Rh2CG309800

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004538
Physical Location & Seq
Forward (+)
38976596 .. 38977115
520 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG309800.1

Sequence Viewer

Length: 309 bp
ATGCAAGTCGACGATAACCTAAACCGGCTTCAATCTCTTCTCTTCGGAACCGAACTCGCCGCCGAGAGAAAAGACTTCTCCTCCGCTCAGATCTGCAGTCTTCGTCCCACAGTCTCACTCGATCTCAGCTCGACCATGCTTTCGTCAGCCTTATTCTCCGTAAAGCCGTCTCCAAGCTCGGTGAGGCTCGTTGTCCGCGCATTTCTGATTCCGATTGGTACGCCTATTTCTCTTCCCCTCTTAGAGCTTCGACTCTCTTCACGGGATTTGAGTGTGGAATTTTGGGGAGCGGATTCAGTTTACGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

102

Amino Acids

11.19

Weight (kDa)

4.96

Isoelectric Point (pI)

40.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FIGL1_N PF24347 2 - 35 3e-12 FIGL1 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 86, 290
AccI GTMKAC 1 cut(s) 9
AccII CGCG 1 cut(s) 198
AciI CCGC 4 cut(s) 60, 84, 196, 290
AcsI RAATTY 1 cut(s) 278
AfaI GTAC 1 cut(s) 220
AgsI TTSAA 1 cut(s) 32
AluBI AGCT 3 cut(s) 129, 177, 247
AluI AGCT 3 cut(s) 129, 177, 247
Alw26I GTCTC 2 cut(s) 118, 174
ApoI RAATTY 1 cut(s) 278
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
AspLEI GCGC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 193
BbsI GAAGAC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 151
BcoDI GTCTC 2 cut(s) 118, 174
BfmI CTRYAG 1 cut(s) 94
BglII AGATCT 1 cut(s) 90
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmiI GGNNCC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 92
BsaXI ACNNNNNCTCC 2 cut(s) 65, 95
Bse118I RCCGGY 1 cut(s) 24
BseMII CTCAG 2 cut(s) 101, 139
BseRI GAGGAG 1 cut(s) 70
Bsh1236I CGCG 1 cut(s) 198
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 1 cut(s) 90
BsmAI GTCTC 2 cut(s) 118, 174
BsmBI CGTCTC 1 cut(s) 174
BsmFI GGGAC 1 cut(s) 90
Bsp143I GATC 2 cut(s) 90, 121
BspACI CCGC 4 cut(s) 60, 84, 196, 290
BspCNI CTCAG 2 cut(s) 100, 138
BspFNI CGCG 1 cut(s) 198
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 98
BsrBI CCGCTC 2 cut(s) 86, 290
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssMI GATC 2 cut(s) 90, 121
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 4 cut(s) 42, 47, 237, 262
BstDEI CTNAG 3 cut(s) 87, 125, 241
BstFNI CGCG 1 cut(s) 198
BstHHI GCGC 1 cut(s) 200
BstKTI GATC 2 cut(s) 93, 124
BstMAI GTCTC 2 cut(s) 118, 174
BstMBI GATC 2 cut(s) 90, 121
BstSFI CTRYAG 1 cut(s) 94
BstUI CGCG 1 cut(s) 198
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
CfoI GCGC 1 cut(s) 200
Cfr10I RCCGGY 1 cut(s) 24
Csp6I GTAC 1 cut(s) 219
CviAII CATG 1 cut(s) 136
CviJI RGCY 7 cut(s) 28, 129, 149, 166, 177, 187, 247
CviKI_1 RGCY 7 cut(s) 28, 129, 149, 166, 177, 187, 247
CviQI GTAC 1 cut(s) 219
DdeI CTNAG 3 cut(s) 87, 125, 241
DpnI GATC 2 cut(s) 92, 123
DpnII GATC 2 cut(s) 90, 121
Eam1104I CTCTTC 4 cut(s) 42, 47, 237, 262
EarI CTCTTC 4 cut(s) 42, 47, 237, 262
Esp3I CGTCTC 1 cut(s) 174
FaeI CATG 1 cut(s) 139
FaiI YATR 1 cut(s) 137
FaqI GGGAC 1 cut(s) 90
FatI CATG 1 cut(s) 135
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
GlaI GCGC 1 cut(s) 199
GluI GCNGC 1 cut(s) 60
HapII CCGG 1 cut(s) 25
HhaI GCGC 1 cut(s) 200
Hin1II CATG 1 cut(s) 139
Hin6I GCGC 1 cut(s) 198
HinP1I GCGC 1 cut(s) 198
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 3 cut(s) 208, 252, 293
HpaII CCGG 1 cut(s) 25
HphI GGTGA 1 cut(s) 193
Hpy166II GTNNAC 2 cut(s) 10, 301
Hpy188I TCNGA 4 cut(s) 47, 90, 207, 213
Hpy8I GTNNAC 2 cut(s) 10, 301
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 2 cut(s) 4, 96
HpyF3I CTNAG 3 cut(s) 87, 125, 241
Hsp92II CATG 1 cut(s) 139
HspAI GCGC 1 cut(s) 198
Kzo9I GATC 2 cut(s) 90, 121
LmnI GCTCC 1 cut(s) 287
LpnPI CCDG 1 cut(s) 38
MalI GATC 2 cut(s) 92, 123
MbiI CCGCTC 2 cut(s) 86, 290
MboI GATC 2 cut(s) 90, 121
MboII GAAGA 5 cut(s) 29, 34, 92, 224, 249
MflI RGATCY 1 cut(s) 90
MluCI AATT 1 cut(s) 278
MlyI GAGTC 1 cut(s) 246
MnlI CCTC 3 cut(s) 91, 177, 248
MspI CCGG 1 cut(s) 25
MvnI CGCG 1 cut(s) 198
NdeII GATC 2 cut(s) 90, 121
NlaIII CATG 1 cut(s) 139
NlaIV GGNNCC 1 cut(s) 49
NmeAIII GCCGAG 1 cut(s) 88
PfeI GAWTC 2 cut(s) 208, 293
PkrI GCNGC 1 cut(s) 61
PleI GAGTC 1 cut(s) 246
PpsI GAGTC 1 cut(s) 246
PspN4I GGNNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 90
RsaI GTAC 1 cut(s) 220
RsaNI GTAC 1 cut(s) 219
SalI GTCGAC 1 cut(s) 8
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 2 cut(s) 90, 121
SchI GAGTC 1 cut(s) 246
SetI ASST 4 cut(s) 21, 131, 179, 249
SfcI CTRYAG 1 cut(s) 94
Sse9I AATT 1 cut(s) 278
SsiI CCGC 4 cut(s) 60, 84, 196, 290
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 4 cut(s) 9, 120, 131, 250
TasI AATT 1 cut(s) 278
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 2 cut(s) 208, 293
TspGWI ACGGA 1 cut(s) 148
XapI RAATTY 1 cut(s) 278
XmiI GTMKAC 1 cut(s) 9
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.