGGCAAAATGACAAAAAAGGCCAGCTCACAGCATCAGACTGGGTTTCCATTATCTTGGTCGCCGTCCCAAAATTTCGAATCTTTAGGTTTTGATTTGGAGGTTTCAAAGGGGGATCTTCGAAGGAGGTATAAACTGAATGAGCTAATGGAGTCAAAAGGTGGGAAAAAGAAGTCTAGCAGTAGTAAATCCTCATTATTCTACGAAGCTCCCCTAGGATACAGCATTGAAGACGTCAGACCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCATACTCTAACTGCGTGCGAAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AdoMetDC_leader

Protein Analysis

116

Amino Acids

13.06

Weight (kDa)

9.71

Isoelectric Point (pI)

60.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 65 - 116 5.6e-34 S-adenosyl-l-methionine decarboxylase leader peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 282
AclWI GGATC 2 cut(s) 45, 168
AcsI RAATTY 2 cut(s) 118, 305
AcyI GRCGYC 1 cut(s) 279
AfiI CCNNNNNNNGG 1 cut(s) 293
AgsI TTSAA 2 cut(s) 153, 275
AluBI AGCT 4 cut(s) 72, 190, 254, 317
AluI AGCT 4 cut(s) 72, 190, 254, 317
AlwI GGATC 2 cut(s) 45, 168
AoxI GGCC 2 cut(s) 6, 66
ApeKI GCWGC 1 cut(s) 317
ApoI RAATTY 2 cut(s) 118, 305
AspA2I CCTAGG 1 cut(s) 259
AspLEI GCGC 1 cut(s) 14
AspS9I GGNCC 1 cut(s) 6
AsuII TTCGAA 2 cut(s) 123, 166
AvrII CCTAGG 1 cut(s) 259
BbsI GAAGAC 1 cut(s) 282
BbvI GCAGC 1 cut(s) 304
BceAI ACGGC 1 cut(s) 94
BciVI GTATCC 1 cut(s) 257
BfaI CTAG 2 cut(s) 222, 260
BfoI RGCGCY 1 cut(s) 15
BfuI GTATCC 1 cut(s) 257
BisI GCNGC 1 cut(s) 318
BlnI CCTAGG 1 cut(s) 259
BlsI GCNGC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 6
BmrI ACTGGG 1 cut(s) 96
BmsI GCATC 1 cut(s) 88
BmuI ACTGGG 1 cut(s) 96
BpiI GAAGAC 1 cut(s) 282
Bpu14I TTCGAA 2 cut(s) 123, 166
BsaHI GRCGYC 1 cut(s) 279
BsaJI CCNNGG 1 cut(s) 259
Bsc4I CCNNNNNNNGG 1 cut(s) 293
Bse1I ACTGG 1 cut(s) 91
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 344
BseLI CCNNNNNNNGG 1 cut(s) 293
BseNI ACTGG 1 cut(s) 91
BseXI GCAGC 1 cut(s) 304
BshFI GGCC 2 cut(s) 8, 68
BslFI GGGAC 1 cut(s) 97
BslI CCNNNNNNNGG 1 cut(s) 293
BsmFI GGGAC 1 cut(s) 97
BsnI GGCC 2 cut(s) 8, 68
Bsp119I TTCGAA 2 cut(s) 123, 166
Bsp143I GATC 3 cut(s) 37, 160, 311
BspANI GGCC 2 cut(s) 8, 68
BspPI GGATC 2 cut(s) 45, 168
BspT104I TTCGAA 2 cut(s) 123, 166
BsrI ACTGG 1 cut(s) 91
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 3 cut(s) 37, 160, 311
BssNI GRCGYC 1 cut(s) 279
BssT1I CCWWGG 1 cut(s) 259
Bst4CI ACNGT 1 cut(s) 293
BstACI GRCGYC 1 cut(s) 279
BstBI TTCGAA 2 cut(s) 123, 166
BstC8I GCNNGC 3 cut(s) 10, 70, 335
BstF5I GGATG 1 cut(s) 344
BstH2I RGCGCY 1 cut(s) 15
BstHHI GCGC 1 cut(s) 14
BstKTI GATC 3 cut(s) 40, 163, 314
BstMBI GATC 3 cut(s) 37, 160, 311
BstMWI GCNNNNNNNGC 1 cut(s) 25
BstV1I GCAGC 1 cut(s) 304
BstV2I GAAGAC 1 cut(s) 282
BstX2I RGATCY 1 cut(s) 160
BstXI CCANNNNNNTGG 1 cut(s) 102
BstYI RGATCY 1 cut(s) 160
BsuI GTATCC 1 cut(s) 257
BsuRI GGCC 2 cut(s) 8, 68
BtsCI GGATG 1 cut(s) 344
Cac8I GCNNGC 3 cut(s) 10, 70, 335
CfoI GCGC 1 cut(s) 14
Cfr13I GGNCC 1 cut(s) 6
CviAII CATG 1 cut(s) 16
CviJI RGCY 7 cut(s) 8, 68, 72, 190, 254, 317, 343
CviKI_1 RGCY 7 cut(s) 8, 68, 72, 190, 254, 317, 343
DpnI GATC 3 cut(s) 39, 162, 313
DpnII GATC 3 cut(s) 37, 160, 311
Eco130I CCWWGG 1 cut(s) 259
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 19
FaiI YATR 3 cut(s) 17, 177, 322
FaqI GGGAC 1 cut(s) 97
FatI CATG 1 cut(s) 15
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 1 cut(s) 331
Fsp4HI GCNGC 1 cut(s) 318
FspBI CTAG 2 cut(s) 222, 260
GlaI GCGC 1 cut(s) 13
GluI GCNGC 1 cut(s) 318
HaeII RGCGCY 1 cut(s) 15
HaeIII GGCC 2 cut(s) 8, 68
HhaI GCGC 1 cut(s) 14
Hin1I GRCGYC 1 cut(s) 279
Hin1II CATG 1 cut(s) 19
Hin6I GCGC 1 cut(s) 12
HinP1I GCGC 1 cut(s) 12
HinfI GANTC 3 cut(s) 125, 197, 297
Hpy188I TCNGA 3 cut(s) 84, 284, 311
Hpy188III TCNNGA 3 cut(s) 41, 301, 348
HpyAV CCTTC 2 cut(s) 41, 162
HpyCH4III ACNGT 1 cut(s) 293
HpyCH4IV ACGT 1 cut(s) 279
HpyCH4V TGCA 2 cut(s) 19, 320
HpyF10VI GCNNNNNNNGC 1 cut(s) 25
HpySE526I ACGT 1 cut(s) 279
Hsp92I GRCGYC 1 cut(s) 279
Hsp92II CATG 1 cut(s) 19
HspAI GCGC 1 cut(s) 12
Kzo9I GATC 3 cut(s) 37, 160, 311
LmnI GCTCC 1 cut(s) 259
LpnPI CCDG 3 cut(s) 22, 72, 82
Lsp1109I GCAGC 1 cut(s) 304
LweI GCATC 1 cut(s) 88
MaeI CTAG 2 cut(s) 222, 260
MaeII ACGT 1 cut(s) 279
MalI GATC 3 cut(s) 39, 162, 313
MboI GATC 3 cut(s) 37, 160, 311
MboII GAAGA 3 cut(s) 56, 155, 287
MflI RGATCY 1 cut(s) 160
MluCI AATT 2 cut(s) 118, 305
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 4 cut(s) 139, 165, 247, 297
MspA1I CMGCKG 1 cut(s) 317
MwoI GCNNNNNNNGC 1 cut(s) 25
NdeII GATC 3 cut(s) 37, 160, 311
NlaIII CATG 1 cut(s) 19
NspV TTCGAA 2 cut(s) 123, 166
PfeI GAWTC 2 cut(s) 125, 297
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
PspPI GGNCC 1 cut(s) 6
PsuI RGATCY 1 cut(s) 160
PvuII CAGCTG 1 cut(s) 317
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 37, 160, 311
Sau96I GGNCC 1 cut(s) 6
SchI GAGTC 1 cut(s) 206
SfaNI GCATC 1 cut(s) 88
SfuI TTCGAA 2 cut(s) 123, 166
Sse9I AATT 2 cut(s) 118, 305
SspMI CTAG 2 cut(s) 222, 260
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 293
TaiI ACGT 1 cut(s) 282
TaqI TCGA 2 cut(s) 123, 166
TasI AATT 2 cut(s) 118, 305
TfiI GAWTC 2 cut(s) 125, 297
TseI GCWGC 1 cut(s) 317
XapI RAATTY 2 cut(s) 118, 305
XmaJI CCTAGG 1 cut(s) 259
XspI CTAG 2 cut(s) 222, 260
ZraI GACGTC 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.