Rh5AG084500

Belongs to the AAA ATPase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0004538
Physical Location & Seq
Forward (+)
7261385 .. 7263682
2298 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG084500.1

Sequence Viewer

Length: 249 bp
ATGCAAGTCGACGATAACCTAAACCGGCTTCAATCTCTTCTCTTCGGAACCAAACTCGCCGCCAAGAGAAACGACTTCTCCTCCGCTCAGATCTGCAGTCTTCGTCCCACAGTCCCACTCTCAGCTCGACCATGCTTTCGTCAGCCTTATTTTCTACAAAGCCGTCTCCAAGCTCGGGGCTTCTTCCATGGATACTCAGTTCTCATGATTCTCAACCATGCATTCAGTGGCATTTCTGTGTCTATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000228 GO:0000280 GO:0000287 GO:0001503 GO:0001649 GO:0003674 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005737 GO:0006139 GO:0006163 GO:0006282 GO:0006725 GO:0006753 GO:0006793 GO:0006796 GO:0006807 GO:0006996 GO:0007049 GO:0007140 GO:0007276 GO:0008150 GO:0008152 GO:0008283 GO:0009117 GO:0009123 GO:0009126 GO:0009141 GO:0009144 GO:0009150 GO:0009161 GO:0009167 GO:0009199 GO:0009205 GO:0009259 GO:0009314 GO:0009628 GO:0009892 GO:0009987 GO:0010212 GO:0010520 GO:0010564 GO:0010569 GO:0010605 GO:0010639 GO:0010941 GO:0010948 GO:0016043 GO:0016787 GO:0017144 GO:0019219 GO:0019222 GO:0019637 GO:0019693 GO:0019953 GO:0022402 GO:0022412 GO:0022414 GO:0030154 GO:0031323 GO:0031324 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032504 GO:0033043 GO:0033687 GO:0034641 GO:0040020 GO:0042981 GO:0043066 GO:0043067 GO:0043069 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0044703 GO:0045128 GO:0045786 GO:0045835 GO:0045910 GO:0045934 GO:0046034 GO:0046483 GO:0046872 GO:0048232 GO:0048285 GO:0048471 GO:0048519 GO:0048523 GO:0048583 GO:0048609 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051053 GO:0051128 GO:0051129 GO:0051171 GO:0051172 GO:0051321 GO:0051445 GO:0051447 GO:0051704 GO:0051716 GO:0051726 GO:0051783 GO:0051784 GO:0055086 GO:0060255 GO:0060548 GO:0060631 GO:0065007 GO:0070013 GO:0071214 GO:0071478 GO:0071479 GO:0071704 GO:0071840 GO:0072521 GO:0080090 GO:0080134 GO:0080135 GO:0104004 GO:0110029 GO:0140013 GO:1901135 GO:1901360 GO:1901564 GO:1903046 GO:2000241 GO:2000242 GO:2000779 GO:2001020
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
AAA Vps4_C

Protein Analysis

82

Amino Acids

9.27

Weight (kDa)

10.42

Isoelectric Point (pI)

47.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FIGL1_N PF24347 2 - 35 5.8e-11 FIGL1 N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 86
AccI GTMKAC 1 cut(s) 9
AciI CCGC 2 cut(s) 60, 84
AfiI CCNNNNNNNGG 1 cut(s) 175
AgsI TTSAA 1 cut(s) 32
AloI GAACNNNNNNTCC 2 cut(s) 183, 215
AluBI AGCT 2 cut(s) 125, 173
AluI AGCT 2 cut(s) 125, 173
Alw26I GTCTC 1 cut(s) 170
Ama87I CYCGRG 1 cut(s) 174
ArsI GACNNNNNNTTYG 2 cut(s) 120, 152
AvaI CYCGRG 1 cut(s) 174
BbsI GAAGAC 1 cut(s) 92
BceAI ACGGC 1 cut(s) 147
BciVI GTATCC 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 170
BfmI CTRYAG 1 cut(s) 94
BfuI GTATCC 1 cut(s) 185
BglII AGATCT 1 cut(s) 90
BisI GCNGC 1 cut(s) 60
BlsI GCNGC 1 cut(s) 61
BmeT110I CYCGRG 1 cut(s) 174
BmiI GGNNCC 1 cut(s) 49
BpiI GAAGAC 1 cut(s) 92
BsaJI CCNNGG 1 cut(s) 187
BsaXI ACNNNNNCTCC 4 cut(s) 62, 65, 92, 95
Bsc4I CCNNNNNNNGG 1 cut(s) 175
Bse118I RCCGGY 1 cut(s) 24
BseDI CCNNGG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 175
BseMII CTCAG 3 cut(s) 101, 135, 210
BseRI GAGGAG 1 cut(s) 70
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 1 cut(s) 25
BslFI GGGAC 2 cut(s) 90, 98
BslI CCNNNNNNNGG 1 cut(s) 175
BsmAI GTCTC 1 cut(s) 170
BsmBI CGTCTC 1 cut(s) 170
BsmFI GGGAC 2 cut(s) 90, 98
BsmI GAATGC 1 cut(s) 221
BsoBI CYCGRG 1 cut(s) 174
Bsp143I GATC 1 cut(s) 90
Bsp19I CCATGG 1 cut(s) 187
BspACI CCGC 2 cut(s) 60, 84
BspCNI CTCAG 3 cut(s) 100, 134, 209
BspHI TCATGA 1 cut(s) 204
BspLI GGNNCC 1 cut(s) 49
BspMAI CTGCAG 1 cut(s) 98
BsrBI CCGCTC 1 cut(s) 86
BsrFI RCCGGY 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 24
BssECI CCNNGG 1 cut(s) 187
BssMI GATC 1 cut(s) 90
BssT1I CCWWGG 1 cut(s) 187
Bst4CI ACNGT 1 cut(s) 112
Bst6I CTCTTC 2 cut(s) 42, 47
BstDEI CTNAG 3 cut(s) 87, 121, 196
BstDSI CCRYGG 1 cut(s) 187
BstKTI GATC 1 cut(s) 93
BstMAI GTCTC 1 cut(s) 170
BstMBI GATC 1 cut(s) 90
BstSFI CTRYAG 1 cut(s) 94
BstV2I GAAGAC 1 cut(s) 92
BstX2I RGATCY 1 cut(s) 90
BstYI RGATCY 1 cut(s) 90
BsuI GTATCC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 232
CciI TCATGA 1 cut(s) 204
Cfr10I RCCGGY 1 cut(s) 24
CviAII CATG 4 cut(s) 132, 188, 205, 218
CviJI RGCY 6 cut(s) 28, 125, 145, 162, 173, 180
CviKI_1 RGCY 6 cut(s) 28, 125, 145, 162, 173, 180
DdeI CTNAG 3 cut(s) 87, 121, 196
DpnI GATC 1 cut(s) 92
DpnII GATC 1 cut(s) 90
Eam1104I CTCTTC 2 cut(s) 42, 47
EarI CTCTTC 2 cut(s) 42, 47
Eco130I CCWWGG 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 174
EcoT14I CCWWGG 1 cut(s) 187
EcoT22I ATGCAT 1 cut(s) 223
ErhI CCWWGG 1 cut(s) 187
Esp3I CGTCTC 1 cut(s) 170
FaeI CATG 4 cut(s) 135, 191, 208, 221
FaiI YATR 5 cut(s) 133, 189, 206, 219, 245
FaqI GGGAC 2 cut(s) 90, 98
FatI CATG 4 cut(s) 131, 187, 204, 217
FblI GTMKAC 1 cut(s) 9
Fnu4HI GCNGC 1 cut(s) 60
Fsp4HI GCNGC 1 cut(s) 60
GluI GCNGC 1 cut(s) 60
HapII CCGG 1 cut(s) 25
Hin1II CATG 4 cut(s) 135, 191, 208, 221
HincII GTYRAC 1 cut(s) 10
HindII GTYRAC 1 cut(s) 10
HinfI GANTC 1 cut(s) 208
HpaII CCGG 1 cut(s) 25
Hpy166II GTNNAC 1 cut(s) 10
Hpy188I TCNGA 2 cut(s) 47, 90
Hpy188III TCNNGA 1 cut(s) 205
Hpy8I GTNNAC 1 cut(s) 10
Hpy99I CGWCG 1 cut(s) 14
HpyCH4III ACNGT 1 cut(s) 112
HpyCH4V TGCA 3 cut(s) 4, 96, 221
HpyF3I CTNAG 3 cut(s) 87, 121, 196
Hsp92II CATG 4 cut(s) 135, 191, 208, 221
Kzo9I GATC 1 cut(s) 90
LpnPI CCDG 1 cut(s) 38
MalI GATC 1 cut(s) 92
MbiI CCGCTC 1 cut(s) 86
MboI GATC 1 cut(s) 90
MboII GAAGA 4 cut(s) 29, 34, 92, 175
MflI RGATCY 1 cut(s) 90
MnlI CCTC 1 cut(s) 91
Mph1103I ATGCAT 1 cut(s) 223
MslI CAYNNNNRTG 1 cut(s) 236
MspI CCGG 1 cut(s) 25
Mva1269I GAATGC 1 cut(s) 221
NcoI CCATGG 1 cut(s) 187
NdeII GATC 1 cut(s) 90
NlaIII CATG 4 cut(s) 135, 191, 208, 221
NlaIV GGNNCC 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 223
PagI TCATGA 1 cut(s) 204
PctI GAATGC 1 cut(s) 221
PfeI GAWTC 1 cut(s) 208
PkrI GCNGC 1 cut(s) 61
PspN4I GGNNCC 1 cut(s) 49
PstI CTGCAG 1 cut(s) 98
PsuI RGATCY 1 cut(s) 90
RseI CAYNNNNRTG 1 cut(s) 236
SalI GTCGAC 1 cut(s) 8
SatI GCNGC 1 cut(s) 60
Sau3AI GATC 1 cut(s) 90
SetI ASST 3 cut(s) 21, 127, 175
SfcI CTRYAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 236
SsiI CCGC 2 cut(s) 60, 84
StyI CCWWGG 1 cut(s) 187
TaaI ACNGT 1 cut(s) 112
TaqI TCGA 2 cut(s) 9, 127
TauI GCSGC 1 cut(s) 62
TfiI GAWTC 1 cut(s) 208
TscAI CASTG 1 cut(s) 232
TspRI CASTG 1 cut(s) 232
XcmI CCANNNNNNNNNTGG 1 cut(s) 224
XmiI GTMKAC 1 cut(s) 9
Zsp2I ATGCAT 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.