MD17G1070400.v1.1

S-adenosylmethionine decarboxylase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
OG0004538
Physical Location & Seq
Reverse (-)
5684612 .. 5686008
1397 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1070400.v1.1.491

Sequence Viewer

Length: 156 bp
ATGGAGTCAAAAGGTGGCAAAAAGGATTCTAGTAGTAGTAAATCATCATTCTACGAAGCTCCCCTCGGTTACAGCATTGAAGACGTCAGGCCTCACGGTGGAATCAAGAAATTCAGATCAGCTGCTTACTCTAACTGCGTTCGAAAGCCATCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00270 ko00330 ko01100 map00270 map00330 map01100
Pfam Domains
Protein Families
AdoMetDC_leader SAM_decarbox

Protein Analysis

52

Amino Acids

5.56

Weight (kDa)

9.67

Isoelectric Point (pI)

60.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AdoMetDC_leader PF08132 1 - 51 1e-34 S-adenosyl-l-methionine decarboxylase leader peptide
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 87
AcsI RAATTY 1 cut(s) 110
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 98
AgsI TTSAA 1 cut(s) 80
AluBI AGCT 2 cut(s) 59, 122
AluI AGCT 2 cut(s) 59, 122
AoxI GGCC 1 cut(s) 89
ApeKI GCWGC 1 cut(s) 122
ApoI RAATTY 1 cut(s) 110
AsuII TTCGAA 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 87
BbvI GCAGC 1 cut(s) 109
BfaI CTAG 1 cut(s) 30
BisI GCNGC 1 cut(s) 123
BlsI GCNGC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 87
Bpu14I TTCGAA 1 cut(s) 142
BsaHI GRCGYC 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 64
Bsc4I CCNNNNNNNGG 1 cut(s) 98
BseDI CCNNGG 1 cut(s) 64
BseGI GGATG 1 cut(s) 149
BseLI CCNNNNNNNGG 1 cut(s) 98
BseXI GCAGC 1 cut(s) 109
BshFI GGCC 1 cut(s) 91
BslI CCNNNNNNNGG 1 cut(s) 98
BsnI GGCC 1 cut(s) 91
Bsp119I TTCGAA 1 cut(s) 142
Bsp143I GATC 1 cut(s) 116
BspANI GGCC 1 cut(s) 91
BspT104I TTCGAA 1 cut(s) 142
BssECI CCNNGG 1 cut(s) 64
BssMI GATC 1 cut(s) 116
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 142
BstF5I GGATG 1 cut(s) 149
BstKTI GATC 1 cut(s) 119
BstMBI GATC 1 cut(s) 116
BstV1I GCAGC 1 cut(s) 109
BstV2I GAAGAC 1 cut(s) 87
BsuRI GGCC 1 cut(s) 91
BtsCI GGATG 1 cut(s) 149
CviJI RGCY 4 cut(s) 59, 91, 122, 148
CviKI_1 RGCY 4 cut(s) 59, 91, 122, 148
DpnI GATC 1 cut(s) 118
DpnII GATC 1 cut(s) 116
Eco147I AGGCCT 1 cut(s) 91
Fnu4HI GCNGC 1 cut(s) 123
FokI GGATG 1 cut(s) 136
Fsp4HI GCNGC 1 cut(s) 123
FspBI CTAG 1 cut(s) 30
FspEI CC 9 cut(s) 8, 51, 73, 75, 76, 77, 81, 84, 105
GluI GCNGC 1 cut(s) 123
HaeIII GGCC 1 cut(s) 91
Hin1I GRCGYC 1 cut(s) 84
HinfI GANTC 3 cut(s) 5, 26, 102
Hpy188I TCNGA 1 cut(s) 116
Hpy188III TCNNGA 2 cut(s) 106, 153
HpyCH4III ACNGT 1 cut(s) 98
HpyCH4IV ACGT 1 cut(s) 84
HpySE526I ACGT 1 cut(s) 84
Hsp92I GRCGYC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 116
LmnI GCTCC 1 cut(s) 64
LpnPI CCDG 1 cut(s) 73
Lsp1109I GCAGC 1 cut(s) 109
MaeI CTAG 1 cut(s) 30
MaeII ACGT 1 cut(s) 84
MaeIII GTNAC 1 cut(s) 68
MalI GATC 1 cut(s) 118
MboI GATC 1 cut(s) 116
MboII GAAGA 1 cut(s) 92
MluCI AATT 1 cut(s) 110
MlyI GAGTC 1 cut(s) 14
MnlI CCTC 2 cut(s) 74, 102
MspA1I CMGCKG 1 cut(s) 122
NdeII GATC 1 cut(s) 116
NspV TTCGAA 1 cut(s) 142
PceI AGGCCT 1 cut(s) 91
PfeI GAWTC 2 cut(s) 26, 102
PkrI GCNGC 1 cut(s) 124
PleI GAGTC 1 cut(s) 13
PpsI GAGTC 1 cut(s) 13
PvuII CAGCTG 1 cut(s) 122
SatI GCNGC 1 cut(s) 123
Sau3AI GATC 1 cut(s) 116
SchI GAGTC 1 cut(s) 14
SetI ASST 4 cut(s) 16, 61, 87, 124
SfuI TTCGAA 1 cut(s) 142
SgeI CNNG 5 cut(s) 42, 77, 100, 107, 118
Sse9I AATT 1 cut(s) 110
SseBI AGGCCT 1 cut(s) 91
SspMI CTAG 1 cut(s) 30
StuI AGGCCT 1 cut(s) 91
TaaI ACNGT 1 cut(s) 98
TaiI ACGT 1 cut(s) 87
TaqI TCGA 1 cut(s) 142
TasI AATT 1 cut(s) 110
TfiI GAWTC 2 cut(s) 26, 102
TseI GCWGC 1 cut(s) 122
XapI RAATTY 1 cut(s) 110
XspI CTAG 1 cut(s) 30
ZraI GACGTC 1 cut(s) 85
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.