Rh2CG555400

S-adenosyl-l-methionine decarboxylase leader peptide

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0004538
Physical Location & Seq
Forward (+)
73357017 .. 73360671
3655 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG555400.1

Sequence Viewer

Length: 249 bp
ATGTCTTACGAAAATGAAAGGACACTGAAAGGACTAGATTCTCAAATTTGGTCAAATTTTATTCATTTATTGTATAAACTGAATGAGCTAATGGAGTCAAAGGGTGGGAAAAAGAAGTCTAGCAGTAGTAATTCCTCATTATTCTACGAAGCTCCCCTAGGATACAGCATTGAAGACGTCAGACCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCATACTCTAACTGCGTTCGAAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AdoMetDC_leader

Protein Analysis

82

Amino Acids

9.31

Weight (kDa)

9.48

Isoelectric Point (pI)

44.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 31 - 82 6.5e-35 S-adenosyl-l-methionine decarboxylase leader peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 180
AcsI RAATTY 3 cut(s) 45, 55, 203
AcyI GRCGYC 1 cut(s) 177
AfiI CCNNNNNNNGG 1 cut(s) 191
AgsI TTSAA 1 cut(s) 173
AluBI AGCT 3 cut(s) 88, 152, 215
AluI AGCT 3 cut(s) 88, 152, 215
ApeKI GCWGC 1 cut(s) 215
ApoI RAATTY 3 cut(s) 45, 55, 203
AspA2I CCTAGG 1 cut(s) 157
AsuII TTCGAA 1 cut(s) 235
AvrII CCTAGG 1 cut(s) 157
BbsI GAAGAC 1 cut(s) 180
BbvI GCAGC 1 cut(s) 202
BciVI GTATCC 1 cut(s) 155
BfaI CTAG 3 cut(s) 35, 120, 158
BfuI GTATCC 1 cut(s) 155
BisI GCNGC 1 cut(s) 216
BlnI CCTAGG 1 cut(s) 157
BlsI GCNGC 1 cut(s) 217
BpiI GAAGAC 1 cut(s) 180
Bpu14I TTCGAA 1 cut(s) 235
BsaHI GRCGYC 1 cut(s) 177
BsaJI CCNNGG 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 191
BseDI CCNNGG 1 cut(s) 157
BseGI GGATG 1 cut(s) 242
BseLI CCNNNNNNNGG 1 cut(s) 191
BseXI GCAGC 1 cut(s) 202
BslI CCNNNNNNNGG 1 cut(s) 191
Bsp119I TTCGAA 1 cut(s) 235
Bsp143I GATC 1 cut(s) 209
BspT104I TTCGAA 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 157
BssMI GATC 1 cut(s) 209
BssNI GRCGYC 1 cut(s) 177
BssT1I CCWWGG 1 cut(s) 157
Bst4CI ACNGT 1 cut(s) 191
BstACI GRCGYC 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 235
BstF5I GGATG 1 cut(s) 242
BstKTI GATC 1 cut(s) 212
BstMBI GATC 1 cut(s) 209
BstV1I GCAGC 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 180
BsuI GTATCC 1 cut(s) 155
BtsCI GGATG 1 cut(s) 242
BtsIMutI CAGTG 1 cut(s) 23
CviJI RGCY 4 cut(s) 88, 152, 215, 241
CviKI_1 RGCY 4 cut(s) 88, 152, 215, 241
DpnI GATC 1 cut(s) 211
DpnII GATC 1 cut(s) 209
Eco130I CCWWGG 1 cut(s) 157
EcoT14I CCWWGG 1 cut(s) 157
ErhI CCWWGG 1 cut(s) 157
FaiI YATR 2 cut(s) 75, 220
Fnu4HI GCNGC 1 cut(s) 216
FokI GGATG 1 cut(s) 229
Fsp4HI GCNGC 1 cut(s) 216
FspBI CTAG 3 cut(s) 35, 120, 158
GluI GCNGC 1 cut(s) 216
Hin1I GRCGYC 1 cut(s) 177
HinfI GANTC 3 cut(s) 38, 95, 195
Hpy188I TCNGA 2 cut(s) 182, 209
Hpy188III TCNNGA 2 cut(s) 199, 246
HpyCH4III ACNGT 1 cut(s) 191
HpyCH4IV ACGT 1 cut(s) 177
HpyCH4V TGCA 1 cut(s) 218
HpySE526I ACGT 1 cut(s) 177
Hsp92I GRCGYC 1 cut(s) 177
Kzo9I GATC 1 cut(s) 209
LmnI GCTCC 1 cut(s) 157
Lsp1109I GCAGC 1 cut(s) 202
MaeI CTAG 3 cut(s) 35, 120, 158
MaeII ACGT 1 cut(s) 177
MalI GATC 1 cut(s) 211
MboI GATC 1 cut(s) 209
MboII GAAGA 1 cut(s) 185
MluCI AATT 4 cut(s) 45, 55, 130, 203
MlyI GAGTC 1 cut(s) 104
MnlI CCTC 2 cut(s) 145, 195
MspA1I CMGCKG 1 cut(s) 215
NdeII GATC 1 cut(s) 209
NspV TTCGAA 1 cut(s) 235
PfeI GAWTC 2 cut(s) 38, 195
PkrI GCNGC 1 cut(s) 217
PleI GAGTC 1 cut(s) 103
PpsI GAGTC 1 cut(s) 103
PvuII CAGCTG 1 cut(s) 215
SatI GCNGC 1 cut(s) 216
Sau3AI GATC 1 cut(s) 209
SchI GAGTC 1 cut(s) 104
SetI ASST 5 cut(s) 90, 154, 180, 187, 217
SfuI TTCGAA 1 cut(s) 235
SgeI CNNG 5 cut(s) 47, 132, 170, 200, 211
Sse9I AATT 4 cut(s) 45, 55, 130, 203
SspMI CTAG 3 cut(s) 35, 120, 158
StyI CCWWGG 1 cut(s) 157
TaaI ACNGT 1 cut(s) 191
TaiI ACGT 1 cut(s) 180
TaqI TCGA 1 cut(s) 235
TasI AATT 4 cut(s) 45, 55, 130, 203
TfiI GAWTC 2 cut(s) 38, 195
TscAI CASTG 1 cut(s) 30
TseI GCWGC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 30, 53
TspRI CASTG 1 cut(s) 30
XapI RAATTY 3 cut(s) 45, 55, 203
XmaJI CCTAGG 1 cut(s) 157
XspI CTAG 3 cut(s) 35, 120, 158
ZraI GACGTC 1 cut(s) 178
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.